RLG00000009248

fiber protein Fb15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017192
Physical Location & Seq
Forward (+)
49733538 .. 49734037
500 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009248

Sequence Viewer

Length: 345 bp
ATGCGCTTGTTTTTGGAAGCAAGAGAAATCATAGCACTGATCCGCATCGATGTGGCCCAATTAGTTTTGGCAAAAATGGCAAAGAGGTTCTACAACGAGATCAAGGGGCTGAAGGTGACGGAGGTGCCTAACCACGTGAAGCCGATGCTGTCCCTGGATTACGTGAAGAAGACCTTGCAGAAGGGTTTGGACAACTACCACGCCAAGTACATCCAGACCAGCTCCATCGATCCTCTTCTCCATGTCTGCTTCGGCGGCATGGTCTTCTCTTACCTCGTCGCTCTTCCCGAGGAGCGTCGCCACCTCGAGCACGCCCAGCACGCCAAGGAACACGGCGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.12

Weight (kDa)

9.27

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30010
fragaria_vesca FvH4_4g07310
malus_domestica MD07G1027600.v1.1 MD13G1241900.v1.1
prunus_persica Prupe.1G075600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399651
rosa_laevigata RLG00000009248
rosa_multiflora Rmu_co8265177.1_g000001
rosa_roxburghii Rroxscaffold_5G00344580
rosa_rugosa Rorug04G0018000
rosa_samantha Rh4BG093300 Rh4DG088400
rosa_wichuraiana Rw4G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AciI CCGC 3 cut(s) 43, 255, 336
AclWI GGATC 2 cut(s) 34, 224
AcoI YGGCCR 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 131
AcvI CACGTG 1 cut(s) 136
AfaI GTAC 1 cut(s) 209
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 2 cut(s) 34, 224
Ama87I CYCGRG 2 cut(s) 287, 305
AoxI GGCC 2 cut(s) 54, 337
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 2 cut(s) 287, 305
BanI GGYRCC 1 cut(s) 124
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 176, 256
Bbv12I GWGCWC 1 cut(s) 312
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 155
BisI GCNGC 2 cut(s) 256, 337
BlsI GCNGC 2 cut(s) 257, 338
Bme1390I CCNGG 1 cut(s) 155
BmeT110I CYCGRG 2 cut(s) 287, 305
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 2 cut(s) 54, 135
BpiI GAAGAC 2 cut(s) 176, 256
Bsa29I ATCGAT 2 cut(s) 48, 228
BsaAI YACGTR 2 cut(s) 136, 163
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 153, 288, 324
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 155
BseCI ATCGAT 2 cut(s) 48, 228
BseDI CCNNGG 3 cut(s) 153, 288, 324
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 305
BseYI CCCAGC 1 cut(s) 315
BshFI GGCC 2 cut(s) 56, 339
BshNI GGYRCC 1 cut(s) 124
BshVI ATCGAT 2 cut(s) 48, 228
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 287, 305
BslFI GGGAC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 2 cut(s) 56, 339
BsoBI CYCGRG 2 cut(s) 287, 305
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 39, 99, 229
BspACI CCGC 3 cut(s) 43, 255, 336
BspANI GGCC 2 cut(s) 56, 339
BspDI ATCGAT 2 cut(s) 48, 228
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 2 cut(s) 34, 224
BspQI GCTCTTC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 153, 288, 324
BssMI GATC 3 cut(s) 39, 99, 229
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 155
Bst6I CTCTTC 2 cut(s) 240, 288
BstBAI YACGTR 2 cut(s) 136, 163
BstC8I GCNNGC 2 cut(s) 312, 321
BstF5I GGATG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 42, 102, 232
BstMBI GATC 3 cut(s) 39, 99, 229
BstMWI GCNNNNNNNGC 4 cut(s) 77, 255, 316, 320
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstV2I GAAGAC 2 cut(s) 176, 256
Bsu15I ATCGAT 2 cut(s) 48, 228
BsuRI GGCC 2 cut(s) 56, 339
BsuTUI ATCGAT 2 cut(s) 48, 228
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 2 cut(s) 312, 321
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 55
ClaI ATCGAT 2 cut(s) 48, 228
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 242, 259
CviJI RGCY 5 cut(s) 56, 109, 142, 222, 339
CviKI_1 RGCY 5 cut(s) 56, 109, 142, 222, 339
CviQI GTAC 1 cut(s) 208
DpnI GATC 3 cut(s) 41, 101, 231
DpnII GATC 3 cut(s) 39, 99, 229
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 240, 288
EarI CTCTTC 2 cut(s) 240, 288
Eco130I CCWWGG 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 131
Eco72I CACGTG 1 cut(s) 136
Eco88I CYCGRG 2 cut(s) 287, 305
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 2 cut(s) 245, 262
FaiI YATR 3 cut(s) 32, 243, 260
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 1 cut(s) 136
FatI CATG 2 cut(s) 241, 258
Fnu4HI GCNGC 2 cut(s) 256, 337
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 256, 337
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 256, 337
GsaI CCCAGC 1 cut(s) 319
HaeIII GGCC 2 cut(s) 56, 339
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 245, 262
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HphI GGTGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 214, 287
Hpy99I CGWCG 2 cut(s) 281, 300
HpyAV CCTTC 2 cut(s) 106, 175
HpyCH4IV ACGT 2 cut(s) 135, 162
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 255, 316, 320
HpySE526I ACGT 2 cut(s) 135, 162
Hsp92II CATG 2 cut(s) 245, 262
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 39, 99, 229
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 2 cut(s) 227, 292
LpnPI CCDG 5 cut(s) 140, 167, 227, 232, 329
LweI GCATC 2 cut(s) 54, 135
MaeII ACGT 2 cut(s) 135, 162
MaeIII GTNAC 1 cut(s) 115
MalI GATC 3 cut(s) 41, 101, 231
MboI GATC 3 cut(s) 39, 99, 229
MboII GAAGA 5 cut(s) 178, 181, 227, 256, 275
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 59
MnlI CCTC 6 cut(s) 78, 115, 243, 283, 284, 314
MseI TTAA 1 cut(s) 343
MslI CAYNNNNRTG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 77, 255, 316, 320
NdeII GATC 3 cut(s) 39, 99, 229
NlaIII CATG 2 cut(s) 245, 262
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 115
PaeR7I CTCGAG 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PkrI GCNGC 2 cut(s) 257, 338
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
Ppu21I YACGTR 2 cut(s) 136, 163
Psp6I CCWGG 1 cut(s) 153
PspCI CACGTG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 305
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 343
SatI GCNGC 2 cut(s) 256, 337
Sau3AI GATC 3 cut(s) 39, 99, 229
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 312
SetI ASST 9 cut(s) 89, 117, 126, 138, 165, 176, 224, 276, 306
SfaNI GCATC 2 cut(s) 54, 135
Sfr274I CTCGAG 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 59
SsiI CCGC 3 cut(s) 43, 255, 336
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 324
TaiI ACGT 2 cut(s) 138, 165
TaqI TCGA 3 cut(s) 48, 228, 306
TasI AATT 1 cut(s) 59
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 258, 339
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.