FvH4_4g06990

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
6334465 .. 6334713
249 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06990.t1

Sequence Viewer

Length: 249 bp
ATGGAGGCTCATAAAGAGAGAAGAGAGCAGATGGAGAAAGAGGCAAAGAAGAATGCCACCACTACTACTAACGGTCGCGGTCATGGAGGAGTTGACGATCCGGTGGCGAAGGCGGTGATTCGAGAGTCCATAATCAGTGACAGCAGCCATGATAAGGGTCATGATGATCAAAAGGGTGGAGCTCAACACCCTGATGATGTTCTTGTTTTTTCCCGATGTGTTCATAAAATTGACTCTTCACTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.02

Weight (kDa)

6.04

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19320
fragaria_vesca FvH4_4g06990
prunus_persica Prupe.1G073300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0214671
rosa_multiflora Rmu_sc0003033.1_g000070
rosa_roxburghii Rroxscaffold_5G00344070
rosa_rugosa Rorug04G0013900
rosa_samantha Rh4BG089800 Rh4DG084400
rosa_wichuraiana Rw4G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 78, 113
AclWI GGATC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw21I GWGCWC 1 cut(s) 184
AlwI GGATC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 127
BanII GRGCYC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 25
BclI TGATCA 1 cut(s) 166
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 154
BsmI GAATGC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 97, 166
BspACI CCGC 2 cut(s) 78, 113
BspFNI CGCG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 160
BspPI GGATC 1 cut(s) 92
BssMI GATC 2 cut(s) 97, 166
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 16, 241
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 2 cut(s) 100, 169
BstMBI GATC 2 cut(s) 97, 166
BstMCI CGRYCG 1 cut(s) 76
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 142
CciI TCATGA 1 cut(s) 160
CviAII CATG 3 cut(s) 83, 149, 161
CviJI RGCY 3 cut(s) 8, 147, 182
CviKI_1 RGCY 3 cut(s) 8, 147, 182
DpnI GATC 2 cut(s) 99, 168
DpnII GATC 2 cut(s) 97, 166
Eam1104I CTCTTC 2 cut(s) 16, 241
EarI CTCTTC 2 cut(s) 16, 241
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 3 cut(s) 86, 152, 164
FaiI YATR 6 cut(s) 12, 84, 131, 150, 162, 225
FatI CATG 3 cut(s) 82, 148, 160
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 145
HapII CCGG 1 cut(s) 101
Hin1II CATG 3 cut(s) 86, 152, 164
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 3 cut(s) 118, 125, 233
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 122, 161, 213
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 74
Hsp92II CATG 3 cut(s) 86, 152, 164
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 97, 166
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 2 cut(s) 114, 204
Lsp1109I GCAGC 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 99, 168
MboI GATC 2 cut(s) 97, 166
MboII GAAGA 3 cut(s) 33, 61, 228
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 1 cut(s) 228
MlyI GAGTC 2 cut(s) 134, 227
MnlI CCTC 2 cut(s) 34, 80
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 58
MvnI CGCG 1 cut(s) 78
NdeII GATC 2 cut(s) 97, 166
NlaIII CATG 3 cut(s) 86, 152, 164
NmuCI GTSAC 1 cut(s) 137
PagI TCATGA 1 cut(s) 160
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 2 cut(s) 133, 227
PpsI GAGTC 2 cut(s) 133, 227
Psp124BI GAGCTC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 192
SacI GAGCTC 1 cut(s) 184
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 2 cut(s) 97, 166
SchI GAGTC 2 cut(s) 134, 227
SduI GDGCHC 1 cut(s) 184
SetI ASST 1 cut(s) 184
SgeI CNNG 9 cut(s) 89, 95, 113, 134, 161, 173, 203, 215, 225
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 228
SsiI CCGC 2 cut(s) 78, 113
SstI GAGCTC 1 cut(s) 184
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 121
TasI AATT 1 cut(s) 228
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.