Rh4DG084400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
12800743 .. 12800985
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG084400.1

Sequence Viewer

Length: 243 bp
ATGGAGGCTCACAAAGAGAGGAGAGAGCAGATGGAGAATGAGGAAAAGAAGAATGCTACCACCACTACTAGTTGCTGCCGTGGAGGAGTTGCCGATCCGGTGGCGAAGGCGGTTATTCGAGAATCCATAATCAGTGACAGTAGCGATGGTAAGGGTCGTGATGAAAAGGGTGGAGCTCAACACCCTGATGATGTTCTTGCTTTTTCCCGATGCGTTAACACAATTGACTCTTCACTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.69

Weight (kDa)

5.15

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19320
fragaria_vesca FvH4_4g06990
prunus_persica Prupe.1G073300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0214671
rosa_multiflora Rmu_sc0003033.1_g000070
rosa_roxburghii Rroxscaffold_5G00344070
rosa_rugosa Rorug04G0013900
rosa_samantha Rh4BG089800 Rh4DG084400
rosa_wichuraiana Rw4G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 89
AhlI ACTAGT 1 cut(s) 68
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 178
AlwI GGATC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 25, 140
BceAI ACGGC 1 cut(s) 63
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
BmsI GCATC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 34, 99
BseXI GCAGC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 98
BsmI GAATGC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 79
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 139
CviJI RGCY 2 cut(s) 8, 176
CviKI_1 RGCY 2 cut(s) 8, 176
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 178
FaiI YATR 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 76
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 76
HapII CCGG 1 cut(s) 98
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 122, 227
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 119, 158, 207
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 140
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 2 cut(s) 111, 198
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 61, 222
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 3 cut(s) 12, 34, 77
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 58
NdeII GATC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 134
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 1 cut(s) 94
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 178
SetI ASST 1 cut(s) 178
SfaNI GCATC 1 cut(s) 200
SgeI CNNG 8 cut(s) 81, 92, 110, 131, 170, 197, 209, 219
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SpeI ACTAGT 1 cut(s) 68
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 178
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 118
TasI AATT 1 cut(s) 222
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 139
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.