Rh4BG089800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018328
Physical Location & Seq
Forward (+)
15430015 .. 15430691
677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG089800.1

Sequence Viewer

Length: 318 bp
ATGGAGGCTCATAAAGAGAGAAGAGAGCAGATGGAGAAAGCGGAAAAGAAGAATGCTACCACTACTACCAGTGGCGGCCACGGAGGAGTTGACGATCCGGTGGCGAAGGCGGTGATTCGAGAATGCATAATCAGTGACAGCAGCCATGATAAGGGTCATGATGAAAAGGGTGGAGCTCAACACCCTGATGATGTTCTTGCTTTTTCCCGTTGTGTTCACAAAATTGACTCTTCACTTGAAAAAATCAATGATCAATTGTGTTTGACAGGTTTTTTTGTGCACCATGTTGCTTATCTATTTATAATTAGGTTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.67

Weight (kDa)

6.21

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19320
fragaria_vesca FvH4_4g06990
prunus_persica Prupe.1G073300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0214671
rosa_multiflora Rmu_sc0003033.1_g000070
rosa_roxburghii Rroxscaffold_5G00344070
rosa_rugosa Rorug04G0013900
rosa_samantha Rh4BG089800 Rh4DG084400
rosa_wichuraiana Rw4G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AciI CCGC 3 cut(s) 41, 75, 110
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 2 cut(s) 178, 282
Alw44I GTGCAC 1 cut(s) 278
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 76
ApaLI GTGCAC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 178, 282
BbvI GCAGC 1 cut(s) 153
BccI CCATC 1 cut(s) 25
BclI TGATCA 1 cut(s) 250
BisI GCNGC 2 cut(s) 76, 142
BlsI GCNGC 2 cut(s) 77, 143
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 178, 282
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 151
BsmI GAATGC 2 cut(s) 58, 128
BsnI GGCC 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 178, 282
Bsp143I GATC 2 cut(s) 94, 250
BspACI CCGC 3 cut(s) 41, 75, 110
BspANI GGCC 1 cut(s) 78
BspHI TCATGA 1 cut(s) 157
BspPI GGATC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 2 cut(s) 94, 250
Bst6I CTCTTC 2 cut(s) 16, 235
BstDSI CCRYGG 1 cut(s) 79
BstKTI GATC 2 cut(s) 97, 253
BstMBI GATC 2 cut(s) 94, 250
BstSLI GKGCMC 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 76, 139
CciI TCATGA 1 cut(s) 157
CviAII CATG 3 cut(s) 146, 158, 284
CviJI RGCY 4 cut(s) 8, 78, 144, 176
CviKI_1 RGCY 4 cut(s) 8, 78, 144, 176
DpnI GATC 2 cut(s) 96, 252
DpnII GATC 2 cut(s) 94, 250
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 16, 235
EarI CTCTTC 2 cut(s) 16, 235
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 3 cut(s) 149, 161, 287
FaiI YATR 7 cut(s) 12, 128, 147, 159, 285, 302, 316
FatI CATG 3 cut(s) 145, 157, 283
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 76, 142
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 76, 142
GluI GCNGC 2 cut(s) 76, 142
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 98
Hin1II CATG 3 cut(s) 149, 161, 287
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 115, 227
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 3 cut(s) 91, 217, 280
Hpy188III TCNNGA 2 cut(s) 119, 158
Hpy8I GTNNAC 3 cut(s) 91, 217, 280
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 126, 280
Hsp92II CATG 3 cut(s) 149, 161, 287
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 2 cut(s) 94, 250
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 4 cut(s) 82, 111, 198, 252
Lsp1109I GCAGC 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 96, 252
MboI GATC 2 cut(s) 94, 250
MboII GAAGA 3 cut(s) 33, 61, 222
MfeI CAATTG 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 178, 282
MluCI AATT 3 cut(s) 222, 254, 303
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 254
Mva1269I GAATGC 2 cut(s) 58, 128
NdeII GATC 2 cut(s) 94, 250
NlaIII CATG 3 cut(s) 149, 161, 287
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 128
PagI TCATGA 1 cut(s) 157
PctI GAATGC 2 cut(s) 58, 128
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 77, 143
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PsiI TTATAA 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 178
SatI GCNGC 2 cut(s) 76, 142
Sau3AI GATC 2 cut(s) 94, 250
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 2 cut(s) 178, 282
SetI ASST 3 cut(s) 178, 271, 311
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 3 cut(s) 222, 254, 303
SsiI CCGC 3 cut(s) 41, 75, 110
SstI GAGCTC 1 cut(s) 178
TaqI TCGA 1 cut(s) 118
TasI AATT 3 cut(s) 222, 254, 303
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 2 cut(s) 76, 139
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 2 cut(s) 76, 139
VneI GTGCAC 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.