Prupe.1G075600_v2.0.a1

fiber protein Fb15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017192
Physical Location & Seq
Reverse (-)
5416195 .. 5419082
2888 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G075600.1

Sequence Viewer

Length: 270 bp
ATGGCGTTGAGGAGATTCTACAACGAGATCAAGGGGTTGAAGGTGAAGGAATTGCCCAGCTATGTGAAGCCGATGCTGTCCGTCGACTACGCGAAGAAGACGGTGCAGAGAGGCTTGGACAATTACCACGCCAAGTACATCCAGACCAACTCCGTCGATCCTCTCTTCCATGTCTGCTTCGGGGGCATGATCTTTTCCTACCTCGTCGCTCTTCCTGAGGAGCGTCGCCACCTCGAGCACCAGCAGCACGCCAAGGAGCATGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.45

Weight (kDa)

9.3

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30010
fragaria_vesca FvH4_4g07310
malus_domestica MD07G1027600.v1.1 MD13G1241900.v1.1
prunus_persica Prupe.1G075600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399651
rosa_laevigata RLG00000009248
rosa_multiflora Rmu_co8265177.1_g000001
rosa_roxburghii Rroxscaffold_5G00344580
rosa_rugosa Rorug04G0018000
rosa_samantha Rh4BG093300 Rh4DG088400
rosa_wichuraiana Rw4G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 92
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 262
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 240
AlwI GGATC 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 233
AxyI CCTNAGG 1 cut(s) 216
BalI TGGCCA 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 233
BmsI GCATC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 252
Bse21I CCTNAGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 25, 233
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 233
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 3 cut(s) 27, 157, 189
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 92
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 27, 157, 189
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 2 cut(s) 170, 216
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 3 cut(s) 30, 160, 192
BstMBI GATC 3 cut(s) 27, 157, 189
BstMWI GCNNNNNNNGC 2 cut(s) 183, 244
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 104
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 249
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 136
CviAII CATG 3 cut(s) 170, 187, 260
CviJI RGCY 4 cut(s) 60, 70, 114, 264
CviKI_1 RGCY 4 cut(s) 60, 70, 114, 264
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 216
DpnI GATC 3 cut(s) 29, 159, 191
DpnII GATC 3 cut(s) 27, 157, 189
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 170, 216
EarI CTCTTC 2 cut(s) 170, 216
Eco130I CCWWGG 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 173, 190, 263
FaiI YATR 4 cut(s) 63, 171, 188, 261
FatI CATG 3 cut(s) 169, 186, 259
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 245
GsaI CCCAGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 1 cut(s) 212
Hin1II CATG 3 cut(s) 173, 190, 263
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 1 cut(s) 15
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 142, 215
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 4 cut(s) 86, 158, 209, 228
HpyAV CCTTC 2 cut(s) 34, 40
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 244
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 3 cut(s) 173, 190, 263
Kzo9I GATC 3 cut(s) 27, 157, 189
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 220, 256
LpnPI CCDG 4 cut(s) 70, 155, 228, 254
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 63
MalI GATC 3 cut(s) 29, 159, 191
MboI GATC 3 cut(s) 27, 157, 189
MboII GAAGA 4 cut(s) 106, 109, 157, 203
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 2 cut(s) 50, 121
MluNI TGGCCA 1 cut(s) 264
MnlI CCTC 6 cut(s) 3, 104, 171, 211, 212, 242
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 264
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 183, 244
NdeII GATC 3 cut(s) 27, 157, 189
NlaIII CATG 3 cut(s) 173, 190, 263
PaeR7I CTCGAG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 56
PspXI VCTCGAGB 1 cut(s) 233
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 216
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 3 cut(s) 27, 157, 189
SduI GDGCHC 1 cut(s) 240
SetI ASST 4 cut(s) 45, 62, 204, 234
SfaNI GCATC 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 2 cut(s) 50, 121
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 3 cut(s) 84, 156, 234
TasI AATT 2 cut(s) 50, 121
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 15
TseI GCWGC 1 cut(s) 244
TspGWI ACGGA 2 cut(s) 70, 142
XhoI CTCGAG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.