Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012970

Physical Location & Seq

Genomic Coordinates Forward (+)

62186885 .. 62187542

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG393000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGAGTCTCCGCTTACAGACCTCCTCCATCGTCTGGTGTCTGTGCATTGCTTCGATCGTCGTCGTTTTGGTTATTTACGGAAACTCCGACGCTCCGATCGGCTCCTCCGGCTCGAAATCGGACTCTCCGGTCTCGTTTTTGATTCCTATGGTTCAGCTGCGTAGCAAGGTCATCACCACCTCCTCCACGCCCTCGGTTTCCGACGATCATAAAATAGTAATCAGCTCCAGTAATCACCCTACTCCTCGCTTACTCCCCAACCAAACTCCACCAAGAGAAGTGCCGAAACCGAAACGGAAACGGAGGAGAGATCAGAGTGAGCTAGAGGAAGGACTGGCGAGGGCGCGAAGTTCGATACGGAGGGCGGCGGCGGCAGCAGCTTCGGGTGATCCGAACCGTTCGTCAGCACCAACCGGGCACGACGTCGTTCCTTATGGGGCGGTGTATCGTAACCCCCGCGCGTTCCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

158

Amino Acids

17.1

Weight (kDa)

10.27

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25310
fragaria_vesca	FvH4_2g28831 FvH4_4g07691 FvH4_6g35481
malus_domestica	MD15G1127300.v1.1
prunus_persica	Prupe.1G483000_v2.0.a1
pyrus_communis	pycom15g11470 pycom15g11480
rosa_chinensis	RchiOBHm_Chr6g0297591
rosa_laevigata	RLG00000011579
rosa_multiflora	Rmu_ssc0000319.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170330
rosa_rugosa	Rorug06G0274100
rosa_samantha	Rh6AG384900 Rh6BG393000 Rh6CG398800 Rh6DG385400
rosa_wichuraiana	Rw6G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccII	CGCG	3 cut(s)	349, 462, 464
AciI	CCGC	6 cut(s)	13, 368, 371, 374, 443, 460
AclWI	GGATC	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	36
AluBI	AGCT	4 cut(s)	160, 228, 325, 383
AluI	AGCT	4 cut(s)	160, 228, 325, 383
Alw26I	GTCTC	2 cut(s)	14, 139
AlwI	GGATC	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	160, 377, 380
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspLEI	GCGC	2 cut(s)	349, 464
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	3 cut(s)	169, 230, 401
BaeGI	GKGCMC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	147, 389, 392
BccI	CCATC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	14, 139
BfaI	CTAG	1 cut(s)	326
BisI	GCNGC	6 cut(s)	161, 369, 372, 375, 378, 381
BlsI	GCNGC	6 cut(s)	162, 370, 373, 376, 379, 382
Bme1390I	CCNGG	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	2 cut(s)	231, 342
Bse3DI	GCAATG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	231, 342
BseRI	GAGGAG	5 cut(s)	16, 97, 175, 237, 322
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	3 cut(s)	147, 389, 392
Bsh1236I	CGCG	3 cut(s)	349, 462, 464
Bsh1285I	CGRYCG	2 cut(s)	60, 102
BsiEI	CGRYCG	2 cut(s)	60, 102
BsiSI	CCGG	3 cut(s)	111, 131, 417
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	14, 139
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	5 cut(s)	57, 99, 208, 313, 391
BspACI	CCGC	6 cut(s)	13, 368, 371, 374, 443, 460
BspFNI	CGCG	3 cut(s)	349, 462, 464
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	231, 342
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	5 cut(s)	57, 99, 208, 313, 391
BssNI	GRCGYC	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	401
BstACI	GRCGYC	1 cut(s)	426
BstFNI	CGCG	3 cut(s)	349, 462, 464
BstHHI	GCGC	2 cut(s)	349, 464
BstKTI	GATC	5 cut(s)	60, 102, 211, 316, 394
BstMAI	GTCTC	2 cut(s)	14, 139
BstMBI	GATC	5 cut(s)	57, 99, 208, 313, 391
BstMCI	CGRYCG	2 cut(s)	60, 102
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 374, 377, 380
BstSCI	CCNGG	1 cut(s)	416
BstSLI	GKGCMC	1 cut(s)	423
BstUI	CGCG	3 cut(s)	349, 462, 464
BstV1I	GCAGC	3 cut(s)	147, 389, 392
CfoI	GCGC	2 cut(s)	349, 464
CseI	GACGC	1 cut(s)	101
CviJI	RGCY	6 cut(s)	105, 114, 160, 228, 325, 383
CviKI_1	RGCY	6 cut(s)	105, 114, 160, 228, 325, 383
DpnI	GATC	5 cut(s)	59, 101, 210, 315, 393
DpnII	GATC	5 cut(s)	57, 99, 208, 313, 391
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	139
FaiI	YATR	3 cut(s)	152, 213, 438
FauI	CCCGC	1 cut(s)	467
Fnu4HI	GCNGC	6 cut(s)	161, 369, 372, 375, 378, 381
Fsp4HI	GCNGC	6 cut(s)	161, 369, 372, 375, 378, 381
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	2 cut(s)	348, 463
GluI	GCNGC	6 cut(s)	161, 369, 372, 375, 378, 381
GsuI	CTGGAG	1 cut(s)	214
HapII	CCGG	3 cut(s)	111, 131, 417
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	2 cut(s)	349, 464
Hin1I	GRCGYC	1 cut(s)	426
Hin6I	GCGC	2 cut(s)	347, 462
HinP1I	GCGC	2 cut(s)	347, 462
HinfI	GANTC	3 cut(s)	7, 125, 145
HpaII	CCGG	3 cut(s)	111, 131, 417
HphI	GGTGA	3 cut(s)	169, 230, 401
Hpy188I	TCNGA	6 cut(s)	91, 99, 124, 205, 318, 396
Hpy99I	CGWCG	6 cut(s)	65, 68, 95, 209, 428, 431
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 374, 377, 380
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	426
HspAI	GCGC	2 cut(s)	347, 462
Kzo9I	GATC	5 cut(s)	57, 99, 208, 313, 391
LmnI	GCTCC	3 cut(s)	100, 110, 233
LpnPI	CCDG	6 cut(s)	22, 124, 144, 244, 323, 430
Lsp1109I	GCAGC	3 cut(s)	147, 389, 392
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	5 cut(s)	59, 101, 210, 315, 393
MboI	GATC	5 cut(s)	57, 99, 208, 313, 391
MhlI	GDGCHC	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	16, 119
MmeI	TCCRAC	2 cut(s)	114, 228
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	3 cut(s)	111, 131, 417
MspR9I	CCNGG	1 cut(s)	418
MvnI	CGCG	3 cut(s)	349, 462, 464
MwoI	GCNNNNNNNGC	4 cut(s)	111, 374, 377, 380
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	5 cut(s)	57, 99, 208, 313, 391
NlaIV	GGNNCC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 392
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	6 cut(s)	162, 370, 373, 376, 379, 382
Ple19I	CGATCG	2 cut(s)	60, 102
PleI	GAGTC	2 cut(s)	15, 119
PpsI	GAGTC	2 cut(s)	15, 119
PspN4I	GGNNCC	1 cut(s)	106
PvuI	CGATCG	2 cut(s)	60, 102
PvuII	CAGCTG	1 cut(s)	160
SatI	GCNGC	6 cut(s)	161, 369, 372, 375, 378, 381
Sau3AI	GATC	5 cut(s)	57, 99, 208, 313, 391
SchI	GAGTC	2 cut(s)	16, 119
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	8 cut(s)	26, 162, 174, 185, 230, 327, 385, 429
SsiI	CCGC	6 cut(s)	13, 368, 371, 374, 443, 460
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	56, 116, 356
TauI	GCSGC	3 cut(s)	371, 374, 377
TfiI	GAWTC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	160, 377, 380
TspGWI	ACGGA	4 cut(s)	96, 313, 319, 376
Van91I	CCANNNNNTGG	1 cut(s)	36
XspI	CTAG	1 cut(s)	326
ZraI	GACGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.