FvH4_4g05960

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
5367129 .. 5372380
5252 bp
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UTR
Exon/CDS
Intron
FvH4_4g05960.t2

Sequence Viewer

Length: 1311 bp
ATGTTTGTTAGATTCATGGGGATTTGTTTCAGTGACCACAAGAAGGAATCCAAGTTTATTCAGAAAACCCAACAAGTAGGATATGACTCTTCGGTATCTCAACCTAACCCGGATAGAACACCACGCGATACTCCTTTGGTTACAAAGAACATCAAAGACCTCCGCCAGAATCCCGGATATGTCAATGTCCACATCTTTACTCACGATGAGATGAGGTTGGCCACAAAAAATTTCAGACCAGATCTCATTCTTGGAGAAGGTGGATTTGGAATTGTATACAAAGGAGTCATTGATGACACTGTGAGGCCAGGTTACACGGCCACACAAGTTGCCATTAAGGAGCTTAACCCAGAAGGGTACCAAGGTGATAGGGAATGGCTGGCTGAAGTTAACTACTTGGGACAGTTCAGTCATCCTAATCTTGTGAGGCTCATAGGGTACTGTTGTGAGGATGAACACCGCCAGTTGGTCTATGAATATATGGCAAGTGGCAGCTTGGAAAAACATCTTTTCCGCAGAGTGGGTTGTACGCTTACATGGACAAGAAGAATGAAGATCGCCTTAGATGCTGCAAAAGGACTTGCTTTTCTTCATGGCGCTGAAAGACCAATCATTTACCGTGACTTCAAGACATCAAACATATTGTTGGATGCGAATTTTAATGCGAAGCTTTCAGACTTTGGACTTGCAAAGGAAGGACCGATGGGAGACCAAACCCATGTTTCAACAAGAGTGATGGGGACATACGGATATGCCGCTCCTGAGTATGTAATGACTGGGCATCTAACAGCTCGAAGCGATGTTTATGGATTTGGAGTAGTGCTGCTTGAGATGCTCATTGGAAGGAGAGCAATGGATAAGAGCAGGCCCAGCCGAGAACATAATCTGGTTGAATGGGCTCGGCCACTCTTGAATCATAATAAGAAACTTTTGAGGATTGTAGACCCTCGACTGGAAGGCCAGTACTCACTTAAAACTGCATTGAAGGTGGCCCATCTAGCATACCAATGCCTTAGCCAGAACCCAAAAGGGAGACCCCTTATGAGCCAGGTTGTCGAAATCCTGGAGAGTCTTCAAACACCAGAACACCATGACCCTTTGCTTCAAAGCGGAGATCGAGCTGTAACTCTTTATGAGGCTCCCAAGGGAACCTCTGGAACTCATGCTAAGAGAGATGTAAATGGAAAAGATGGTGAAGGGGGAGGAGAGGTTAGGAGAAGGAGCAACCGGGGAAATGAAAGGGGCCACAGTGAGCCTATGAGTGATCATGATCCTCATAGCTCGTCTCCAAGTTTTTTGTCGGCAAAGTAA

Protein Analysis

437

Amino Acids

49.09

Weight (kDa)

8.97

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 82 - 352 2.4e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 83 - 354 4.2e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012008)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 408
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AccBSI CCGCTC 1 cut(s) 758
AccI GTMKAC 2 cut(s) 276, 942
AccII CGCG 1 cut(s) 126
AciI CCGC 5 cut(s) 163, 460, 514, 756, 1110
AclWI GGATC 1 cut(s) 1265
AcoI YGGCCR 3 cut(s) 219, 318, 902
AcsI RAATTY 2 cut(s) 229, 655
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 4 cut(s) 359, 440, 529, 965
AfiI CCNNNNNNNGG 4 cut(s) 43, 466, 520, 952
AgsI TTSAA 7 cut(s) 628, 726, 893, 913, 985, 1076, 1106
AjnI CCWGG 3 cut(s) 307, 1047, 1062
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 6 cut(s) 343, 495, 670, 791, 1121, 1281
AluI AGCT 6 cut(s) 343, 495, 670, 791, 1121, 1281
Alw26I GTCTC 3 cut(s) 702, 1027, 1290
AlwI GGATC 1 cut(s) 1265
AoxI GGCC 8 cut(s) 219, 305, 318, 866, 902, 958, 990, 1243
ApeKI GCWGC 3 cut(s) 492, 569, 823
ApoI RAATTY 2 cut(s) 229, 655
Asp718I GGTACC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 4 cut(s) 698, 867, 991, 1243
AsuC2I CCSGG 3 cut(s) 110, 174, 1229
AsuHPI GGTGA 2 cut(s) 377, 1205
AvaII GGWCC 1 cut(s) 698
BaeI ACNNNNGTAYC 4 cut(s) 349, 382, 430, 463
BalI TGGCCA 1 cut(s) 221
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 1 cut(s) 901
BbsI GAAGAC 1 cut(s) 1064
BbvI GCAGC 3 cut(s) 504, 556, 810
BccI CCATC 4 cut(s) 697, 730, 1002, 1184
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 3 cut(s) 309, 1049, 1064
BclI TGATCA 1 cut(s) 1264
BcnI CCSGG 3 cut(s) 110, 174, 1229
BcoDI GTCTC 3 cut(s) 702, 1027, 1290
BfaI CTAG 1 cut(s) 998
BfoI RGCGCY 1 cut(s) 600
BglII AGATCT 1 cut(s) 241
BisI GCNGC 4 cut(s) 493, 570, 756, 824
BlsI GCNGC 4 cut(s) 494, 571, 757, 825
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 6 cut(s) 110, 174, 309, 1049, 1064, 1229
Bme18I GGWCC 1 cut(s) 698
BmgT120I GGNCC 4 cut(s) 698, 867, 991, 1243
BmiI GGNNCC 4 cut(s) 359, 1140, 1150, 1244
BmrFI CCNGG 6 cut(s) 110, 174, 309, 1049, 1064, 1229
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 4 cut(s) 556, 640, 790, 822
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 1064
BpmI CTGGAG 1 cut(s) 1085
Bpu10I CCTNAGC 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 848
BpuMI CCSGG 3 cut(s) 110, 174, 1229
BsaBI GATNNNNATC 1 cut(s) 1269
BsaI GGTCTC 2 cut(s) 702, 1027
BsaJI CCNNGG 3 cut(s) 361, 1143, 1228
BsaXI ACNNNNNCTCC 2 cut(s) 1194, 1224
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 466, 520, 952
Bse1I ACTGG 4 cut(s) 463, 781, 957, 961
Bse3DI GCAATG 1 cut(s) 858
Bse8I GATNNNNATC 1 cut(s) 1269
BseBI CCWGG 3 cut(s) 309, 1049, 1064
BseDI CCNNGG 3 cut(s) 361, 1143, 1228
BseGI GGATG 3 cut(s) 412, 457, 655
BseJI GATNNNNATC 1 cut(s) 1269
BseLI CCNNNNNNNGG 4 cut(s) 43, 466, 520, 952
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 4 cut(s) 463, 781, 957, 961
BseRI GAGGAG 1 cut(s) 1218
BseXI GCAGC 3 cut(s) 504, 556, 810
BseYI CCCAGC 1 cut(s) 869
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 8 cut(s) 221, 307, 320, 868, 904, 960, 992, 1245
BshNI GGYRCC 1 cut(s) 357
BsiSI CCGG 3 cut(s) 110, 174, 1228
BslFI GGGAC 2 cut(s) 414, 754
BslI CCNNNNNNNGG 4 cut(s) 43, 466, 520, 952
BsmAI GTCTC 3 cut(s) 702, 1027, 1290
BsmBI CGTCTC 1 cut(s) 1290
BsmFI GGGAC 2 cut(s) 414, 754
BsnI GGCC 8 cut(s) 221, 307, 320, 868, 904, 960, 992, 1245
Bso31I GGTCTC 2 cut(s) 702, 1027
Bsp1286I GDGCHC 1 cut(s) 901
Bsp143I GATC 5 cut(s) 241, 555, 1114, 1264, 1270
BspACI CCGC 5 cut(s) 163, 460, 514, 756, 1110
BspANI GGCC 8 cut(s) 221, 307, 320, 868, 904, 960, 992, 1245
BspCNI CTCAG 1 cut(s) 754
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 4 cut(s) 359, 1140, 1150, 1244
BspPI GGATC 1 cut(s) 1265
BspT107I GGYRCC 1 cut(s) 357
BspTNI GGTCTC 2 cut(s) 702, 1027
BsrBI CCGCTC 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 858
BsrI ACTGG 4 cut(s) 463, 781, 957, 961
BssECI CCNNGG 3 cut(s) 361, 1143, 1228
BssMI GATC 5 cut(s) 241, 555, 1114, 1264, 1270
BssNAI GTATAC 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 361, 1143
Bst1107I GTATAC 1 cut(s) 277
Bst2UI CCWGG 3 cut(s) 309, 1049, 1064
Bst4CI ACNGT 5 cut(s) 301, 405, 443, 620, 1250
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 381, 866
BstDEI CTNAG 4 cut(s) 562, 762, 1013, 1167
BstF5I GGATG 3 cut(s) 412, 457, 655
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 5 cut(s) 244, 558, 1117, 1267, 1273
BstMAI GTCTC 3 cut(s) 702, 1027, 1290
BstMBI GATC 5 cut(s) 241, 555, 1114, 1264, 1270
BstMWI GCNNNNNNNGC 4 cut(s) 566, 832, 870, 998
BstNI CCWGG 3 cut(s) 309, 1049, 1064
BstSCI CCNGG 6 cut(s) 108, 172, 307, 1047, 1062, 1227
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 504, 556, 810
BstV2I GAAGAC 1 cut(s) 1064
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 277
BsuRI GGCC 8 cut(s) 221, 307, 320, 868, 904, 960, 992, 1245
BtgZI GCGATG 1 cut(s) 813
BtsCI GGATG 3 cut(s) 412, 457, 655
BtsIMutI CAGTG 3 cut(s) 37, 297, 1255
Cac8I GCNNGC 2 cut(s) 381, 866
CciI TCATGA 1 cut(s) 1267
CfoI GCGC 1 cut(s) 599
Cfr13I GGNCC 4 cut(s) 698, 867, 991, 1243
Csp6I GTAC 4 cut(s) 358, 439, 528, 964
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 7 cut(s) 16, 537, 593, 719, 1091, 1163, 1268
CviQI GTAC 4 cut(s) 358, 439, 528, 964
DdeI CTNAG 4 cut(s) 562, 762, 1013, 1167
DpnI GATC 5 cut(s) 243, 557, 1116, 1266, 1272
DpnII GATC 5 cut(s) 241, 555, 1114, 1264, 1270
DrdI GACNNNNNNGTC 1 cut(s) 408
DseDI GACNNNNNNGTC 1 cut(s) 408
EaeI YGGCCR 3 cut(s) 219, 318, 902
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 361, 1143
Eco24I GRGCYC 1 cut(s) 901
Eco31I GGTCTC 2 cut(s) 702, 1027
Eco47I GGWCC 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 405
EcoRII CCWGG 3 cut(s) 307, 1047, 1062
EcoT14I CCWWGG 2 cut(s) 361, 1143
EcoT38I GRGCYC 1 cut(s) 901
ErhI CCWWGG 2 cut(s) 361, 1143
Esp3I CGTCTC 1 cut(s) 1290
FaeI CATG 7 cut(s) 19, 540, 596, 722, 1094, 1166, 1271
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 2 cut(s) 414, 754
FatI CATG 7 cut(s) 15, 536, 592, 718, 1090, 1162, 1267
FbaI TGATCA 1 cut(s) 1264
FblI GTMKAC 2 cut(s) 276, 942
Fnu4HI GCNGC 4 cut(s) 493, 570, 756, 824
FokI GGATG 3 cut(s) 399, 464, 662
FriOI GRGCYC 1 cut(s) 901
Fsp4HI GCNGC 4 cut(s) 493, 570, 756, 824
FspBI CTAG 1 cut(s) 998
GlaI GCGC 1 cut(s) 598
GluI GCNGC 4 cut(s) 493, 570, 756, 824
GsaI CCCAGC 1 cut(s) 873
GsuI CTGGAG 1 cut(s) 1085
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 8 cut(s) 221, 307, 320, 868, 904, 960, 992, 1245
HapII CCGG 3 cut(s) 110, 174, 1228
HhaI GCGC 1 cut(s) 599
Hin1II CATG 7 cut(s) 19, 540, 596, 722, 1094, 1166, 1271
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 7 cut(s) 12, 47, 86, 169, 285, 913, 1069
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 3 cut(s) 110, 174, 1228
HphI GGTGA 2 cut(s) 377, 1205
Hpy166II GTNNAC 4 cut(s) 190, 277, 391, 943
Hpy188I TCNGA 3 cut(s) 63, 236, 676
Hpy188III TCNNGA 6 cut(s) 203, 628, 761, 910, 1155, 1268
Hpy8I GTNNAC 4 cut(s) 190, 277, 391, 943
HpyAV CCTTC 9 cut(s) 37, 251, 347, 689, 837, 950, 979, 1190, 1212
HpyCH4III ACNGT 5 cut(s) 301, 405, 443, 620, 1250
HpyCH4V TGCA 3 cut(s) 572, 689, 980
HpyF10VI GCNNNNNNNGC 4 cut(s) 566, 832, 870, 998
HpyF3I CTNAG 4 cut(s) 562, 762, 1013, 1167
Hsp92II CATG 7 cut(s) 19, 540, 596, 722, 1094, 1166, 1271
HspAI GCGC 1 cut(s) 597
KpnI GGTACC 1 cut(s) 361
Ksp22I TGATCA 1 cut(s) 1264
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 241, 555, 1114, 1264, 1270
LmnI GCTCC 4 cut(s) 340, 763, 1144, 1221
Lsp1109I GCAGC 3 cut(s) 504, 556, 810
LweI GCATC 4 cut(s) 556, 640, 790, 822
MaeI CTAG 1 cut(s) 998
MaeIII GTNAC 5 cut(s) 32, 139, 311, 620, 1123
MalI GATC 5 cut(s) 243, 557, 1116, 1266, 1272
MbiI CCGCTC 1 cut(s) 758
MboI GATC 5 cut(s) 241, 555, 1114, 1264, 1270
MboII GAAGA 5 cut(s) 81, 558, 565, 581, 1064
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 901
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 3 cut(s) 229, 270, 655
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 3 cut(s) 80, 294, 1078
MmeI TCCRAC 1 cut(s) 627
Mox20I TGGCCA 1 cut(s) 221
MscI TGGCCA 1 cut(s) 221
MseI TTAA 5 cut(s) 336, 345, 390, 660, 972
MslI CAYNNNNRTG 1 cut(s) 1006
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 3 cut(s) 110, 174, 1228
MspR9I CCNGG 6 cut(s) 110, 174, 309, 1049, 1064, 1229
MvaI CCWGG 3 cut(s) 309, 1049, 1064
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 4 cut(s) 566, 832, 870, 998
NciI CCSGG 3 cut(s) 110, 174, 1229
NdeII GATC 5 cut(s) 241, 555, 1114, 1264, 1270
NlaIII CATG 7 cut(s) 19, 540, 596, 722, 1094, 1166, 1271
NlaIV GGNNCC 4 cut(s) 359, 1140, 1150, 1244
NmeAIII GCCGAG 2 cut(s) 880, 899
NmuCI GTSAC 2 cut(s) 32, 620
PagI TCATGA 1 cut(s) 1267
PfeI GAWTC 4 cut(s) 12, 47, 169, 913
PfoI TCCNGGA 2 cut(s) 172, 1062
PkrI GCNGC 4 cut(s) 494, 571, 757, 825
PleI GAGTC 3 cut(s) 80, 293, 1077
PpsI GAGTC 3 cut(s) 80, 293, 1077
Psp6I CCWGG 3 cut(s) 307, 1047, 1062
PspFI CCCAGC 1 cut(s) 869
PspGI CCWGG 3 cut(s) 307, 1047, 1062
PspN4I GGNNCC 4 cut(s) 359, 1140, 1150, 1244
PspPI GGNCC 4 cut(s) 698, 867, 991, 1243
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 4 cut(s) 359, 440, 529, 965
RsaNI GTAC 4 cut(s) 358, 439, 528, 964
RseI CAYNNNNRTG 1 cut(s) 1006
SaqAI TTAA 5 cut(s) 336, 345, 390, 660, 972
SatI GCNGC 4 cut(s) 493, 570, 756, 824
Sau3AI GATC 5 cut(s) 241, 555, 1114, 1264, 1270
Sau96I GGNCC 4 cut(s) 698, 867, 991, 1243
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 3 cut(s) 80, 294, 1078
ScrFI CCNGG 6 cut(s) 110, 174, 309, 1049, 1064, 1229
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 4 cut(s) 556, 640, 790, 822
SinI GGWCC 1 cut(s) 698
SmiMI CAYNNNNRTG 1 cut(s) 1006
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 3 cut(s) 229, 270, 655
SsiI CCGC 5 cut(s) 163, 460, 514, 756, 1110
SspMI CTAG 1 cut(s) 998
StyD4I CCNGG 6 cut(s) 108, 172, 307, 1047, 1062, 1227
StyI CCWWGG 2 cut(s) 361, 1143
TaaI ACNGT 5 cut(s) 301, 405, 443, 620, 1250
TaqI TCGA 4 cut(s) 793, 949, 1056, 1117
TaqII GACCGA 1 cut(s) 715
TasI AATT 3 cut(s) 229, 270, 655
TatI WGTACW 1 cut(s) 963
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 4 cut(s) 12, 47, 169, 913
Tru1I TTAA 5 cut(s) 336, 345, 390, 660, 972
Tru9I TTAA 5 cut(s) 336, 345, 390, 660, 972
TscAI CASTG 3 cut(s) 37, 304, 1255
TseFI GTSAC 2 cut(s) 32, 620
TseI GCWGC 3 cut(s) 492, 569, 823
Tsp45I GTSAC 2 cut(s) 32, 620
TspDTI ATGAA 6 cut(s) 4, 468, 489, 566, 581, 1251
TspGWI ACGGA 1 cut(s) 762
TspRI CASTG 3 cut(s) 37, 304, 1255
VpaK11BI GGWCC 1 cut(s) 698
XapI RAATTY 2 cut(s) 229, 655
XmiI GTMKAC 2 cut(s) 276, 942
XspI CTAG 1 cut(s) 998
ZrmI AGTACT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.