FvH4_6g35481

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012970
Physical Location & Seq
Forward (+)
27977761 .. 27980895
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35481.t1

Sequence Viewer

Length: 480 bp
ATGGAGAGTCTCCGTTTACAGACCTCTTCCGTCGTCTTGTGGCTGCGCACTGCTTCGATCCTCGTCGTTTTTGTCATTTACGGCAACTCCGACGCTCCAATCGATTCCTCCGACTCCAAATCGGACCTTCCCGTCTCCATTGCGATTCTAATGGTTCAGCTTCGTAGCAAGGTCATCACCACCACCGCCACATCATCCGTTTTCGACAATCATAAAATAGTACTCAGCTCCAGTAATAATCAATCTACTACTACTCCTCACTTACTCCCCAACCAAACTCCACCGACGCTGCCGCAGCCTTGCCGGAGCATGTTCTGCAGAGTGAGGTGCGCCGGGGTCGGTGAAGGAGGCCGGTGTGCTCGCCATCGGGGGAGACTTGAAGCATGGCCGTCTGAGCGTACTCCTCCTCCTCCTAGGGTTTCTGAGGAGGACGACGACAAGGTCTACCTGGAGGTTACTTGTCAACGTGTCCAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

8.35

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25310
fragaria_vesca FvH4_2g28831 FvH4_4g07691 FvH4_6g35481
malus_domestica MD15G1127300.v1.1
prunus_persica Prupe.1G483000_v2.0.a1
pyrus_communis pycom15g11470 pycom15g11480
rosa_chinensis RchiOBHm_Chr6g0297591
rosa_laevigata RLG00000011579
rosa_multiflora Rmu_ssc0000319.1_g000009
rosa_roxburghii Rroxscaffold_7G00170330
rosa_rugosa Rorug06G0274100
rosa_samantha Rh6AG384900 Rh6BG393000 Rh6CG398800 Rh6DG385400
rosa_wichuraiana Rw6G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 131, 440
Acc16I TGCGCA 1 cut(s) 47
AccI GTMKAC 1 cut(s) 444
AciI CCGC 2 cut(s) 186, 293
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 386
AfaI GTAC 2 cut(s) 222, 400
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 1 cut(s) 380
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 2 cut(s) 160, 228
AluI AGCT 2 cut(s) 160, 228
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 3 cut(s) 14, 139, 367
AlwI GGATC 1 cut(s) 52
AoxI GGCC 2 cut(s) 349, 386
ApeKI GCWGC 3 cut(s) 43, 289, 295
AspA2I CCTAGG 1 cut(s) 413
AspLEI GCGC 2 cut(s) 48, 332
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 169, 353
AvaII GGWCC 1 cut(s) 124
AvrII CCTAGG 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 3 cut(s) 30, 276, 307
BccI CCATC 1 cut(s) 372
BceAI ACGGC 2 cut(s) 97, 373
BciT130I CCWGG 1 cut(s) 449
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 14, 139, 367
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 316
BisI GCNGC 4 cut(s) 44, 290, 293, 296
BlnI CCTAGG 1 cut(s) 413
BlsI GCNGC 4 cut(s) 45, 291, 294, 297
BmcAI AGTACT 1 cut(s) 222
Bme1390I CCNGG 2 cut(s) 334, 449
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 334, 449
BpmI CTGGAG 2 cut(s) 214, 470
BpuMI CCSGG 1 cut(s) 334
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 333, 413
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 238, 268, 391, 421
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 449
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 333, 413
BseGI GGATG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 3 cut(s) 238, 384, 414
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 5 cut(s) 246, 393, 396, 399, 440
BseXI GCAGC 3 cut(s) 30, 276, 307
BshFI GGCC 2 cut(s) 351, 388
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 3 cut(s) 304, 333, 352
BsmAI GTCTC 3 cut(s) 14, 139, 367
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 2 cut(s) 351, 388
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 2 cut(s) 186, 293
BspANI GGCC 2 cut(s) 351, 388
BspCNI CTCAG 3 cut(s) 237, 385, 415
BspDI ATCGAT 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 320
BspPI GGATC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 2 cut(s) 333, 413
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 449
Bst6I CTCTTC 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 224, 393, 423
BstF5I GGATG 1 cut(s) 194
BstHHI GCGC 2 cut(s) 48, 332
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 3 cut(s) 14, 139, 367
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 295, 315, 394
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 332, 447
BstSFI CTRYAG 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 30, 276, 307
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 2 cut(s) 351, 388
BsuTUI ATCGAT 1 cut(s) 102
BtsCI GGATG 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 2 cut(s) 48, 332
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 2 cut(s) 101, 295
Csp6I GTAC 2 cut(s) 221, 399
CviAII CATG 2 cut(s) 310, 384
CviJI RGCY 6 cut(s) 43, 160, 228, 298, 351, 388
CviKI_1 RGCY 6 cut(s) 43, 160, 228, 298, 351, 388
CviQI GTAC 2 cut(s) 221, 399
DdeI CTNAG 3 cut(s) 224, 393, 423
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DrdI GACNNNNNNGTC 2 cut(s) 131, 440
DseDI GACNNNNNNGTC 2 cut(s) 131, 440
EaeI YGGCCR 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 413
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 313, 387
FaiI YATR 3 cut(s) 213, 311, 385
FatI CATG 2 cut(s) 309, 383
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 4 cut(s) 44, 290, 293, 296
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 4 cut(s) 44, 290, 293, 296
FspBI CTAG 1 cut(s) 414
FspI TGCGCA 1 cut(s) 47
GlaI GCGC 2 cut(s) 47, 331
GluI GCNGC 4 cut(s) 44, 290, 293, 296
GsuI CTGGAG 2 cut(s) 214, 470
HaeIII GGCC 2 cut(s) 351, 388
HapII CCGG 3 cut(s) 304, 333, 352
HgaI GACGC 2 cut(s) 101, 295
HhaI GCGC 2 cut(s) 48, 332
Hin1II CATG 2 cut(s) 313, 387
Hin6I GCGC 2 cut(s) 46, 330
HinP1I GCGC 2 cut(s) 46, 330
HincII GTYRAC 1 cut(s) 464
HindII GTYRAC 1 cut(s) 464
HinfI GANTC 4 cut(s) 7, 104, 113, 145
HpaII CCGG 3 cut(s) 304, 333, 352
HphI GGTGA 2 cut(s) 169, 353
Hpy166II GTNNAC 3 cut(s) 17, 445, 464
Hpy188I TCNGA 5 cut(s) 91, 112, 124, 394, 424
Hpy8I GTNNAC 3 cut(s) 17, 445, 464
Hpy99I CGWCG 5 cut(s) 35, 68, 95, 289, 437
HpyAV CCTTC 2 cut(s) 137, 338
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 3 cut(s) 295, 315, 394
HpyF3I CTNAG 3 cut(s) 224, 393, 423
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 2 cut(s) 313, 387
HspAI GCGC 2 cut(s) 46, 330
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 100, 233, 306
LpnPI CCDG 6 cut(s) 244, 317, 346, 365, 434, 461
Lsp1109I GCAGC 3 cut(s) 30, 276, 307
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 1 cut(s) 454
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 361
MlyI GAGTC 2 cut(s) 16, 107
MmeI TCCRAC 2 cut(s) 114, 135
MspI CCGG 3 cut(s) 304, 333, 352
MspR9I CCNGG 2 cut(s) 334, 449
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 3 cut(s) 295, 315, 394
NciI CCSGG 1 cut(s) 334
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 313, 387
NsbI TGCGCA 1 cut(s) 47
NspI RCATGY 1 cut(s) 313
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 99, 108
PfeI GAWTC 2 cut(s) 104, 145
PflFI GACNNNGTC 1 cut(s) 440
PkrI GCNGC 4 cut(s) 45, 291, 294, 297
PleI GAGTC 2 cut(s) 15, 107
PpsI GAGTC 2 cut(s) 15, 107
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 320
PsyI GACNNNGTC 1 cut(s) 440
RsaI GTAC 2 cut(s) 222, 400
RsaNI GTAC 2 cut(s) 221, 399
SatI GCNGC 4 cut(s) 44, 290, 293, 296
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 124
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 2 cut(s) 16, 107
ScrFI CCNGG 2 cut(s) 334, 449
SduI GDGCHC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 316
SinI GGWCC 1 cut(s) 124
SsiI CCGC 2 cut(s) 186, 293
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 2 cut(s) 332, 447
StyI CCWWGG 1 cut(s) 413
TaiI ACGT 1 cut(s) 469
TaqI TCGA 3 cut(s) 56, 102, 204
TatI WGTACW 1 cut(s) 220
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 2 cut(s) 104, 145
TscAI CASTG 1 cut(s) 55
TseI GCWGC 3 cut(s) 43, 289, 295
TspGWI ACGGA 2 cut(s) 19, 187
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 124
XceI RCATGY 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 1 cut(s) 414
ZrmI AGTACT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.