Rh4BG093300

fiber protein Fb15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017192
Physical Location & Seq
Reverse (-)
15954454 .. 15958163
3710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG093300.1

Sequence Viewer

Length: 411 bp
ATGCAGCCGAACCCAAAGAAAAGGTCATACAAAACTCTCTGGTTCACCGGCTCCGTCTCACACATCGCCAAATCCCTCACCTCCTCTCAAATCTGGTCATCATTTTCTAGGGTTAGGGTTTCCGATTTCTCTGGGCAAAAAATGGCAAAGAGGTTCTACAACGAGATCAAGGGGCTGAAGGTGACGGAGGTGCCTAACCACGTGAAGCCGATGCTGTCCCTCGATTACGTGAAGAAGACATTGCAGAAGGGCTTGGACAACTACAACGCCAAGTACATCCAGACCAGCTCCATCGATCCTCTTCTCCATGTCTGCTTCGGCGGCATGATCTTCTCTTACCTCGTCGCTCTTCCCGAGGAGCGTCGCCACCTCGAGCACGCCCAGCACGCCAAGGAACACGGCGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.59

Weight (kDa)

9.83

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30010
fragaria_vesca FvH4_4g07310
malus_domestica MD07G1027600.v1.1 MD13G1241900.v1.1
prunus_persica Prupe.1G075600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399651
rosa_laevigata RLG00000009248
rosa_multiflora Rmu_co8265177.1_g000001
rosa_roxburghii Rroxscaffold_5G00344580
rosa_rugosa Rorug04G0018000
rosa_samantha Rh4BG093300 Rh4DG088400
rosa_wichuraiana Rw4G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 2 cut(s) 321, 402
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 197
AcvI CACGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 275
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 2 cut(s) 353, 371
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AsuHPI GGTGA 3 cut(s) 37, 70, 193
AvaI CYCGRG 2 cut(s) 353, 371
BanI GGYRCC 1 cut(s) 190
BbrPI CACGTG 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 108
BisI GCNGC 3 cut(s) 5, 322, 403
BlsI GCNGC 3 cut(s) 6, 323, 404
BmeT110I CYCGRG 2 cut(s) 353, 371
BmiI GGNNCC 2 cut(s) 52, 192
BmsI GCATC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 294
BsaAI YACGTR 2 cut(s) 202, 229
BsaJI CCNNGG 2 cut(s) 354, 390
Bse118I RCCGGY 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 354, 390
BseGI GGATG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 239
BseRI GAGGAG 2 cut(s) 73, 371
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 381
BshFI GGCC 1 cut(s) 405
BshNI GGYRCC 1 cut(s) 190
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 353, 371
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 405
BsoBI CYCGRG 2 cut(s) 353, 371
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 3 cut(s) 165, 295, 327
BspACI CCGC 2 cut(s) 321, 402
BspANI GGCC 1 cut(s) 405
BspDI ATCGAT 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 52, 192
BspPI GGATC 1 cut(s) 290
BspQI GCTCTTC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 354, 390
BssMI GATC 3 cut(s) 165, 295, 327
BssT1I CCWWGG 1 cut(s) 390
Bst6I CTCTTC 2 cut(s) 306, 354
BstBAI YACGTR 2 cut(s) 202, 229
BstC8I GCNNGC 2 cut(s) 378, 387
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 3 cut(s) 168, 298, 330
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 165, 295, 327
BstMWI GCNNNNNNNGC 3 cut(s) 321, 382, 386
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 1 cut(s) 405
BsuTUI ATCGAT 1 cut(s) 294
BtgZI GCGATG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 2 cut(s) 378, 387
Cfr10I RCCGGY 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 294
CseI GACGC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 308, 325
CviJI RGCY 7 cut(s) 7, 51, 175, 208, 252, 288, 405
CviKI_1 RGCY 7 cut(s) 7, 51, 175, 208, 252, 288, 405
CviQI GTAC 1 cut(s) 274
DpnI GATC 3 cut(s) 167, 297, 329
DpnII GATC 3 cut(s) 165, 295, 327
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 2 cut(s) 306, 354
EarI CTCTTC 2 cut(s) 306, 354
Eco130I CCWWGG 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 197
Eco72I CACGTG 1 cut(s) 202
Eco88I CYCGRG 2 cut(s) 353, 371
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 2 cut(s) 311, 328
FaiI YATR 3 cut(s) 28, 309, 326
FaqI GGGAC 1 cut(s) 202
FatI CATG 2 cut(s) 307, 324
Fnu4HI GCNGC 3 cut(s) 5, 322, 403
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 5, 322, 403
FspBI CTAG 1 cut(s) 108
GluI GCNGC 3 cut(s) 5, 322, 403
GsaI CCCAGC 1 cut(s) 385
HaeIII GGCC 1 cut(s) 405
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 350
Hin1II CATG 2 cut(s) 311, 328
HpaII CCGG 1 cut(s) 48
HphI GGTGA 3 cut(s) 37, 70, 193
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 280, 353
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 347, 366
HpyAV CCTTC 2 cut(s) 172, 241
HpyCH4IV ACGT 2 cut(s) 201, 228
HpyCH4V TGCA 2 cut(s) 4, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 321, 382, 386
HpySE526I ACGT 2 cut(s) 201, 228
Hsp92II CATG 2 cut(s) 311, 328
Kzo9I GATC 3 cut(s) 165, 295, 327
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 3 cut(s) 56, 293, 358
LpnPI CCDG 7 cut(s) 25, 61, 79, 117, 293, 298, 395
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 108
MaeII ACGT 2 cut(s) 201, 228
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 167, 297, 329
MboI GATC 3 cut(s) 165, 295, 327
MboII GAAGA 5 cut(s) 244, 247, 293, 322, 341
MhlI GDGCHC 1 cut(s) 378
MseI TTAA 1 cut(s) 409
MspI CCGG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 321, 382, 386
NdeII GATC 3 cut(s) 165, 295, 327
NlaIII CATG 2 cut(s) 311, 328
NlaIV GGNNCC 2 cut(s) 52, 192
NmuCI GTSAC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PkrI GCNGC 3 cut(s) 6, 323, 404
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
Ppu21I YACGTR 2 cut(s) 202, 229
PspCI CACGTG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 52, 192
PspXI VCTCGAGB 1 cut(s) 371
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 3 cut(s) 5, 322, 403
Sau3AI GATC 3 cut(s) 165, 295, 327
SduI GDGCHC 1 cut(s) 378
SfaNI GCATC 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SsiI CCGC 2 cut(s) 321, 402
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 390
TaiI ACGT 2 cut(s) 204, 231
TaqI TCGA 3 cut(s) 222, 294, 372
TatI WGTACW 1 cut(s) 273
TauI GCSGC 2 cut(s) 324, 405
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 181
TspGWI ACGGA 2 cut(s) 43, 200
XhoI CTCGAG 1 cut(s) 371
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.