Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003724

Physical Location & Seq

Genomic Coordinates Reverse (-)

5522543 .. 5522971

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCAGATGATGAATATTCAGTATCACAGTCATCAGGCATTGCCAATCCTCATTATTCGAATGGCGTCAGAAGGTTCAGTAATCCATATTTTGCAGACAGAGACGGTGAGAGCACTCCTGTGGAGTCATACACCCAGCTTCCAGAGAACTCTGAAGACCAGAGTCTAGAGGATACTGCCGAAGGAGCTACACAAAACACGGATGACTATTGCAAAGAGGTTCGCTGTATTGAAATGGAAGAGTCAAGCAGGGACAAGAACCATGGATCCCTTTCCTCATCGACCGTTGGTAATGAAGGAACATTCTCCTTGACATTAGATAGGGATACAAGTGTAGCTGGTCAAGAAACAACCCCTATGGATGCAGCTAGAGAGAGTAGTAGGATGCAAGATGTGCGAACAGCAGAATGTAGATATCTCAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008144 GO:0008150 GO:0009506 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0030054 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035371 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901265 GO:1901363 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

143

Amino Acids

15.79

Weight (kDa)

4.34

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21300 AT2G21300 AT2G21300 AT2G21300 AT2G21300 AT4G38950 AT4G38950 AT4G38950 AT4G38950 AT4G38950
fragaria_vesca	FvH4_2g10420 FvH4_4g06160
malus_domestica	MD00G1086100.v1.1 MD10G1063300.v1.1
prunus_persica	Prupe.8G084900_v2.0.a1 Prupe.8G084900_v2.0.a1 Prupe.8G084900_v2.0.a1 Prupe.8G084900_v2.0.a1 Prupe.8G084900_v2.0.a1
pyrus_communis	pycom05g04640 pycom10g04890
rosa_chinensis	RchiOBHm_Chr6g0267891
rosa_laevigata	RLG00000013970
rosa_multiflora	Rmu_sc0000434.1_g000005 Rmu_sc0005400.1_g000005
rosa_roxburghii	Rroxscaffold_7G00200350
rosa_rugosa	Rorug06G0034600 Rorug06G0034600 Rorug06G0034600
rosa_samantha	Rh6AG156800 Rh6BG158000 Rh6CG158200 Rh6DG143200
rosa_wichuraiana	Rw6G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	261, 274
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	233
AleI	CACNNNNGTG	1 cut(s)	119
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
AluBI	AGCT	4 cut(s)	139, 188, 338, 368
AluI	AGCT	4 cut(s)	139, 188, 338, 368
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	261, 274
ApeKI	GCWGC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	59
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BamHI	GGATCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	377
BciVI	GTATCC	2 cut(s)	166, 319
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	3 cut(s)	167, 369, 427
BfuI	GTATCC	2 cut(s)	166, 319
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	2 cut(s)	352, 375
BoxI	GACNNNNGTC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	3 cut(s)	208, 367, 390
BseMI	GCAATG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	377
BseYI	CCCAGC	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	266
Bsp19I	CCATGG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	261, 274
BspT104I	TTCGAA	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	266
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	30, 107, 286
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	3 cut(s)	208, 367, 390
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	266
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 394
BstPAI	GACNNNNGTC	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuI	GTATCC	2 cut(s)	166, 319
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	208, 367, 390
CseI	GACGC	1 cut(s)	55
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	4 cut(s)	139, 188, 338, 368
CviKI_1	RGCY	4 cut(s)	139, 188, 338, 368
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	266
FaiI	YATR	4 cut(s)	88, 130, 264, 359
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	3 cut(s)	215, 374, 397
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	3 cut(s)	167, 369, 427
GluI	GCNGC	1 cut(s)	366
GsaI	CCCAGC	1 cut(s)	139
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	3 cut(s)	125, 163, 242
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	7, 71, 154
Hpy188III	TCNNGA	3 cut(s)	143, 167, 344
HpyAV	CCTTC	3 cut(s)	66, 176, 290
HpyCH4III	ACNGT	3 cut(s)	30, 107, 286
HpyCH4V	TGCA	4 cut(s)	95, 213, 365, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 394
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	7 cut(s)	21, 132, 149, 156, 173, 235, 324
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	2 cut(s)	352, 375
MaeI	CTAG	3 cut(s)	167, 369, 427
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	167, 251
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	134, 172, 251
MnlI	CCTC	4 cut(s)	60, 163, 211, 286
MslI	CAYNNNNRTG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	185, 394
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	3 cut(s)	133, 171, 250
PpsI	GAGTC	3 cut(s)	133, 171, 250
PshAI	GACNNNNGTC	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	119
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	266
SchI	GAGTC	3 cut(s)	134, 172, 251
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	6 cut(s)	77, 141, 190, 222, 340, 370
SfaNI	GCATC	2 cut(s)	352, 375
SfuI	TTCGAA	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	3 cut(s)	167, 369, 427
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	30, 107, 286
TaqI	TCGA	2 cut(s)	59, 281
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	27, 309
TspGWI	ACGGA	1 cut(s)	215
XbaI	TCTAGA	1 cut(s)	166
XspI	CTAG	3 cut(s)	167, 369, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.