MD13G1241900.v1.1

fiber protein Fb15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017192
Physical Location & Seq
Reverse (-)
25160441 .. 25163050
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1241900.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGCGATGAGGAGATTCTACAACGAGATCAAGGGGTTGAAGGTGAAGGAATTGCCCGACCATATTAAGCCGATGCTGTCCGTCGATTCCGCCAAGAAGGCTGTGCAGAGAGGCTTGGACAACTACCACGCCAAGTACATCCAGACCAGCTCCGTCGATCCTCTCCTCCATGTCTGCTTCGGAGGCATGATCTTCTCCTACCTCGTCGCTCTTCCCGAGGAGCGCCGCCACCTCGAGCACGCCAAGCACGCCAAGGAGCATGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.26

Weight (kDa)

9.34

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30010
fragaria_vesca FvH4_4g07310
malus_domestica MD07G1027600.v1.1 MD13G1241900.v1.1
prunus_persica Prupe.1G075600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399651
rosa_laevigata RLG00000009248
rosa_multiflora Rmu_co8265177.1_g000001
rosa_roxburghii Rroxscaffold_5G00344580
rosa_rugosa Rorug04G0018000
rosa_samantha Rh4BG093300 Rh4DG088400
rosa_wichuraiana Rw4G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 90, 226
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 262
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 240
AlwI GGATC 1 cut(s) 152
Ama87I CYCGRG 2 cut(s) 215, 233
AoxI GGCC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 55
AvaI CYCGRG 2 cut(s) 215, 233
BalI TGGCCA 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
BmeT110I CYCGRG 2 cut(s) 215, 233
BmsI GCATC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 216, 252
BseDI CCNNGG 2 cut(s) 216, 252
BseGI GGATG 1 cut(s) 138
BseRI GAGGAG 3 cut(s) 25, 155, 233
BsgI GTGCAG 1 cut(s) 125
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 2 cut(s) 215, 233
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 2 cut(s) 215, 233
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 3 cut(s) 27, 157, 189
BspACI CCGC 2 cut(s) 90, 226
BspANI GGCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 216
BssECI CCNNGG 2 cut(s) 216, 252
BssMI GATC 3 cut(s) 27, 157, 189
BssT1I CCWWGG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 240, 249
BstF5I GGATG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 30, 160, 192
BstMBI GATC 3 cut(s) 27, 157, 189
BstMWI GCNNNNNNNGC 4 cut(s) 98, 183, 244, 248
BsuRI GGCC 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 240, 249
CfoI GCGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 136
CviAII CATG 3 cut(s) 170, 187, 260
CviJI RGCY 5 cut(s) 70, 101, 114, 150, 264
CviKI_1 RGCY 5 cut(s) 70, 101, 114, 150, 264
CviQI GTAC 1 cut(s) 136
DpnI GATC 3 cut(s) 29, 159, 191
DpnII GATC 3 cut(s) 27, 157, 189
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 252
Eco88I CYCGRG 2 cut(s) 215, 233
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 173, 190, 263
FaiI YATR 4 cut(s) 63, 171, 188, 261
FatI CATG 3 cut(s) 169, 186, 259
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 226
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 1 cut(s) 264
HhaI GCGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 173, 190, 263
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 2 cut(s) 15, 86
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 142, 215
Hpy99I CGWCG 3 cut(s) 86, 158, 209
HpyAV CCTTC 3 cut(s) 34, 40, 91
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 183, 244, 248
Hsp92II CATG 3 cut(s) 173, 190, 263
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 27, 157, 189
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 155, 220, 256
LpnPI CCDG 2 cut(s) 155, 160
LweI GCATC 1 cut(s) 63
MalI GATC 3 cut(s) 29, 159, 191
MboI GATC 3 cut(s) 27, 157, 189
MboII GAAGA 2 cut(s) 184, 203
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 264
MnlI CCTC 8 cut(s) 3, 104, 171, 176, 176, 211, 212, 242
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MseI TTAA 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 98, 183, 244, 248
NdeII GATC 3 cut(s) 27, 157, 189
NlaIII CATG 3 cut(s) 173, 190, 263
PaeR7I CTCGAG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 2 cut(s) 15, 86
PkrI GCNGC 1 cut(s) 227
PspXI VCTCGAGB 1 cut(s) 233
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 3 cut(s) 27, 157, 189
SduI GDGCHC 1 cut(s) 240
SetI ASST 4 cut(s) 45, 152, 204, 234
SfaNI GCATC 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 50
SsiI CCGC 2 cut(s) 90, 226
StyI CCWWGG 1 cut(s) 252
TaqI TCGA 3 cut(s) 84, 156, 234
TasI AATT 1 cut(s) 50
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 2 cut(s) 15, 86
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TspGWI ACGGA 2 cut(s) 70, 142
XhoI CTCGAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.