Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005400.1

Orthogroup ID

OG0003724

Physical Location & Seq

Genomic Coordinates Reverse (-)

39000 .. 40590

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005400.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgggggcaattggtagggaagacctgatgaagtgggagaagatgcagggagcaagtgctcgcgaagagaagattctagttttggtcaggttgaggcccttaaatgagaaggagcttgcatcgaatgaagtatcagattgggaatgcatcaatgacaccaccatcttataccgaaacacgctgcgggaagggtctacatttccaaatgcctatacatttgacaaagtatttcgaggtggttgccctacaagacaggtttatgaagaaggggcccaacaaattgctctttcagttgtcaatggtatcaactctagtatttttgcatatggtcaaacaagcagtgggaaaacgtacaccatgaatggtatcacagagtttacagtagcggaaatatttgactatatacataggcatgaggaaagagcttttgttgttaagttttcagcgattgagatatacaatgaagctgttcgagaccttctaagcacagataatactccacttaggctactagatgatcctgagcgtgggactattatagagaaaatcactgaggaaactttgagggattggagccatttgaaggagcttctttctatttgtgaagctcaaagacagataggggagaccttattgaacgaaaaaagctccagatcacatcaaattattagattggcaatcgaaagttctgctcgtgagttcttaggcaaaggaaactcaaccacccttgcagctagtgtgaattttgtagacttggcaggcagtgagcgtgcatctcagtcattatcagctgggacaagattaaaagaaggctgccacatcaatcgcagtttgctaactcttagcactgttatacgcaagctaaggttgtctagtccctcctctttcgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008144 GO:0008150 GO:0009506 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0030054 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035371 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901265 GO:1901363 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

297

Amino Acids

33.33

Weight (kDa)

5.87

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21300 AT2G21300 AT2G21300 AT2G21300 AT2G21300 AT4G38950 AT4G38950 AT4G38950 AT4G38950 AT4G38950
fragaria_vesca	FvH4_2g10420 FvH4_4g06160
malus_domestica	MD00G1086100.v1.1 MD10G1063300.v1.1
prunus_persica	Prupe.8G084900_v2.0.a1 Prupe.8G084900_v2.0.a1 Prupe.8G084900_v2.0.a1 Prupe.8G084900_v2.0.a1 Prupe.8G084900_v2.0.a1
pyrus_communis	pycom05g04640 pycom10g04890
rosa_chinensis	RchiOBHm_Chr6g0267891
rosa_laevigata	RLG00000013970
rosa_multiflora	Rmu_sc0000434.1_g000005 Rmu_sc0005400.1_g000005
rosa_roxburghii	Rroxscaffold_7G00200350
rosa_rugosa	Rorug06G0034600 Rorug06G0034600 Rorug06G0034600
rosa_samantha	Rh6AG156800 Rh6BG158000 Rh6CG158200 Rh6DG143200
rosa_wichuraiana	Rw6G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	194, 750
AccII	CGCG	1 cut(s)	63
AciI	CCGC	2 cut(s)	184, 386
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	742
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	527, 583
AgsI	TTSAA	2 cut(s)	583, 637
AluBI	AGCT	9 cut(s)	115, 425, 467, 589, 608, 648, 734, 791, 862
AluI	AGCT	9 cut(s)	115, 425, 467, 589, 608, 648, 734, 791, 862
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	2 cut(s)	468, 620
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	2 cut(s)	95, 270
ApaI	GGGCCC	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	181, 731, 813
ApoI	RAATTY	1 cut(s)	742
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	3 cut(s)	96, 270, 271
BaeGI	GKGCMC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	168, 743, 800
BccI	CCATC	1 cut(s)	170
BcgI	CGANNNNNNTGC	4 cut(s)	222, 256, 671, 705
BcoDI	GTCTC	2 cut(s)	468, 620
BfaI	CTAG	5 cut(s)	77, 312, 512, 735, 873
BisI	GCNGC	3 cut(s)	182, 732, 814
BlsI	GCNGC	3 cut(s)	183, 733, 815
BmgT120I	GGNCC	3 cut(s)	96, 270, 271
BmiI	GGNNCC	3 cut(s)	271, 272, 575
BmsI	GCATC	4 cut(s)	33, 128, 156, 782
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	634
Bpu10I	CCTNAGC	2 cut(s)	522, 863
BsaI	GGTCTC	2 cut(s)	468, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 583
BseLI	CCNNNNNNNGG	2 cut(s)	527, 583
BseMII	CTCAG	3 cut(s)	513, 543, 791
BseRI	GAGGAG	1 cut(s)	871
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	168, 743, 800
BseYI	CCCAGC	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	97, 272
BsiHKAI	GWGCWC	1 cut(s)	61
BslFI	GGGAC	3 cut(s)	544, 808, 861
BslI	CCNNNNNNNGG	2 cut(s)	527, 583
BsmAI	GTCTC	2 cut(s)	468, 620
BsmFI	GGGAC	3 cut(s)	544, 808, 861
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	97, 272
Bso31I	GGTCTC	2 cut(s)	468, 620
Bsp120I	GGGCCC	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	61, 274
Bsp143I	GATC	2 cut(s)	517, 653
Bsp68I	TCGCGA	1 cut(s)	63
BspACI	CCGC	2 cut(s)	184, 386
BspANI	GGCC	2 cut(s)	97, 272
BspCNI	CTCAG	3 cut(s)	514, 544, 790
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	271, 272, 575
BspPI	GGATC	1 cut(s)	512
BspTNI	GGTCTC	2 cut(s)	468, 620
BssMI	GATC	2 cut(s)	517, 653
BssSI	CACGAG	1 cut(s)	693
Bst2BI	CACGAG	1 cut(s)	693
Bst4CI	ACNGT	2 cut(s)	382, 850
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	5 cut(s)	61, 117, 760, 771, 860
BstDEI	CTNAG	8 cut(s)	482, 503, 522, 552, 703, 777, 842, 863
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	520, 656
BstMAI	GTCTC	2 cut(s)	468, 620
BstMBI	GATC	2 cut(s)	517, 653
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	168, 743, 800
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	97, 272
BtsI	GCAGTG	2 cut(s)	346, 769
BtsIMutI	CAGTG	4 cut(s)	346, 549, 769, 846
BtuMI	TCGCGA	1 cut(s)	63
Cac8I	GCNNGC	5 cut(s)	61, 117, 760, 771, 860
Cfr13I	GGNCC	3 cut(s)	96, 270, 271
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	358, 413
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	8 cut(s)	482, 503, 522, 552, 703, 777, 842, 863
DpnI	GATC	2 cut(s)	519, 655
DpnII	GATC	2 cut(s)	517, 653
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	274
Eco31I	GGTCTC	2 cut(s)	468, 620
EcoO109I	RGGNCCY	2 cut(s)	96, 270
EcoT22I	ATGCAT	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	274
FaeI	CATG	2 cut(s)	361, 416
FaqI	GGGAC	3 cut(s)	544, 808, 861
FatI	CATG	2 cut(s)	357, 412
FauI	CCCGC	1 cut(s)	177
FauNDI	CATATG	1 cut(s)	325
FblI	GTMKAC	2 cut(s)	194, 750
Fnu4HI	GCNGC	3 cut(s)	182, 732, 814
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	182, 732, 814
FspBI	CTAG	5 cut(s)	77, 312, 512, 735, 873
GluI	GCNGC	3 cut(s)	182, 732, 814
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	97, 272
Hin1II	CATG	2 cut(s)	361, 416
HinfI	GANTC	1 cut(s)	73
Hpy166II	GTNNAC	4 cut(s)	195, 354, 378, 751
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	5 cut(s)	62, 473, 521, 651, 695
Hpy8I	GTNNAC	4 cut(s)	195, 354, 378, 751
HpyAV	CCTTC	6 cut(s)	103, 182, 260, 488, 577, 803
HpyCH4III	ACNGT	2 cut(s)	382, 850
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	6 cut(s)	46, 119, 147, 323, 731, 773
HpyF3I	CTNAG	8 cut(s)	482, 503, 522, 552, 703, 777, 842, 863
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	2 cut(s)	361, 416
Kzo9I	GATC	2 cut(s)	517, 653
LmnI	GCTCC	5 cut(s)	50, 112, 573, 586, 653
LpnPI	CCDG	8 cut(s)	32, 38, 73, 239, 534, 664, 744, 777
Lsp1109I	GCAGC	3 cut(s)	168, 743, 800
LweI	GCATC	4 cut(s)	33, 128, 156, 782
MaeI	CTAG	5 cut(s)	77, 312, 512, 735, 873
MaeII	ACGT	1 cut(s)	350
MalI	GATC	2 cut(s)	519, 655
MboI	GATC	2 cut(s)	517, 653
MboII	GAAGA	5 cut(s)	32, 52, 77, 82, 275
MfeI	CAATTG	1 cut(s)	9
MhlI	GDGCHC	2 cut(s)	61, 274
MluCI	AATT	4 cut(s)	9, 279, 663, 742
MnlI	CCTC	7 cut(s)	87, 227, 409, 547, 558, 889, 892
Mph1103I	ATGCAT	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	3 cut(s)	101, 435, 803
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	791
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	149
MvnI	CGCG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	2 cut(s)	517, 653
NlaIII	CATG	2 cut(s)	361, 416
NlaIV	GGNNCC	3 cut(s)	271, 272, 575
NruI	TCGCGA	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	183, 733, 815
PspFI	CCCAGC	1 cut(s)	791
PspN4I	GGNNCC	3 cut(s)	271, 272, 575
PspOMI	GGGCCC	1 cut(s)	270
PspPI	GGNCC	3 cut(s)	96, 270, 271
PvuII	CAGCTG	1 cut(s)	791
RruI	TCGCGA	1 cut(s)	63
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	101, 435, 803
SatI	GCNGC	3 cut(s)	182, 732, 814
Sau3AI	GATC	2 cut(s)	517, 653
Sau96I	GGNCC	3 cut(s)	96, 270, 271
SduI	GDGCHC	2 cut(s)	61, 274
SfaNI	GCATC	4 cut(s)	33, 128, 156, 782
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	4 cut(s)	9, 279, 663, 742
SsiI	CCGC	2 cut(s)	184, 386
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	5 cut(s)	77, 312, 512, 735, 873
TaaI	ACNGT	2 cut(s)	382, 850
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	4 cut(s)	122, 232, 472, 681
TasI	AATT	4 cut(s)	9, 279, 663, 742
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	101, 435, 803
Tru9I	TTAA	3 cut(s)	101, 435, 803
TscAI	CASTG	4 cut(s)	346, 556, 769, 853
TseI	GCWGC	3 cut(s)	181, 731, 813
TspDTI	ATGAA	5 cut(s)	44, 141, 276, 374, 477
TspRI	CASTG	4 cut(s)	346, 556, 769, 853
XapI	RAATTY	1 cut(s)	742
XmiI	GTMKAC	2 cut(s)	194, 750
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	5 cut(s)	77, 312, 512, 735, 873
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.