Rmu_sc0003033.1_g000070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003033.1
OG0018328
Physical Location & Seq
Forward (+)
281184 .. 283167
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003033.1_g000070.1.cds

Sequence Viewer

Length: 330 bp
atgcaaggacaaggttgcacctatatagcatttccggcgtataaagcttttgaggctgtcgcggttgctttacataatgagacaaagatggaggctcataaagacagaagagagcagatggagaaagaggaaaagaagaatgctaccactactaccagtggcggccacggaggagttgacgatccggtggcgaaggcggtgattcgagaatgcataatcagtgacagcagccatgataagggtcatgatgaaaagggtggagctcaacaccccgatgatgttcttgctttttcccgttgtgttcacaaaattgactcttcacttgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.9

Weight (kDa)

5.77

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19320
fragaria_vesca FvH4_4g06990
prunus_persica Prupe.1G073300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0214671
rosa_multiflora Rmu_sc0003033.1_g000070
rosa_roxburghii Rroxscaffold_5G00344070
rosa_rugosa Rorug04G0013900
rosa_samantha Rh4BG089800 Rh4DG084400
rosa_wichuraiana Rw4G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AciI CCGC 3 cut(s) 62, 162, 197
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 326
AluBI AGCT 2 cut(s) 47, 263
AluI AGCT 2 cut(s) 47, 263
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 211
BanII GRGCYC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 240
BccI CCATC 2 cut(s) 82, 112
BcoDI GTCTC 1 cut(s) 74
BisI GCNGC 2 cut(s) 163, 229
BlsI GCNGC 2 cut(s) 164, 230
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 2 cut(s) 35, 185
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 74
BsmI GAATGC 2 cut(s) 145, 215
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 3 cut(s) 62, 162, 197
BspANI GGCC 1 cut(s) 165
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 244
BspPI GGATC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 103, 322
BstDSI CCRYGG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 35, 44, 53
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 163, 226
CciI TCATGA 1 cut(s) 244
CviAII CATG 2 cut(s) 233, 245
CviJI RGCY 6 cut(s) 47, 56, 95, 165, 231, 263
CviKI_1 RGCY 6 cut(s) 47, 56, 95, 165, 231, 263
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 103, 322
EarI CTCTTC 2 cut(s) 103, 322
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 265
FaeI CATG 2 cut(s) 236, 248
FaiI YATR 8 cut(s) 24, 26, 42, 75, 99, 215, 234, 246
FatI CATG 2 cut(s) 232, 244
Fnu4HI GCNGC 2 cut(s) 163, 229
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 163, 229
GluI GCNGC 2 cut(s) 163, 229
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 35, 185
Hin1II CATG 2 cut(s) 236, 248
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 2 cut(s) 202, 314
HpaII CCGG 2 cut(s) 35, 185
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 178, 304
Hpy188III TCNNGA 2 cut(s) 206, 245
Hpy8I GTNNAC 2 cut(s) 178, 304
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 4, 18, 213
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 44, 53
Hsp92II CATG 2 cut(s) 236, 248
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 3 cut(s) 48, 169, 198
Lsp1109I GCAGC 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 3 cut(s) 120, 148, 309
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 4 cut(s) 46, 85, 121, 164
Mph1103I ATGCAT 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 2 cut(s) 35, 185
Mva1269I GAATGC 2 cut(s) 145, 215
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 35, 44, 53
NdeII GATC 1 cut(s) 181
NlaIII CATG 2 cut(s) 236, 248
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 215
PagI TCATGA 1 cut(s) 244
PctI GAATGC 2 cut(s) 145, 215
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 2 cut(s) 164, 230
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 265
SatI GCNGC 2 cut(s) 163, 229
Sau3AI GATC 1 cut(s) 181
SchI GAGTC 1 cut(s) 308
SduI GDGCHC 1 cut(s) 265
SetI ASST 4 cut(s) 16, 23, 49, 265
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 1 cut(s) 309
SsiI CCGC 3 cut(s) 62, 162, 197
SstI GAGCTC 1 cut(s) 265
TaqI TCGA 1 cut(s) 205
TasI AATT 1 cut(s) 309
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 202
TscAI CASTG 2 cut(s) 163, 226
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 2 cut(s) 163, 226
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.