Rorug03G0344400

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
41558737 .. 41559301
565 bp
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UTR
Exon/CDS
Intron
Rorug03G0344400.1

Sequence Viewer

Length: 351 bp
ATGTTTAAAGCTCTATTTCGGAATGCTAGAGGTGCTGGAAGTAAGAACTTCAAGTCTGCAATTACAGATTTAGCTAAGTTACATTCTGTTGATATGTTGGCTATCTGTGAGCCACGAGTTCAATTTATAAGAGTTAGTAATTCTTTAAGGCATATTGGTTTTCCTAATTCTAGAATTGTTGAAGCTGCGGGTTTCTCTAGAGGTGATTTCAATGAACTTGTCTCTAGTGTTGATAAAAGTTGTGGCACTTTATCTGGTAGATTTGGTGGTCTTAGAGATTGGATAAATAGGAATGGAATGATTGATATGGGTTTCATGGTTCTTGCTATACTTGGAGCAATAATAGAGTGA

Protein Analysis

116

Amino Acids

12.71

Weight (kDa)

9.88

Isoelectric Point (pI)

22.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012008)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AciI CCGC 1 cut(s) 188
AgsI TTSAA 4 cut(s) 52, 122, 182, 211
AluBI AGCT 3 cut(s) 11, 74, 185
AluI AGCT 3 cut(s) 11, 74, 185
Alw26I GTCTC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 215
BauI CACGAG 1 cut(s) 114
BbvI GCAGC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 4 cut(s) 27, 171, 198, 225
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 28
BspACI CCGC 1 cut(s) 188
BssSI CACGAG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 75, 272
BstMAI GTCTC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 172
CviAII CATG 1 cut(s) 316
CviJI RGCY 5 cut(s) 11, 74, 101, 112, 185
CviKI_1 RGCY 5 cut(s) 11, 74, 101, 112, 185
DdeI CTNAG 2 cut(s) 75, 272
DraI TTTAAA 1 cut(s) 7
FaeI CATG 1 cut(s) 319
FaiI YATR 6 cut(s) 95, 128, 153, 308, 317, 329
FatI CATG 1 cut(s) 315
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 4 cut(s) 27, 171, 198, 225
GluI GCNGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 319
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 171, 198
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 75, 272
Hsp92II CATG 1 cut(s) 319
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 2 cut(s) 21, 240
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 4 cut(s) 27, 171, 198, 225
MaeIII GTNAC 1 cut(s) 78
MluCI AATT 5 cut(s) 60, 122, 139, 166, 174
MnlI CCTC 2 cut(s) 23, 194
MseI TTAA 2 cut(s) 6, 146
Mva1269I GAATGC 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 319
PctI GAATGC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 187
PsiI TTATAA 1 cut(s) 128
SaqAI TTAA 2 cut(s) 6, 146
SatI GCNGC 1 cut(s) 186
SetI ASST 5 cut(s) 13, 34, 76, 187, 205
Sse9I AATT 5 cut(s) 60, 122, 139, 166, 174
SsiI CCGC 1 cut(s) 188
SspMI CTAG 4 cut(s) 27, 171, 198, 225
TasI AATT 5 cut(s) 60, 122, 139, 166, 174
Tru1I TTAA 2 cut(s) 6, 146
Tru9I TTAA 2 cut(s) 6, 146
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 228, 304
XbaI TCTAGA 2 cut(s) 170, 197
XspI CTAG 4 cut(s) 27, 171, 198, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.