Rroxscaffold_5G00344070

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
13993249 .. 13993461
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344070.1

Sequence Viewer

Length: 213 bp
ATGGAGAAAGAGGAAAAGAAGAAAGCTACCACCACTACTAGTTGCTGCCATGGAGGAGTTGCTGATCCGGTGGCAAAGGCGGTTATCCGAGAATCCATAATCAGTGACAGCAGCGATGGTAAGGGTCGTGATGAAAAGGGTGGAGCTCAACACCCTGATGATGTTCTTGCCTTTTCCCGATGTGTTAACACAATTGACTCTTCACTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.41

Weight (kDa)

5.29

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19320
fragaria_vesca FvH4_4g06990
prunus_persica Prupe.1G073300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0214671
rosa_multiflora Rmu_sc0003033.1_g000070
rosa_roxburghii Rroxscaffold_5G00344070
rosa_rugosa Rorug04G0013900
rosa_samantha Rh4BG089800 Rh4DG084400
rosa_wichuraiana Rw4G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 59
AhlI ACTAGT 1 cut(s) 38
AluBI AGCT 2 cut(s) 26, 146
AluI AGCT 2 cut(s) 26, 146
Alw21I GWGCWC 1 cut(s) 148
AlwI GGATC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 45, 111
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 32, 123
BccI CCATC 1 cut(s) 110
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 1 cut(s) 39
BisI GCNGC 2 cut(s) 46, 112
BlsI GCNGC 2 cut(s) 47, 113
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 32, 123
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 49
BspACI CCGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 205
BstDSI CCRYGG 1 cut(s) 49
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 32, 123
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 109
CviAII CATG 1 cut(s) 50
CviJI RGCY 2 cut(s) 26, 146
CviKI_1 RGCY 2 cut(s) 26, 146
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 51, 98
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 46, 112
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 46, 112
FspBI CTAG 1 cut(s) 39
GluI GCNGC 2 cut(s) 46, 112
HapII CCGG 1 cut(s) 68
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 92, 197
HpaI GTTAAC 1 cut(s) 187
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 128, 177
Hpy8I GTNNAC 1 cut(s) 187
Hsp92II CATG 1 cut(s) 53
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 2 cut(s) 81, 168
Lsp1109I GCAGC 2 cut(s) 32, 123
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 31, 192
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 1 cut(s) 192
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 2 cut(s) 4, 47
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 192
NcoI CCATGG 1 cut(s) 49
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 47, 113
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 46, 112
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 148
SetI ASST 2 cut(s) 28, 148
SgeI CNNG 8 cut(s) 51, 62, 80, 101, 140, 167, 179, 189
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 1 cut(s) 192
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 39
SstI GAGCTC 1 cut(s) 148
StyI CCWWGG 1 cut(s) 49
TasI AATT 1 cut(s) 192
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 2 cut(s) 45, 111
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 1 cut(s) 109
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.