Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0012008

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG070800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGGGATTTGTTTCAGTGAACACAAGAAGGAATCCAAGTTATCCAAGTTTACTCAGAAAGCCCAACAAGGATATGACTCCTCGGTATCTCAAGCTAACCCGGATAGAACACCATACGATACTCCTTTGGTTACAAAAAATATCAAAGACCTCCGCCAAAGTCCAGGATATATCAATGTCAACATCTTTACTCACGATGAGATGAGGTTGGCCACAAAAAATTTCAGGCCAGATCTGATTCTTGGTGAAGGTGGGTTTGGAATTGTATACAAAGGAGTCATTGATGACACTGTGAGGCCCGGTTACACGTCCACACAAGTTGCCATTAAGGAGCTTAACCCAGAAGGGTACCAAGGTGATAGGGAATGGCTGGCTGAAGTACACTACTTGGGACAGTTCAGTCATCCTAATCTTGTGAGGCTGATTGGGTACTGTTGTGAGGATGACCACCGCCAATTGGTCTATGAATACATGGCAAGTGGCAGCTTGGAAAAACATCTTTTCCGCAGAGTGGGTTGTACGCTTACATGGACAAGAAGAATGAAGATTGCCTTAGATGCTGCAAAAGGACTTGCTTTTCTTCATGGTGCTGAAAGGCCAGTCATTTACCGTGACTTCAAGACATCAAACATTTTGTTGGATGCGGATTTTAATGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGAAGGACCGATGGGAGACCAAACCCATGTTTCAACACGAGTGATGGGAACATACGGATATGCTGCTCCTGAGTATGTAATGACTGGGCATCTAACGGCTCGAAGCGATGTTTATGGATTTGGAGTAGTGCTACTTGAGATGCTCATTGGAAGGAGAGCAATGGATAAGAGCAGGCCCAGCCGAGAACATAATCTAGTTGAATGGGCTCGGCCACTCTTGAATCATAATAAGAAACTTTTGAGGATTGTAGACCCTCGACTGGAAGGGCAGTACTCACTTAAAACTGCACTGAAGGTGGCCCATCTAGCATACCAATGCCTTAGCCAGAACCCGAAAGGGAGACCCCTTATGAGCCAGGTTGTTGAAATCCTTGAGAGTCTTCAAGCACCAGAACAGCATGACCCTTTGCTTCAAAGTGGAGGTAAAGCTGTAACTCTTTATGAGGCTCCCAAGGGAACCTCTGGAACTCATGCTAAGAGAGATGTAAATGGAAAAGATGGTGGAGGGGGAGGAGAGGTAAGGCGAAGGAGCCACAGTGAGCCTATGAGTGATCATGATCATCATAGCCCGTCCCCAAGTTTTGTGTCTCGGGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

427

Amino Acids

47.84

Weight (kDa)

8.85

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 349	1.1e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	81 - 352	7.7e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07180 AT2G07180
fragaria_vesca	FvH4_4g05960 FvH4_4g05960
malus_domestica	MD13G1231900.v1.1 MD16G1236700.v1.1
prunus_persica	Prupe.1G063100_v2.0.a1
pyrus_communis	pycom13g20450 pycom16g19850
rosa_chinensis	RchiOBHm_Chr4g0397161
rosa_laevigata	RLG00000009442
rosa_multiflora	Rmu_sc0001796.1_g000024
rosa_roxburghii	Rroxscaffold_5G00342140
rosa_rugosa	Rorug03G0344400 Rorug03G0344500
rosa_samantha	Rh4AG077700 Rh4CG082900 Rh4DG070800
rosa_wichuraiana	Rw4G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	399
Acc65I	GGTACC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	348
AccI	GTMKAC	2 cut(s)	267, 933
AciI	CCGC	4 cut(s)	154, 451, 505, 644
AcoI	YGGCCR	2 cut(s)	210, 893
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	396, 995
AfaI	GTAC	5 cut(s)	350, 381, 431, 520, 956
AfiI	CCNNNNNNNGG	4 cut(s)	457, 511, 682, 943
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	7 cut(s)	619, 717, 884, 904, 1049, 1067, 1097
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	2 cut(s)	163, 1038
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	5 cut(s)	95, 334, 486, 661, 1112
AluI	AGCT	5 cut(s)	95, 334, 486, 661, 1112
Alw26I	GTCTC	3 cut(s)	693, 1018, 1275
Ama87I	CYCGRG	1 cut(s)	1272
AoxI	GGCC	8 cut(s)	210, 227, 296, 596, 673, 857, 893, 981
ApeKI	GCWGC	3 cut(s)	483, 560, 746
ApoI	RAATTY	1 cut(s)	220
Asp718I	GGTACC	1 cut(s)	348
AspS9I	GGNCC	4 cut(s)	297, 689, 858, 982
AsuC2I	CCSGG	2 cut(s)	101, 300
AsuHPI	GGTGA	2 cut(s)	257, 368
AvaI	CYCGRG	1 cut(s)	1272
AvaII	GGWCC	1 cut(s)	689
BaeI	ACNNNNGTAYC	4 cut(s)	340, 373, 421, 454
BalI	TGGCCA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	892
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	1055
BbvI	GCAGC	3 cut(s)	495, 547, 733
BccI	CCATC	4 cut(s)	688, 721, 993, 1175
BceAI	ACGGC	1 cut(s)	795
BciT130I	CCWGG	2 cut(s)	165, 1040
BclI	TGATCA	2 cut(s)	1234, 1240
BcnI	CCSGG	2 cut(s)	101, 300
BcoDI	GTCTC	3 cut(s)	693, 1018, 1275
BfaI	CTAG	2 cut(s)	878, 989
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	3 cut(s)	484, 561, 747
BlsI	GCNGC	3 cut(s)	485, 562, 748
BmcAI	AGTACT	1 cut(s)	956
Bme1390I	CCNGG	4 cut(s)	101, 165, 300, 1040
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	1 cut(s)	1272
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	4 cut(s)	297, 689, 858, 982
BmiI	GGNNCC	4 cut(s)	350, 1131, 1141, 1214
BmrFI	CCNGG	4 cut(s)	101, 165, 300, 1040
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	4 cut(s)	547, 631, 781, 813
BmuI	ACTGGG	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	1055
Bpu10I	CCTNAGC	1 cut(s)	1004
BpuEI	CTTGAG	3 cut(s)	75, 839, 1076
BpuMI	CCSGG	2 cut(s)	101, 300
BsaBI	GATNNNNATC	1 cut(s)	1239
BsaI	GGTCTC	2 cut(s)	693, 1018
BsaJI	CCNNGG	3 cut(s)	81, 352, 1134
BsaXI	ACNNNNNCTCC	4 cut(s)	1185, 1204, 1215, 1234
Bsc4I	CCNNNNNNNGG	4 cut(s)	457, 511, 682, 943
Bse1I	ACTGG	3 cut(s)	599, 772, 948
Bse3DI	GCAATG	1 cut(s)	849
Bse8I	GATNNNNATC	1 cut(s)	1239
BseBI	CCWGG	2 cut(s)	165, 1040
BseDI	CCNNGG	3 cut(s)	81, 352, 1134
BseGI	GGATG	3 cut(s)	403, 448, 646
BseJI	GATNNNNATC	1 cut(s)	1239
BseLI	CCNNNNNNNGG	4 cut(s)	457, 511, 682, 943
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	2 cut(s)	68, 744
BseNI	ACTGG	3 cut(s)	599, 772, 948
BseRI	GAGGAG	2 cut(s)	70, 1209
BseXI	GCAGC	3 cut(s)	495, 547, 733
BseYI	CCCAGC	1 cut(s)	860
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	8 cut(s)	212, 229, 298, 598, 675, 859, 895, 983
BshNI	GGYRCC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	1272
BsiSI	CCGG	2 cut(s)	101, 300
BslFI	GGGAC	2 cut(s)	405, 1240
BslI	CCNNNNNNNGG	4 cut(s)	457, 511, 682, 943
BsmAI	GTCTC	3 cut(s)	693, 1018, 1275
BsmFI	GGGAC	2 cut(s)	405, 1240
BsnI	GGCC	8 cut(s)	212, 229, 298, 598, 675, 859, 895, 983
Bso31I	GGTCTC	2 cut(s)	693, 1018
BsoBI	CYCGRG	1 cut(s)	1272
Bsp1286I	GDGCHC	1 cut(s)	892
Bsp143I	GATC	3 cut(s)	232, 1234, 1240
BspACI	CCGC	4 cut(s)	154, 451, 505, 644
BspANI	GGCC	8 cut(s)	212, 229, 298, 598, 675, 859, 895, 983
BspCNI	CTCAG	2 cut(s)	67, 745
BspHI	TCATGA	1 cut(s)	1237
BspLI	GGNNCC	4 cut(s)	350, 1131, 1141, 1214
BspT107I	GGYRCC	1 cut(s)	348
BspTNI	GGTCTC	2 cut(s)	693, 1018
BsrDI	GCAATG	1 cut(s)	849
BsrI	ACTGG	3 cut(s)	599, 772, 948
BssECI	CCNNGG	3 cut(s)	81, 352, 1134
BssMI	GATC	3 cut(s)	232, 1234, 1240
BssNAI	GTATAC	1 cut(s)	268
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	2 cut(s)	352, 1134
Bst1107I	GTATAC	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	165, 1040
Bst4CI	ACNGT	5 cut(s)	292, 396, 434, 611, 1220
BstC8I	GCNNGC	2 cut(s)	372, 857
BstDEI	CTNAG	5 cut(s)	54, 553, 753, 1004, 1158
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	403, 448, 646
BstKTI	GATC	3 cut(s)	235, 1237, 1243
BstMAI	GTCTC	3 cut(s)	693, 1018, 1275
BstMBI	GATC	3 cut(s)	232, 1234, 1240
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 861, 989
BstNI	CCWGG	2 cut(s)	165, 1040
BstSCI	CCNGG	4 cut(s)	99, 163, 298, 1038
BstV1I	GCAGC	3 cut(s)	495, 547, 733
BstV2I	GAAGAC	1 cut(s)	1055
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BstZ17I	GTATAC	1 cut(s)	268
BsuRI	GGCC	8 cut(s)	212, 229, 298, 598, 675, 859, 895, 983
BtgZI	GCGATG	1 cut(s)	804
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	403, 448, 646
BtsIMutI	CAGTG	4 cut(s)	22, 288, 971, 1225
Cac8I	GCNNGC	2 cut(s)	372, 857
CciI	TCATGA	1 cut(s)	1237
Cfr13I	GGNCC	4 cut(s)	297, 689, 858, 982
Csp6I	GTAC	5 cut(s)	349, 380, 430, 519, 955
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	7 cut(s)	472, 528, 584, 710, 1082, 1154, 1238
CviQI	GTAC	5 cut(s)	349, 380, 430, 519, 955
DdeI	CTNAG	5 cut(s)	54, 553, 753, 1004, 1158
DpnI	GATC	3 cut(s)	234, 1236, 1242
DpnII	GATC	3 cut(s)	232, 1234, 1240
DrdI	GACNNNNNNGTC	1 cut(s)	399
DseDI	GACNNNNNNGTC	1 cut(s)	399
EaeI	YGGCCR	2 cut(s)	210, 893
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	352, 1134
Eco24I	GRGCYC	1 cut(s)	892
Eco31I	GGTCTC	2 cut(s)	693, 1018
Eco47I	GGWCC	1 cut(s)	689
Eco57I	CTGAAG	2 cut(s)	396, 995
Eco88I	CYCGRG	1 cut(s)	1272
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	163, 1038
EcoT14I	CCWWGG	2 cut(s)	352, 1134
EcoT38I	GRGCYC	1 cut(s)	892
ErhI	CCWWGG	2 cut(s)	352, 1134
FaeI	CATG	7 cut(s)	475, 531, 587, 713, 1085, 1157, 1241
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	2 cut(s)	405, 1240
FatI	CATG	7 cut(s)	471, 527, 583, 709, 1081, 1153, 1237
FbaI	TGATCA	2 cut(s)	1234, 1240
FblI	GTMKAC	2 cut(s)	267, 933
Fnu4HI	GCNGC	3 cut(s)	484, 561, 747
FokI	GGATG	3 cut(s)	390, 455, 653
FriOI	GRGCYC	1 cut(s)	892
Fsp4HI	GCNGC	3 cut(s)	484, 561, 747
FspBI	CTAG	2 cut(s)	878, 989
GluI	GCNGC	3 cut(s)	484, 561, 747
GsaI	CCCAGC	1 cut(s)	864
HaeIII	GGCC	8 cut(s)	212, 229, 298, 598, 675, 859, 895, 983
HapII	CCGG	2 cut(s)	101, 300
Hin1II	CATG	7 cut(s)	475, 531, 587, 713, 1085, 1157, 1241
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	6 cut(s)	32, 77, 238, 276, 904, 1060
HpaII	CCGG	2 cut(s)	101, 300
HphI	GGTGA	2 cut(s)	257, 368
Hpy166II	GTNNAC	7 cut(s)	20, 51, 181, 268, 312, 382, 934
Hpy188I	TCNGA	3 cut(s)	57, 237, 667
Hpy188III	TCNNGA	7 cut(s)	194, 619, 752, 901, 1146, 1238, 1274
Hpy8I	GTNNAC	7 cut(s)	20, 51, 181, 268, 312, 382, 934
HpyAV	CCTTC	8 cut(s)	22, 242, 338, 680, 828, 941, 970, 1203
HpyCH4III	ACNGT	5 cut(s)	292, 396, 434, 611, 1220
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	563, 680, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 861, 989
HpyF3I	CTNAG	5 cut(s)	54, 553, 753, 1004, 1158
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	7 cut(s)	475, 531, 587, 713, 1085, 1157, 1241
KpnI	GGTACC	1 cut(s)	352
Ksp22I	TGATCA	2 cut(s)	1234, 1240
Kzo9I	GATC	3 cut(s)	232, 1234, 1240
LmnI	GCTCC	4 cut(s)	331, 754, 1135, 1212
Lsp1109I	GCAGC	3 cut(s)	495, 547, 733
LweI	GCATC	4 cut(s)	547, 631, 781, 813
MaeI	CTAG	2 cut(s)	878, 989
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	4 cut(s)	130, 302, 611, 1114
MalI	GATC	3 cut(s)	234, 1236, 1242
MboI	GATC	3 cut(s)	232, 1234, 1240
MboII	GAAGA	4 cut(s)	549, 556, 572, 1055
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	892
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	3 cut(s)	220, 261, 455
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	3 cut(s)	71, 285, 1069
MmeI	TCCRAC	1 cut(s)	618
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	4 cut(s)	327, 336, 651, 963
MslI	CAYNNNNRTG	1 cut(s)	997
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	2 cut(s)	101, 300
MspR9I	CCNGG	4 cut(s)	101, 165, 300, 1040
MunI	CAATTG	1 cut(s)	455
MvaI	CCWGG	2 cut(s)	165, 1040
MwoI	GCNNNNNNNGC	3 cut(s)	557, 861, 989
NciI	CCSGG	2 cut(s)	101, 300
NdeII	GATC	3 cut(s)	232, 1234, 1240
NlaIII	CATG	7 cut(s)	475, 531, 587, 713, 1085, 1157, 1241
NlaIV	GGNNCC	4 cut(s)	350, 1131, 1141, 1214
NmeAIII	GCCGAG	2 cut(s)	871, 890
NmuCI	GTSAC	1 cut(s)	611
PagI	TCATGA	1 cut(s)	1237
PfeI	GAWTC	3 cut(s)	32, 238, 904
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	485, 562, 748
PleI	GAGTC	3 cut(s)	71, 284, 1068
PpsI	GAGTC	3 cut(s)	71, 284, 1068
Psp6I	CCWGG	2 cut(s)	163, 1038
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	163, 1038
PspN4I	GGNNCC	4 cut(s)	350, 1131, 1141, 1214
PspPI	GGNCC	4 cut(s)	297, 689, 858, 982
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	5 cut(s)	350, 381, 431, 520, 956
RsaNI	GTAC	5 cut(s)	349, 380, 430, 519, 955
RseI	CAYNNNNRTG	1 cut(s)	997
SaqAI	TTAA	4 cut(s)	327, 336, 651, 963
SatI	GCNGC	3 cut(s)	484, 561, 747
Sau3AI	GATC	3 cut(s)	232, 1234, 1240
Sau96I	GGNCC	4 cut(s)	297, 689, 858, 982
ScaI	AGTACT	1 cut(s)	956
SchI	GAGTC	3 cut(s)	71, 285, 1069
ScrFI	CCNGG	4 cut(s)	101, 165, 300, 1040
SduI	GDGCHC	1 cut(s)	892
SfaNI	GCATC	4 cut(s)	547, 631, 781, 813
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	997
SmlI	CTYRAG	3 cut(s)	90, 818, 1055
SmoI	CTYRAG	3 cut(s)	90, 818, 1055
Sse9I	AATT	3 cut(s)	220, 261, 455
SsiI	CCGC	4 cut(s)	154, 451, 505, 644
SspMI	CTAG	2 cut(s)	878, 989
StyD4I	CCNGG	4 cut(s)	99, 163, 298, 1038
StyI	CCWWGG	2 cut(s)	352, 1134
TaaI	ACNGT	5 cut(s)	292, 396, 434, 611, 1220
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	784, 940
TaqII	GACCGA	1 cut(s)	706
TasI	AATT	3 cut(s)	220, 261, 455
TatI	WGTACW	2 cut(s)	379, 954
TfiI	GAWTC	3 cut(s)	32, 238, 904
Tru1I	TTAA	4 cut(s)	327, 336, 651, 963
Tru9I	TTAA	4 cut(s)	327, 336, 651, 963
TscAI	CASTG	4 cut(s)	22, 295, 978, 1225
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	3 cut(s)	483, 560, 746
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	3 cut(s)	480, 557, 572
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	4 cut(s)	22, 295, 978, 1225
VpaK11BI	GGWCC	1 cut(s)	689
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	1 cut(s)	220
XmiI	GTMKAC	2 cut(s)	267, 933
XspI	CTAG	2 cut(s)	878, 989
ZrmI	AGTACT	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.