FvH4_4g07691

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012970
Physical Location & Seq
Forward (+)
7135405 .. 7136527
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07691.t1

Sequence Viewer

Length: 582 bp
ATGGAGAGGCTCCGTTTACAGACCTCTTCCGTCATCTTGTGGTTGCGCATTGCTTCGATCCTCATCGTTTTGGTCATTTACGGCAACTCCGACGCTCCGATCGGTTCCTCAGATTCCAAATCGGACCTTCCTGTCTCCATTGCGATTCTGATGGTTCAGCTTCGTAGCAAGGTCATCACAACCACCGCCACGTCATCCCTTTTCGATGATCATAAAATAGTACTCAGCTCCAGTAATAATCAATCTACTACTACTCCTCACTTACTCCCCAACCACACTCCACCGGTAAACTCCGATCCTTCACCTCTCTCTCTCTCTCTTTTCTTTGACGACGGACACCGCCGTTGCCTCGACTTCGTCGATCTGTCCGATTCAACCATCACGGAGGCCGGTGTGCTCGCCGTCGGGGGAGATGGGTGTCCAGAAAAGAAATATGGGTGGCTAGAGCATGACCTCAAGGGGTCAGTAACCGAGTTACATGTGACTGGAGTCCGGCGACCGGTGACTGGAGTCCGGCGACCGGTGACTGGAGTCCGGCGACCGGTGACCAGAGTCCGGCGGCCGGTGACCGGAGTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

194

Amino Acids

21.03

Weight (kDa)

9.38

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25310
fragaria_vesca FvH4_2g28831 FvH4_4g07691 FvH4_6g35481
malus_domestica MD15G1127300.v1.1
prunus_persica Prupe.1G483000_v2.0.a1
pyrus_communis pycom15g11470 pycom15g11480
rosa_chinensis RchiOBHm_Chr6g0297591
rosa_laevigata RLG00000011579
rosa_multiflora Rmu_ssc0000319.1_g000009
rosa_roxburghii Rroxscaffold_7G00170330
rosa_rugosa Rorug06G0274100
rosa_samantha Rh6AG384900 Rh6BG393000 Rh6CG398800 Rh6DG385400
rosa_wichuraiana Rw6G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc16I TGCGCA 1 cut(s) 47
AciI CCGC 3 cut(s) 186, 340, 559
AclWI GGATC 2 cut(s) 52, 290
AcoI YGGCCR 1 cut(s) 560
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 9 cut(s) 499, 506, 520, 527, 541, 555, 562, 569, 576
AflIII ACRYGT 1 cut(s) 478
AgeI ACCGGT 4 cut(s) 283, 499, 520, 541
AgsI TTSAA 1 cut(s) 375
AjiI CACGTC 1 cut(s) 192
AluBI AGCT 2 cut(s) 160, 228
AluI AGCT 2 cut(s) 160, 228
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 2 cut(s) 52, 290
AoxI GGCC 2 cut(s) 387, 560
AsiGI ACCGGT 4 cut(s) 283, 499, 520, 541
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 5 cut(s) 294, 514, 535, 556, 577
AvaII GGWCC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 399
BccI CCATC 3 cut(s) 145, 386, 407
BceAI ACGGC 3 cut(s) 97, 327, 386
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 443
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
BmcAI AGTACT 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 11, 106
BoxI GACNNNNGTC 5 cut(s) 488, 509, 530, 551, 572
BpmI CTGGAG 4 cut(s) 214, 507, 528, 549
BpuEI CTTGAG 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 62
BsaWI WCCGGW 6 cut(s) 283, 499, 520, 541, 569, 576
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 238, 268
Bsc4I CCNNNNNNNGG 9 cut(s) 499, 506, 520, 527, 541, 555, 562, 569, 576
Bse118I RCCGGY 6 cut(s) 283, 389, 499, 520, 541, 562
Bse1I ACTGG 4 cut(s) 231, 490, 511, 532
Bse3DI GCAATG 2 cut(s) 48, 138
Bse8I GATNNNNATC 1 cut(s) 62
BseGI GGATG 1 cut(s) 194
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 9 cut(s) 499, 506, 520, 527, 541, 555, 562, 569, 576
BseMI GCAATG 2 cut(s) 48, 138
BseMII CTCAG 2 cut(s) 123, 238
BseNI ACTGG 4 cut(s) 231, 490, 511, 532
BseRI GAGGAG 1 cut(s) 246
BseX3I CGGCCG 1 cut(s) 560
Bsh1285I CGRYCG 5 cut(s) 102, 500, 521, 542, 563
BshFI GGCC 2 cut(s) 389, 562
BshTI ACCGGT 4 cut(s) 283, 499, 520, 541
BsiEI CGRYCG 5 cut(s) 102, 500, 521, 542, 563
BsiHKAI GWGCWC 1 cut(s) 399
BslI CCNNNNNNNGG 9 cut(s) 499, 506, 520, 527, 541, 555, 562, 569, 576
BsmAI GTCTC 1 cut(s) 139
BsnI GGCC 2 cut(s) 389, 562
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 5 cut(s) 57, 99, 208, 295, 361
BspACI CCGC 3 cut(s) 186, 340, 559
BspANI GGCC 2 cut(s) 389, 562
BspCNI CTCAG 2 cut(s) 122, 237
BspLI GGNNCC 2 cut(s) 11, 106
BspPI GGATC 2 cut(s) 52, 290
BsrDI GCAATG 2 cut(s) 48, 138
BsrFI RCCGGY 6 cut(s) 283, 389, 499, 520, 541, 562
BsrI ACTGG 4 cut(s) 231, 490, 511, 532
BssAI RCCGGY 6 cut(s) 283, 389, 499, 520, 541, 562
BssMI GATC 5 cut(s) 57, 99, 208, 295, 361
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 109, 224
BstEII GGTNACC 2 cut(s) 544, 565
BstF5I GGATG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 5 cut(s) 60, 102, 211, 298, 364
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 5 cut(s) 57, 99, 208, 295, 361
BstMCI CGRYCG 5 cut(s) 102, 500, 521, 542, 563
BstNSI RCATGY 1 cut(s) 482
BstPAI GACNNNNGTC 5 cut(s) 488, 509, 530, 551, 572
BstPI GGTNACC 2 cut(s) 544, 565
BstZI CGGCCG 1 cut(s) 560
BsuRI GGCC 2 cut(s) 389, 562
BtrI CACGTC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 1 cut(s) 48
Cfr10I RCCGGY 6 cut(s) 283, 389, 499, 520, 541, 562
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 221
CspAI ACCGGT 4 cut(s) 283, 499, 520, 541
CviAII CATG 2 cut(s) 449, 479
CviJI RGCY 6 cut(s) 10, 160, 228, 389, 442, 562
CviKI_1 RGCY 6 cut(s) 10, 160, 228, 389, 442, 562
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 109, 224
DpnI GATC 5 cut(s) 59, 101, 210, 297, 363
DpnII GATC 5 cut(s) 57, 99, 208, 295, 361
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 560
EagI CGGCCG 1 cut(s) 560
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EclXI CGGCCG 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 124
Eco52I CGGCCG 1 cut(s) 560
Eco91I GGTNACC 2 cut(s) 544, 565
EcoO65I GGTNACC 2 cut(s) 544, 565
FaeI CATG 2 cut(s) 452, 482
FaiI YATR 4 cut(s) 213, 435, 450, 480
FatI CATG 2 cut(s) 448, 478
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 1 cut(s) 443
FspI TGCGCA 1 cut(s) 47
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 560
GsuI CTGGAG 4 cut(s) 214, 507, 528, 549
HaeIII GGCC 2 cut(s) 389, 562
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 452, 482
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 8 cut(s) 113, 145, 371, 489, 510, 531, 552, 573
HphI GGTGA 5 cut(s) 294, 514, 535, 556, 577
Hpy166II GTNNAC 2 cut(s) 17, 289
Hpy188I TCNGA 7 cut(s) 91, 99, 112, 124, 150, 295, 370
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 2 cut(s) 17, 289
Hpy99I CGWCG 4 cut(s) 95, 335, 362, 407
HpyAV CCTTC 2 cut(s) 137, 309
HpyCH4IV ACGT 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 109, 224
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 452, 482
HspAI GCGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 5 cut(s) 57, 99, 208, 295, 361
LmnI GCTCC 3 cut(s) 15, 100, 233
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 7 cut(s) 466, 474, 481, 502, 523, 544, 565
MalI GATC 5 cut(s) 59, 101, 210, 297, 363
MboI GATC 5 cut(s) 57, 99, 208, 295, 361
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 399
MlyI GAGTC 5 cut(s) 498, 519, 540, 561, 582
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 8 cut(s) 34, 71, 118, 267, 315, 359, 379, 464
NdeII GATC 5 cut(s) 57, 99, 208, 295, 361
NlaIII CATG 2 cut(s) 452, 482
NlaIV GGNNCC 2 cut(s) 11, 106
NmuCI GTSAC 5 cut(s) 481, 502, 523, 544, 565
NsbI TGCGCA 1 cut(s) 47
NspI RCATGY 1 cut(s) 482
PciI ACATGT 1 cut(s) 478
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 357, 366
PfeI GAWTC 3 cut(s) 113, 145, 371
PflFI GACNNNGTC 1 cut(s) 356
PinAI ACCGGT 4 cut(s) 283, 499, 520, 541
PkrI GCNGC 1 cut(s) 561
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 5 cut(s) 497, 518, 539, 560, 581
PpsI GAGTC 5 cut(s) 497, 518, 539, 560, 581
PscI ACATGT 1 cut(s) 478
PshAI GACNNNNGTC 5 cut(s) 488, 509, 530, 551, 572
PspEI GGTNACC 2 cut(s) 544, 565
PspN4I GGNNCC 2 cut(s) 11, 106
PspPI GGNCC 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 356
PvuI CGATCG 1 cut(s) 102
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 5 cut(s) 57, 99, 208, 295, 361
Sau96I GGNCC 1 cut(s) 124
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 5 cut(s) 498, 519, 540, 561, 582
SduI GDGCHC 1 cut(s) 399
SetI ASST 8 cut(s) 26, 129, 162, 174, 194, 230, 307, 456
SinI GGWCC 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SsiI CCGC 3 cut(s) 186, 340, 559
SspMI CTAG 1 cut(s) 443
TaiI ACGT 1 cut(s) 194
TaqI TCGA 4 cut(s) 56, 204, 351, 360
TatI WGTACW 1 cut(s) 220
TauI GCSGC 1 cut(s) 562
TfiI GAWTC 3 cut(s) 113, 145, 371
TseFI GTSAC 5 cut(s) 481, 502, 523, 544, 565
Tsp45I GTSAC 5 cut(s) 481, 502, 523, 544, 565
TspGWI ACGGA 3 cut(s) 19, 348, 398
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 124
XceI RCATGY 1 cut(s) 482
XspI CTAG 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.