Rorug04G0018000

fiber protein Fb15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017192
Physical Location & Seq
Reverse (-)
2664464 .. 2665014
551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0018000.1

Sequence Viewer

Length: 453 bp
ATGACAAAGCCGGCAAGATTTCCCCCAAAGTTTCTCTCCCTCCCTAAACCCATAGGATTATGGGGTATCTCAGATTTTGATAAAGGTATTATTGTTGGTATCATTGATTCCGGTGTGTGGCCAGAACACCCTAGTTTTAAAGACCACGATATGCCCAAAATACCAAGTAAACGGAAAGGATCATATGACAAAGCCGGGCAAGATTTCAATTCCTCACTTTGCAATTTCAAGCTTATTGGAGCTAAATACTTCAACAAACATAATGTATCTCATTTTGGCTATGGTGGTGGAACATCCAGTGGTATTGCAACAAGAGCCATGGTAGCAGTGTACAAGGTGATTTGGGACAATTATAACACTTATATATCAGATATTGTTGCAGCTATAGATGAAGCCATTGCTGACAGTGTTGATGTTATGAATTTCTCTATTCATGATGAATATAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.65

Weight (kDa)

7.83

Isoelectric Point (pI)

20.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 27 - 144 3.1e-09 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30010
fragaria_vesca FvH4_4g07310
malus_domestica MD07G1027600.v1.1 MD13G1241900.v1.1
prunus_persica Prupe.1G075600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399651
rosa_laevigata RLG00000009248
rosa_multiflora Rmu_co8265177.1_g000001
rosa_roxburghii Rroxscaffold_5G00344580
rosa_rugosa Rorug04G0018000
rosa_samantha Rh4BG093300 Rh4DG088400
rosa_wichuraiana Rw4G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 1 cut(s) 421
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 3 cut(s) 208, 229, 253
AluBI AGCT 3 cut(s) 232, 242, 383
AluI AGCT 3 cut(s) 232, 242, 383
AlwI GGATC 1 cut(s) 187
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 421
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 349
BalI TGGCCA 1 cut(s) 121
BbvI GCAGC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 384
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 392
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 3 cut(s) 11, 111, 195
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 1 cut(s) 179
Bsp19I CCATGG 1 cut(s) 318
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 433
BspPI GGATC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 1 cut(s) 182
BstMBI GATC 1 cut(s) 179
BstMWI GCNNNNNNNGC 2 cut(s) 314, 323
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 392
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 1 cut(s) 293
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 304, 333, 412
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 10
Csp6I GTAC 1 cut(s) 331
CviAII CATG 2 cut(s) 319, 434
CviJI RGCY 9 cut(s) 10, 121, 194, 232, 242, 279, 317, 383, 395
CviKI_1 RGCY 9 cut(s) 10, 121, 194, 232, 242, 279, 317, 383, 395
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 2 cut(s) 322, 437
FaqI GGGAC 1 cut(s) 359
FatI CATG 2 cut(s) 318, 433
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 132
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 121
HapII CCGG 3 cut(s) 11, 111, 195
Hin1II CATG 2 cut(s) 322, 437
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 107
HpaII CCGG 3 cut(s) 11, 111, 195
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 170, 331
Hpy188I TCNGA 2 cut(s) 73, 370
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 2 cut(s) 170, 331
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 3 cut(s) 222, 308, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 323
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 2 cut(s) 322, 437
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 5 cut(s) 24, 124, 135, 208, 310
Lsp1109I GCAGC 1 cut(s) 392
MaeI CTAG 1 cut(s) 132
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 4 cut(s) 208, 223, 349, 421
MluNI TGGCCA 1 cut(s) 121
MnlI CCTC 2 cut(s) 50, 223
Mox20I TGGCCA 1 cut(s) 121
MroNI GCCGGC 1 cut(s) 10
MscI TGGCCA 1 cut(s) 121
MseI TTAA 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 121
MspI CCGG 3 cut(s) 11, 111, 195
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 314, 323
NaeI GCCGGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 184
NdeII GATC 1 cut(s) 179
NgoMIV GCCGGC 1 cut(s) 10
NlaIII CATG 2 cut(s) 322, 437
PagI TCATGA 1 cut(s) 433
PdiI GCCGGC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 382
PsiI TTATAA 1 cut(s) 354
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 196
SetI ASST 5 cut(s) 88, 234, 244, 339, 385
SfcI CTRYAG 1 cut(s) 384
Sse9I AATT 4 cut(s) 208, 223, 349, 421
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 407
TasI AATT 4 cut(s) 208, 223, 349, 421
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 3 cut(s) 304, 333, 412
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 4 cut(s) 405, 422, 434, 453
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 3 cut(s) 304, 333, 412
XapI RAATTY 1 cut(s) 421
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.