FvH4_4g07310

fiber protein Fb15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017192
Physical Location & Seq
Reverse (-)
6695694 .. 6698469
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07310.t1

Sequence Viewer

Length: 270 bp
ATGGCGCAAAGGTTCTACAATCAGATCAAGGGTTTGAAGGTGACGGATTTGCCTAACCATGTGAAGCCGATGCTGTCCCTCGATTACATGAAGAAGACAGCGCAGAAGGGGTTGGACAACTACCACGCCAAGTACATTGAGACCAGCTCCATCGATCCTCTTCTTCACGTATGCTTCGGCGGCATGGTATTCTCTTACCTCGTCGTTCTACCCGAGGAGCGTCGCCATCTCGAGCACGCCCAGCACGCCAAAGAGCACGGCGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.26

Weight (kDa)

8.74

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30010
fragaria_vesca FvH4_4g07310
malus_domestica MD07G1027600.v1.1 MD13G1241900.v1.1
prunus_persica Prupe.1G075600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399651
rosa_laevigata RLG00000009248
rosa_multiflora Rmu_co8265177.1_g000001
rosa_roxburghii Rroxscaffold_5G00344580
rosa_rugosa Rorug04G0018000
rosa_samantha Rh4BG093300 Rh4DG088400
rosa_wichuraiana Rw4G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 180, 261
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 262
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 2 cut(s) 237, 258
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 2 cut(s) 212, 230
AoxI GGCC 1 cut(s) 262
AspLEI GCGC 2 cut(s) 7, 103
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 212, 230
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 2 cut(s) 237, 258
BccI CCATC 2 cut(s) 158, 234
BcoDI GTCTC 1 cut(s) 134
BisI GCNGC 2 cut(s) 181, 262
BlsI GCNGC 2 cut(s) 182, 263
BmeT110I CYCGRG 2 cut(s) 212, 230
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 101
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bsa29I ATCGAT 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 240
BshFI GGCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 237, 258
BsiHKCI CYCGRG 2 cut(s) 212, 230
BslFI GGGAC 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 1 cut(s) 264
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 2 cut(s) 212, 230
Bsp1286I GDGCHC 2 cut(s) 237, 258
Bsp143I GATC 2 cut(s) 24, 154
BspACI CCGC 2 cut(s) 180, 261
BspANI GGCC 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 153
BspPI GGATC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 24, 154
Bst6I CTCTTC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 237, 246
BstHHI GCGC 2 cut(s) 7, 103
BstKTI GATC 2 cut(s) 27, 157
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 24, 154
BstMWI GCNNNNNNNGC 3 cut(s) 180, 241, 245
BstV2I GAAGAC 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 237, 246
CfoI GCGC 2 cut(s) 7, 103
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 59, 88, 184
CviJI RGCY 3 cut(s) 67, 147, 264
CviKI_1 RGCY 3 cut(s) 67, 147, 264
CviQI GTAC 1 cut(s) 133
DpnI GATC 2 cut(s) 26, 156
DpnII GATC 2 cut(s) 24, 154
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 134
Eco88I CYCGRG 2 cut(s) 212, 230
FaeI CATG 3 cut(s) 62, 91, 187
FaiI YATR 4 cut(s) 60, 89, 172, 185
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 58, 87, 183
Fnu4HI GCNGC 2 cut(s) 181, 262
Fsp4HI GCNGC 2 cut(s) 181, 262
GlaI GCGC 2 cut(s) 6, 102
GluI GCNGC 2 cut(s) 181, 262
GsaI CCCAGC 1 cut(s) 244
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 1 cut(s) 209
HhaI GCGC 2 cut(s) 7, 103
Hin1II CATG 3 cut(s) 62, 91, 187
Hin6I GCGC 2 cut(s) 5, 101
HinP1I GCGC 2 cut(s) 5, 101
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 230
Hpy99I CGWCG 2 cut(s) 206, 225
HpyAV CCTTC 2 cut(s) 31, 100
HpyCH4IV ACGT 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 241, 245
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 62, 91, 187
HspAI GCGC 2 cut(s) 5, 101
Kzo9I GATC 2 cut(s) 24, 154
LmnI GCTCC 2 cut(s) 152, 217
LpnPI CCDG 2 cut(s) 157, 254
LweI GCATC 1 cut(s) 60
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 26, 156
MboI GATC 2 cut(s) 24, 154
MboII GAAGA 4 cut(s) 103, 106, 152, 155
MhlI GDGCHC 2 cut(s) 237, 258
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 4 cut(s) 89, 168, 208, 209
MseI TTAA 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 180, 241, 245
NdeII GATC 2 cut(s) 24, 154
NlaIII CATG 3 cut(s) 62, 91, 187
NmuCI GTSAC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PkrI GCNGC 2 cut(s) 182, 263
Ppu21I YACGTR 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 240
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 2 cut(s) 181, 262
Sau3AI GATC 2 cut(s) 24, 154
SduI GDGCHC 2 cut(s) 237, 258
SetI ASST 5 cut(s) 14, 42, 149, 171, 201
SfaNI GCATC 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SsiI CCGC 2 cut(s) 180, 261
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 81, 153, 231
TatI WGTACW 1 cut(s) 132
TauI GCSGC 2 cut(s) 183, 264
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 59
XhoI CTCGAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.