Rw4G006280

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
12880118 .. 12885831
5714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006280.1

Sequence Viewer

Length: 1305 bp
ATGGGGATTTGTTTCAGTGAACACAAGAAGGAATCCAAGTTATCCAAGTTTACTCAGAAAGCCCAACAAGTAGGATATGACTCCTCGGTATCTCAAGCTCACCCGGATAGAACACCATACGATACCCCTTTGGTTACAAAGAATATCAAAGACCTCCGCCAAAGTCCAGGATATATCAATGTCAACATCTTTACTCACGATGAGATGAGGTTGGCCACAAAAAATTTCAGGTCAGATCTGATTCTTGGTGAAGGTGGGTTTGGAATTGTATACAAAGGAGTCATTGATGACACTGTGAGGCCCGGTTACACGTCCACACAAGTTGCCATTAAGGAGCTTAACCCAGAAGGGTACCAAGGTGATAGGGAATGGCTGGCTGAAGTACACTACTTGGGACAGTTCAGTCATCCTAATCTTGTGAGGCTGATTGGGTACTGTTGTGAGGATGACCACCGCCAATTGGTCTATGAATACATGGCAAGTGGCAGCTTGGAAAAACATCTTTTCCGCAGAGTGGGTTGTACGCTTACATGGACAAGAAGAATGAAGATTGCCTTAGATGCTGCAAAAGGACTTGCTTTTCTTCATGGTGCTGAAAGGCCAGTCATTTACCGTGACTTCAAGACATCAAACATTTTGTTGGATGCGGATTTTAATGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGAAGGACCGATGGGAGACCAAACCCATGTTTCAACACGAGTGATGGGAACATACGGATATGCTGCTCCTGAGTATGTAATGACTGGGCATCTAACGGCTCGAAGCGATGTTTATGGATTTGGAGTAGTGCTACTTGAGATGCTCATTGGAAGGAGAGCAATGGATAAGAGCAGGCCCAGCCGAGAACATAATCTGGTTGAATGGGCTCGGCCACTCTTGAATCATAATAAGAAACTTTTGAGGATTGTAGACCCTCGACTGGAAGGGCAGTACTCACTTAAAACTGCACTGAAGGTGGCCCATCTAGCATACCAATGCCTTAGCCAGAACCCGAAAGGGAGACCCCTTATGAGCCAGGTTGTTGAAATCCTTGAGAGTCTTCAAGCACCAGAACAGCATGACCCTTTGCTTCAAAGTGGAGGTAAAGCTGTAACTCTTTATGAGGCTCCCAAGGGAACCTCTGGAACTCATGCTAAGAGAGATGTAAATGGAAAAGATGGTGGAGGGGGAGGAGAGGTAAGGCGAAGGAGCAACCGGGGAAATGAAAGGAGCCACAGTGAGCCTATGAGTGATCATGATCATCATAGCCCGTCCCCAAGTTTTGTGTCTCGGGAATAG

Protein Analysis

434

Amino Acids

48.64

Weight (kDa)

8.85

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 81 - 353 6.7e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 81 - 350 9.4e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012008)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 402
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 351
AccI GTMKAC 2 cut(s) 270, 936
AciI CCGC 4 cut(s) 157, 454, 508, 647
AcoI YGGCCR 2 cut(s) 213, 896
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 2 cut(s) 399, 998
AfaI GTAC 5 cut(s) 353, 384, 434, 523, 959
AfiI CCNNNNNNNGG 4 cut(s) 460, 514, 685, 946
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 7 cut(s) 622, 720, 887, 907, 1052, 1070, 1100
AjiI CACGTC 1 cut(s) 312
AjnI CCWGG 2 cut(s) 166, 1041
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 5 cut(s) 98, 337, 489, 664, 1115
AluI AGCT 5 cut(s) 98, 337, 489, 664, 1115
Alw26I GTCTC 3 cut(s) 696, 1021, 1299
Ama87I CYCGRG 1 cut(s) 1296
AoxI GGCC 7 cut(s) 213, 299, 599, 676, 860, 896, 984
ApeKI GCWGC 3 cut(s) 486, 563, 749
ApoI RAATTY 1 cut(s) 223
Asp718I GGTACC 1 cut(s) 351
AspS9I GGNCC 4 cut(s) 300, 692, 861, 985
AsuC2I CCSGG 3 cut(s) 104, 303, 1223
AsuHPI GGTGA 3 cut(s) 92, 260, 371
AvaI CYCGRG 1 cut(s) 1296
AvaII GGWCC 1 cut(s) 692
BaeI ACNNNNGTAYC 4 cut(s) 343, 376, 424, 457
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 895
BauI CACGAG 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 1058
BbvI GCAGC 3 cut(s) 498, 550, 736
BccI CCATC 4 cut(s) 691, 724, 996, 1178
BceAI ACGGC 1 cut(s) 798
BciT130I CCWGG 2 cut(s) 168, 1043
BclI TGATCA 2 cut(s) 1258, 1264
BcnI CCSGG 3 cut(s) 104, 303, 1223
BcoDI GTCTC 3 cut(s) 696, 1021, 1299
BfaI CTAG 1 cut(s) 992
BglII AGATCT 1 cut(s) 235
BisI GCNGC 3 cut(s) 487, 564, 750
BlsI GCNGC 3 cut(s) 488, 565, 751
BmcAI AGTACT 1 cut(s) 959
Bme1390I CCNGG 5 cut(s) 104, 168, 303, 1043, 1223
Bme18I GGWCC 1 cut(s) 692
BmeT110I CYCGRG 1 cut(s) 1296
BmgBI CACGTC 1 cut(s) 312
BmgT120I GGNCC 4 cut(s) 300, 692, 861, 985
BmiI GGNNCC 4 cut(s) 353, 1134, 1144, 1238
BmrFI CCNGG 5 cut(s) 104, 168, 303, 1043, 1223
BmrI ACTGGG 1 cut(s) 780
BmsI GCATC 4 cut(s) 550, 634, 784, 816
BmuI ACTGGG 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 1058
Bpu10I CCTNAGC 1 cut(s) 1007
BpuEI CTTGAG 3 cut(s) 78, 842, 1079
BpuMI CCSGG 3 cut(s) 104, 303, 1223
BsaBI GATNNNNATC 1 cut(s) 1263
BsaI GGTCTC 2 cut(s) 696, 1021
BsaJI CCNNGG 4 cut(s) 84, 355, 1137, 1222
BsaXI ACNNNNNCTCC 4 cut(s) 1188, 1218, 1228, 1258
Bsc4I CCNNNNNNNGG 4 cut(s) 460, 514, 685, 946
Bse1I ACTGG 3 cut(s) 602, 775, 951
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 1263
BseBI CCWGG 2 cut(s) 168, 1043
BseDI CCNNGG 4 cut(s) 84, 355, 1137, 1222
BseGI GGATG 3 cut(s) 406, 451, 649
BseJI GATNNNNATC 1 cut(s) 1263
BseLI CCNNNNNNNGG 4 cut(s) 460, 514, 685, 946
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 2 cut(s) 68, 747
BseNI ACTGG 3 cut(s) 602, 775, 951
BseRI GAGGAG 2 cut(s) 73, 1212
BseXI GCAGC 3 cut(s) 498, 550, 736
BseYI CCCAGC 1 cut(s) 863
BsgI GTGCAG 1 cut(s) 957
BshFI GGCC 7 cut(s) 215, 301, 601, 678, 862, 898, 986
BshNI GGYRCC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 1296
BsiSI CCGG 3 cut(s) 104, 303, 1222
BslFI GGGAC 2 cut(s) 408, 1264
BslI CCNNNNNNNGG 4 cut(s) 460, 514, 685, 946
BsmAI GTCTC 3 cut(s) 696, 1021, 1299
BsmFI GGGAC 2 cut(s) 408, 1264
BsnI GGCC 7 cut(s) 215, 301, 601, 678, 862, 898, 986
Bso31I GGTCTC 2 cut(s) 696, 1021
BsoBI CYCGRG 1 cut(s) 1296
Bsp1286I GDGCHC 1 cut(s) 895
Bsp143I GATC 3 cut(s) 235, 1258, 1264
BspACI CCGC 4 cut(s) 157, 454, 508, 647
BspANI GGCC 7 cut(s) 215, 301, 601, 678, 862, 898, 986
BspCNI CTCAG 2 cut(s) 67, 748
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 4 cut(s) 353, 1134, 1144, 1238
BspT107I GGYRCC 1 cut(s) 351
BspTNI GGTCTC 2 cut(s) 696, 1021
BsrDI GCAATG 1 cut(s) 852
BsrI ACTGG 3 cut(s) 602, 775, 951
BssECI CCNNGG 4 cut(s) 84, 355, 1137, 1222
BssMI GATC 3 cut(s) 235, 1258, 1264
BssNAI GTATAC 1 cut(s) 271
BssSI CACGAG 1 cut(s) 723
BssT1I CCWWGG 2 cut(s) 355, 1137
Bst1107I GTATAC 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 723
Bst2UI CCWGG 2 cut(s) 168, 1043
Bst4CI ACNGT 5 cut(s) 295, 399, 437, 614, 1244
BstC8I GCNNGC 2 cut(s) 375, 860
BstDEI CTNAG 5 cut(s) 54, 556, 756, 1007, 1161
BstENI CCTNNNNNAGG 1 cut(s) 683
BstF5I GGATG 3 cut(s) 406, 451, 649
BstKTI GATC 3 cut(s) 238, 1261, 1267
BstMAI GTCTC 3 cut(s) 696, 1021, 1299
BstMBI GATC 3 cut(s) 235, 1258, 1264
BstMWI GCNNNNNNNGC 3 cut(s) 560, 864, 992
BstNI CCWGG 2 cut(s) 168, 1043
BstSCI CCNGG 5 cut(s) 102, 166, 301, 1041, 1221
BstV1I GCAGC 3 cut(s) 498, 550, 736
BstV2I GAAGAC 1 cut(s) 1058
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BstZ17I GTATAC 1 cut(s) 271
BsuRI GGCC 7 cut(s) 215, 301, 601, 678, 862, 898, 986
BtgZI GCGATG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 3 cut(s) 406, 451, 649
BtsIMutI CAGTG 4 cut(s) 22, 291, 974, 1249
Cac8I GCNNGC 2 cut(s) 375, 860
CciI TCATGA 1 cut(s) 1261
Cfr13I GGNCC 4 cut(s) 300, 692, 861, 985
Csp6I GTAC 5 cut(s) 352, 383, 433, 522, 958
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 7 cut(s) 475, 531, 587, 713, 1085, 1157, 1262
CviQI GTAC 5 cut(s) 352, 383, 433, 522, 958
DdeI CTNAG 5 cut(s) 54, 556, 756, 1007, 1161
DpnI GATC 3 cut(s) 237, 1260, 1266
DpnII GATC 3 cut(s) 235, 1258, 1264
DrdI GACNNNNNNGTC 1 cut(s) 402
DseDI GACNNNNNNGTC 1 cut(s) 402
EaeI YGGCCR 2 cut(s) 213, 896
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 355, 1137
Eco24I GRGCYC 1 cut(s) 895
Eco31I GGTCTC 2 cut(s) 696, 1021
Eco47I GGWCC 1 cut(s) 692
Eco57I CTGAAG 2 cut(s) 399, 998
Eco88I CYCGRG 1 cut(s) 1296
EcoNI CCTNNNNNAGG 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 166, 1041
EcoT14I CCWWGG 2 cut(s) 355, 1137
EcoT38I GRGCYC 1 cut(s) 895
ErhI CCWWGG 2 cut(s) 355, 1137
FaeI CATG 7 cut(s) 478, 534, 590, 716, 1088, 1160, 1265
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 2 cut(s) 408, 1264
FatI CATG 7 cut(s) 474, 530, 586, 712, 1084, 1156, 1261
FbaI TGATCA 2 cut(s) 1258, 1264
FblI GTMKAC 2 cut(s) 270, 936
Fnu4HI GCNGC 3 cut(s) 487, 564, 750
FokI GGATG 3 cut(s) 393, 458, 656
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 3 cut(s) 487, 564, 750
FspBI CTAG 1 cut(s) 992
GluI GCNGC 3 cut(s) 487, 564, 750
GsaI CCCAGC 1 cut(s) 867
HaeIII GGCC 7 cut(s) 215, 301, 601, 678, 862, 898, 986
HapII CCGG 3 cut(s) 104, 303, 1222
Hin1II CATG 7 cut(s) 478, 534, 590, 716, 1088, 1160, 1265
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 6 cut(s) 32, 80, 241, 279, 907, 1063
HpaII CCGG 3 cut(s) 104, 303, 1222
HphI GGTGA 3 cut(s) 92, 260, 371
Hpy166II GTNNAC 7 cut(s) 20, 51, 184, 271, 315, 385, 937
Hpy188I TCNGA 4 cut(s) 57, 235, 240, 670
Hpy188III TCNNGA 7 cut(s) 197, 622, 755, 904, 1149, 1262, 1298
Hpy8I GTNNAC 7 cut(s) 20, 51, 184, 271, 315, 385, 937
HpyAV CCTTC 8 cut(s) 22, 245, 341, 683, 831, 944, 973, 1206
HpyCH4III ACNGT 5 cut(s) 295, 399, 437, 614, 1244
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 566, 683, 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 864, 992
HpyF3I CTNAG 5 cut(s) 54, 556, 756, 1007, 1161
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 7 cut(s) 478, 534, 590, 716, 1088, 1160, 1265
KpnI GGTACC 1 cut(s) 355
Ksp22I TGATCA 2 cut(s) 1258, 1264
Kzo9I GATC 3 cut(s) 235, 1258, 1264
LmnI GCTCC 5 cut(s) 334, 757, 1138, 1215, 1236
Lsp1109I GCAGC 3 cut(s) 498, 550, 736
LweI GCATC 4 cut(s) 550, 634, 784, 816
MaeI CTAG 1 cut(s) 992
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 4 cut(s) 133, 305, 614, 1117
MalI GATC 3 cut(s) 237, 1260, 1266
MboI GATC 3 cut(s) 235, 1258, 1264
MboII GAAGA 4 cut(s) 552, 559, 575, 1058
MfeI CAATTG 1 cut(s) 458
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 895
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 3 cut(s) 223, 264, 458
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 3 cut(s) 74, 288, 1072
MmeI TCCRAC 1 cut(s) 621
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 4 cut(s) 330, 339, 654, 966
MslI CAYNNNNRTG 1 cut(s) 1000
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 3 cut(s) 104, 303, 1222
MspR9I CCNGG 5 cut(s) 104, 168, 303, 1043, 1223
MunI CAATTG 1 cut(s) 458
MvaI CCWGG 2 cut(s) 168, 1043
MwoI GCNNNNNNNGC 3 cut(s) 560, 864, 992
NciI CCSGG 3 cut(s) 104, 303, 1223
NdeII GATC 3 cut(s) 235, 1258, 1264
NlaIII CATG 7 cut(s) 478, 534, 590, 716, 1088, 1160, 1265
NlaIV GGNNCC 4 cut(s) 353, 1134, 1144, 1238
NmeAIII GCCGAG 2 cut(s) 874, 893
NmuCI GTSAC 1 cut(s) 614
PagI TCATGA 1 cut(s) 1261
PfeI GAWTC 3 cut(s) 32, 241, 907
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 3 cut(s) 488, 565, 751
PleI GAGTC 3 cut(s) 74, 287, 1071
PpsI GAGTC 3 cut(s) 74, 287, 1071
Psp6I CCWGG 2 cut(s) 166, 1041
PspFI CCCAGC 1 cut(s) 863
PspGI CCWGG 2 cut(s) 166, 1041
PspN4I GGNNCC 4 cut(s) 353, 1134, 1144, 1238
PspPI GGNCC 4 cut(s) 300, 692, 861, 985
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 5 cut(s) 353, 384, 434, 523, 959
RsaNI GTAC 5 cut(s) 352, 383, 433, 522, 958
RseI CAYNNNNRTG 1 cut(s) 1000
SaqAI TTAA 4 cut(s) 330, 339, 654, 966
SatI GCNGC 3 cut(s) 487, 564, 750
Sau3AI GATC 3 cut(s) 235, 1258, 1264
Sau96I GGNCC 4 cut(s) 300, 692, 861, 985
ScaI AGTACT 1 cut(s) 959
SchI GAGTC 3 cut(s) 74, 288, 1072
ScrFI CCNGG 5 cut(s) 104, 168, 303, 1043, 1223
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 4 cut(s) 550, 634, 784, 816
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 1 cut(s) 1000
SmlI CTYRAG 3 cut(s) 93, 821, 1058
SmoI CTYRAG 3 cut(s) 93, 821, 1058
Sse9I AATT 3 cut(s) 223, 264, 458
SsiI CCGC 4 cut(s) 157, 454, 508, 647
SspMI CTAG 1 cut(s) 992
StyD4I CCNGG 5 cut(s) 102, 166, 301, 1041, 1221
StyI CCWWGG 2 cut(s) 355, 1137
TaaI ACNGT 5 cut(s) 295, 399, 437, 614, 1244
TaiI ACGT 1 cut(s) 314
TaqI TCGA 2 cut(s) 787, 943
TaqII GACCGA 1 cut(s) 709
TasI AATT 3 cut(s) 223, 264, 458
TatI WGTACW 2 cut(s) 382, 957
TfiI GAWTC 3 cut(s) 32, 241, 907
Tru1I TTAA 4 cut(s) 330, 339, 654, 966
Tru9I TTAA 4 cut(s) 330, 339, 654, 966
TscAI CASTG 4 cut(s) 22, 298, 981, 1249
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 3 cut(s) 486, 563, 749
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 4 cut(s) 483, 560, 575, 1245
TspGWI ACGGA 1 cut(s) 756
TspRI CASTG 4 cut(s) 22, 298, 981, 1249
VpaK11BI GGWCC 1 cut(s) 692
XagI CCTNNNNNAGG 1 cut(s) 683
XapI RAATTY 1 cut(s) 223
XmiI GTMKAC 2 cut(s) 270, 936
XspI CTAG 1 cut(s) 992
ZrmI AGTACT 1 cut(s) 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.