Rw4G007580

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
16279281 .. 16279812
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007580.1

Sequence Viewer

Length: 243 bp
ATGGAGGCTCACAAAGAGAGGAGAGAGCAGATAGAGAAAGAGGAAAAGAAGAAAGCTACCACCACTGCTAGTTGCTGCCATGGAGGAGTTGCTGATCCGGTGGCAAAGGCGGTTATCCGAGAATCCATAATCAATGACAGCAGCGATGGTAAGGGTCGTGATGAAAAGGGTGGAGCTCAACACCCTGATGATGTTCTTGCTTTTTCCCGATGTGTTAACACAATTGACTCTTCACTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.68

Weight (kDa)

5.6

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19320
fragaria_vesca FvH4_4g06990
prunus_persica Prupe.1G073300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0214671
rosa_multiflora Rmu_sc0003033.1_g000070
rosa_roxburghii Rroxscaffold_5G00344070
rosa_rugosa Rorug04G0013900
rosa_samantha Rh4BG089800 Rh4DG084400
rosa_wichuraiana Rw4G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 89
AluBI AGCT 2 cut(s) 56, 176
AluI AGCT 2 cut(s) 56, 176
Alw21I GWGCWC 1 cut(s) 178
AlwI GGATC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 75, 141
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 62, 153
BccI CCATC 1 cut(s) 140
BfaI CTAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 76, 142
BlsI GCNGC 2 cut(s) 77, 143
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 34, 99
BseXI GCAGC 2 cut(s) 62, 153
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 79
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 62, 153
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
CviAII CATG 1 cut(s) 80
CviJI RGCY 3 cut(s) 8, 56, 176
CviKI_1 RGCY 3 cut(s) 8, 56, 176
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 83
FaiI YATR 2 cut(s) 81, 128
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 76, 142
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 76, 142
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 76, 142
HapII CCGG 1 cut(s) 98
Hin1II CATG 1 cut(s) 83
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 122, 227
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 158, 207
Hpy8I GTNNAC 1 cut(s) 217
Hsp92II CATG 1 cut(s) 83
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 2 cut(s) 111, 198
Lsp1109I GCAGC 2 cut(s) 62, 153
MaeI CTAG 1 cut(s) 69
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 61, 222
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 3 cut(s) 12, 34, 77
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 79
NdeII GATC 1 cut(s) 94
NlaIII CATG 1 cut(s) 83
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 77, 143
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 76, 142
Sau3AI GATC 1 cut(s) 94
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 178
SetI ASST 2 cut(s) 58, 178
SgeI CNNG 8 cut(s) 81, 92, 110, 131, 170, 197, 209, 219
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 178
StyI CCWWGG 1 cut(s) 79
TasI AATT 1 cut(s) 222
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 70
TseI GCWGC 2 cut(s) 75, 141
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 70
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.