Rmu_co8265177.1_g000001

fiber protein Fb15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8265177.1
OG0017192
Physical Location & Seq
Reverse (-)
396 .. 665
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8265177.1_g000001.1.cds

Sequence Viewer

Length: 270 bp
atggcaaagaggttctacaacgagatcaaggggctgaaggtgacggaggtgcccagccacgtgaagccgatgctgtccctcgattacgtgaagaagacattgcagaagggtttggacaactacaacgccaagtacatccagaccagctccatcgatcctcttctccatgtctgcttcggcggcatgatcttctcttacctcgtcgctcttcccgaggagcgtcgccacctcgagcacgcccagcacgccaaggaacacggcggccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.2

Weight (kDa)

9.07

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30010
fragaria_vesca FvH4_4g07310
malus_domestica MD07G1027600.v1.1 MD13G1241900.v1.1
prunus_persica Prupe.1G075600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399651
rosa_laevigata RLG00000009248
rosa_multiflora Rmu_co8265177.1_g000001
rosa_roxburghii Rroxscaffold_5G00344580
rosa_rugosa Rorug04G0018000
rosa_samantha Rh4BG093300 Rh4DG088400
rosa_wichuraiana Rw4G007890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AciI CCGC 2 cut(s) 180, 261
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 56
AcvI CACGTG 1 cut(s) 61
AfaI GTAC 1 cut(s) 134
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 237
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 2 cut(s) 212, 230
AoxI GGCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 212, 230
BaeGI GKGCMC 1 cut(s) 54
BanI GGYRCC 1 cut(s) 49
BbrPI CACGTG 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 1 cut(s) 158
BisI GCNGC 2 cut(s) 181, 262
BlsI GCNGC 2 cut(s) 182, 263
BmeT110I CYCGRG 2 cut(s) 212, 230
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 153
BsaAI YACGTR 2 cut(s) 61, 88
BsaJI CCNNGG 2 cut(s) 213, 249
Bse3DI GCAATG 1 cut(s) 98
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 213, 249
BseGI GGATG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 54
BseYI CCCAGC 2 cut(s) 53, 240
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 49
BshVI ATCGAT 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 212, 230
BslFI GGGAC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 2 cut(s) 212, 230
Bsp1286I GDGCHC 2 cut(s) 54, 237
Bsp143I GATC 3 cut(s) 24, 154, 186
BspACI CCGC 2 cut(s) 180, 261
BspANI GGCC 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 213, 249
BssMI GATC 3 cut(s) 24, 154, 186
BssT1I CCWWGG 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 165, 213
BstBAI YACGTR 2 cut(s) 61, 88
BstC8I GCNNGC 2 cut(s) 237, 246
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 3 cut(s) 27, 157, 189
BstMBI GATC 3 cut(s) 24, 154, 186
BstMWI GCNNNNNNNGC 3 cut(s) 180, 241, 245
BstSLI GKGCMC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 153
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 237, 246
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 167, 184
CviJI RGCY 5 cut(s) 34, 57, 67, 147, 264
CviKI_1 RGCY 5 cut(s) 34, 57, 67, 147, 264
CviQI GTAC 1 cut(s) 133
DpnI GATC 3 cut(s) 26, 156, 188
DpnII GATC 3 cut(s) 24, 154, 186
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 165, 213
EarI CTCTTC 2 cut(s) 165, 213
Eco130I CCWWGG 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 56
Eco72I CACGTG 1 cut(s) 61
Eco88I CYCGRG 2 cut(s) 212, 230
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 2 cut(s) 170, 187
FaiI YATR 2 cut(s) 168, 185
FaqI GGGAC 1 cut(s) 61
FatI CATG 2 cut(s) 166, 183
Fnu4HI GCNGC 2 cut(s) 181, 262
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 181, 262
GluI GCNGC 2 cut(s) 181, 262
GsaI CCCAGC 2 cut(s) 57, 244
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 1 cut(s) 209
Hin1II CATG 2 cut(s) 170, 187
HphI GGTGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 139, 212
Hpy99I CGWCG 2 cut(s) 206, 225
HpyAV CCTTC 2 cut(s) 31, 100
HpyCH4IV ACGT 2 cut(s) 60, 87
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 241, 245
HpySE526I ACGT 2 cut(s) 60, 87
Hsp92II CATG 2 cut(s) 170, 187
Kzo9I GATC 3 cut(s) 24, 154, 186
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 2 cut(s) 152, 217
LpnPI CCDG 4 cut(s) 67, 152, 157, 254
LweI GCATC 1 cut(s) 60
MaeII ACGT 2 cut(s) 60, 87
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 26, 156, 188
MboI GATC 3 cut(s) 24, 154, 186
MboII GAAGA 5 cut(s) 103, 106, 152, 181, 200
MhlI GDGCHC 2 cut(s) 54, 237
MnlI CCTC 7 cut(s) 3, 40, 89, 168, 208, 209, 239
MseI TTAA 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 180, 241, 245
NdeII GATC 3 cut(s) 24, 154, 186
NlaIII CATG 2 cut(s) 170, 187
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PkrI GCNGC 2 cut(s) 182, 263
PmaCI CACGTG 1 cut(s) 61
PmlI CACGTG 1 cut(s) 61
Ppu21I YACGTR 2 cut(s) 61, 88
PspCI CACGTG 1 cut(s) 61
PspFI CCCAGC 2 cut(s) 53, 240
PspN4I GGNNCC 1 cut(s) 51
PspXI VCTCGAGB 1 cut(s) 230
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 2 cut(s) 181, 262
Sau3AI GATC 3 cut(s) 24, 154, 186
SduI GDGCHC 2 cut(s) 54, 237
SetI ASST 8 cut(s) 14, 42, 51, 63, 90, 149, 201, 231
SfaNI GCATC 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SsiI CCGC 2 cut(s) 180, 261
StyI CCWWGG 1 cut(s) 249
TaiI ACGT 2 cut(s) 63, 90
TaqI TCGA 3 cut(s) 81, 153, 231
TatI WGTACW 1 cut(s) 132
TauI GCSGC 2 cut(s) 183, 264
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 59
XhoI CTCGAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.