Rorug06G0274100

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012970
Physical Location & Seq
Reverse (-)
42114835 .. 42119732
4898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0274100.1

Sequence Viewer

Length: 750 bp
ATGGCACAACGCTCTCATGTACCAAAGTTTGGCAATTGGGAAGGTGAAGAAAATGTTCCCTACACAGCCTATTTTGATAAGGCGCGAAAGGGTCGAACTGGGCCTGGGGGAAAGATGATTAATCCAAATGACCCCCAAGAGAACCCTGATCTCCTTAACGATATGTCATCAGTCACATCATCTCCTCCCAGAGTTAGAGCTGAACCAGAAAGACAAGATCATGAACGGGGAAGAAGCAGGGAGGATATTGACCAAAGGCAATATGCCAACTCTCCAGCACACCGCGAAAATCTGAGTCGCAAAACTTCTGGTGAATCAACATATCAACCTGGTAGAGGGCGTGGAACAAATTCTGGTGAAACTCATCGAAGACCTGCACGACAAAGTGCTGGCTCTGAGCAGAGCATTGAACGTTCACCTCTCCATCGCCAGGCAAGGGCCACGGGGAGAGATTCTCCTTCCTGGGAGGGAAAGCCTTCATATGAAAGTAGCCATGGTACTCCTGGAAGATCCCGTCTTAAGCCTCGCGATGAAAGTCCTGACAAAGGTGCTGCTGTCCCGAAATTTGGTGAGTGGGATGAGAACAACCCGGCATCAGCTGATGGTTTCACTCACATTTTCAACAAAGTGAGGGAGGAGAAGGCAGGAAAAGTTCCTGGCACACCACCTGAGCCATCGTACCACACTCAACGGAAGCCTGCTGGCAATGACAGTGCTAAGAGTTGCTGCTTTCCATGGAGCAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

249

Amino Acids

27.76

Weight (kDa)

9.54

Isoelectric Point (pI)

62.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 3 - 32 6e-09 Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage PF05627 182 - 214 1.1e-20 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25310
fragaria_vesca FvH4_2g28831 FvH4_4g07691 FvH4_6g35481
malus_domestica MD15G1127300.v1.1
prunus_persica Prupe.1G483000_v2.0.a1
pyrus_communis pycom15g11470 pycom15g11480
rosa_chinensis RchiOBHm_Chr6g0297591
rosa_laevigata RLG00000011579
rosa_multiflora Rmu_ssc0000319.1_g000009
rosa_roxburghii Rroxscaffold_7G00170330
rosa_rugosa Rorug06G0274100
rosa_samantha Rh6AG384900 Rh6BG393000 Rh6CG398800 Rh6DG385400
rosa_wichuraiana Rw6G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AccB7I CCANNNNNTGG 1 cut(s) 29
AccII CGCG 3 cut(s) 85, 285, 528
AciI CCGC 1 cut(s) 283
AclI AACGTT 1 cut(s) 412
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 2 cut(s) 349, 563
AfaI GTAC 3 cut(s) 21, 499, 680
AfiI CCNNNNNNNGG 6 cut(s) 29, 335, 430, 436, 545, 566
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 2 cut(s) 410, 622
AjnI CCWGG 6 cut(s) 103, 328, 429, 461, 502, 655
AluBI AGCT 2 cut(s) 200, 599
AluI AGCT 2 cut(s) 200, 599
AlwI GGATC 1 cut(s) 504
AoxI GGCC 2 cut(s) 101, 438
ApeKI GCWGC 2 cut(s) 551, 726
ApoI RAATTY 2 cut(s) 349, 563
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 3 cut(s) 54, 349, 475
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 101, 438
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 5 cut(s) 56, 323, 368, 408, 581
BbsI GAAGAC 1 cut(s) 376
BbvI GCAGC 2 cut(s) 538, 713
BccI CCATC 3 cut(s) 432, 596, 682
BciT130I CCWGG 6 cut(s) 105, 330, 431, 463, 504, 657
BcnI CCSGG 1 cut(s) 590
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 382
BisI GCNGC 2 cut(s) 552, 727
BlsI GCNGC 2 cut(s) 553, 728
Bme1390I CCNGG 7 cut(s) 105, 330, 431, 463, 504, 590, 657
BmgT120I GGNCC 2 cut(s) 101, 438
BmrFI CCNGG 7 cut(s) 105, 330, 431, 463, 504, 590, 657
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 602
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 376
BplI GAGNNNNNCTC 2 cut(s) 439, 471
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 669
BpuMI CCSGG 1 cut(s) 590
BsaJI CCNNGG 5 cut(s) 104, 441, 462, 493, 734
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 335, 430, 436, 545, 566
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 712
BseBI CCWGG 6 cut(s) 105, 330, 431, 463, 504, 657
BseDI CCNNGG 5 cut(s) 104, 441, 462, 493, 734
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 6 cut(s) 29, 335, 430, 436, 545, 566
BseMI GCAATG 1 cut(s) 712
BseMII CTCAG 3 cut(s) 284, 387, 660
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 2 cut(s) 174, 650
BseXI GCAGC 2 cut(s) 538, 713
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 3 cut(s) 85, 285, 528
BshFI GGCC 2 cut(s) 103, 440
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 6 cut(s) 29, 335, 430, 436, 545, 566
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 2 cut(s) 103, 440
Bsp143I GATC 3 cut(s) 148, 217, 509
Bsp19I CCATGG 2 cut(s) 493, 734
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 1 cut(s) 283
BspANI GGCC 2 cut(s) 103, 440
BspCNI CTCAG 3 cut(s) 285, 388, 661
BspFNI CGCG 3 cut(s) 85, 285, 528
BspHI TCATGA 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 1 cut(s) 504
BspTI CTTAAG 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 712
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 5 cut(s) 104, 441, 462, 493, 734
BssMI GATC 3 cut(s) 148, 217, 509
BssT1I CCWWGG 2 cut(s) 493, 734
Bst2UI CCWGG 6 cut(s) 105, 330, 431, 463, 504, 657
Bst4CI ACNGT 1 cut(s) 713
BstAFI CTTAAG 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 391, 699, 703
BstDEI CTNAG 4 cut(s) 293, 396, 669, 717
BstDSI CCRYGG 3 cut(s) 441, 493, 734
BstENI CCTNNNNNAGG 2 cut(s) 333, 543
BstF5I GGATG 1 cut(s) 583
BstFNI CGCG 3 cut(s) 85, 285, 528
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 3 cut(s) 151, 220, 512
BstMBI GATC 3 cut(s) 148, 217, 509
BstNI CCWGG 6 cut(s) 105, 330, 431, 463, 504, 657
BstSCI CCNGG 7 cut(s) 103, 328, 429, 461, 502, 588, 655
BstUI CGCG 3 cut(s) 85, 285, 528
BstV1I GCAGC 2 cut(s) 538, 713
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BsuRI GGCC 2 cut(s) 103, 440
BtgI CCRYGG 3 cut(s) 441, 493, 734
BtgZI GCGATG 2 cut(s) 410, 543
BtsCI GGATG 1 cut(s) 583
BtsIMutI CAGTG 1 cut(s) 718
BtuMI TCGCGA 1 cut(s) 528
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 3 cut(s) 391, 699, 703
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 101, 438
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 3 cut(s) 20, 498, 679
CviAII CATG 4 cut(s) 17, 221, 494, 735
CviQI GTAC 3 cut(s) 20, 498, 679
DdeI CTNAG 4 cut(s) 293, 396, 669, 717
DpnI GATC 3 cut(s) 150, 219, 511
DpnII GATC 3 cut(s) 148, 217, 509
Eco130I CCWWGG 2 cut(s) 493, 734
EcoNI CCTNNNNNAGG 2 cut(s) 333, 543
EcoRII CCWGG 6 cut(s) 103, 328, 429, 461, 502, 655
EcoT14I CCWWGG 2 cut(s) 493, 734
ErhI CCWWGG 2 cut(s) 493, 734
FaeI CATG 4 cut(s) 20, 224, 497, 738
FaiI YATR 9 cut(s) 18, 164, 222, 264, 322, 481, 483, 495, 736
FaqI GGGAC 1 cut(s) 542
FatI CATG 4 cut(s) 16, 220, 493, 734
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 552, 727
FokI GGATG 1 cut(s) 590
Fsp4HI GCNGC 2 cut(s) 552, 727
GlaI GCGC 1 cut(s) 84
GluI GCNGC 2 cut(s) 552, 727
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 103, 440
HapII CCGG 1 cut(s) 590
HhaI GCGC 1 cut(s) 85
Hin1II CATG 4 cut(s) 20, 224, 497, 738
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 3 cut(s) 295, 314, 452
HpaII CCGG 1 cut(s) 590
HphI GGTGA 5 cut(s) 56, 323, 368, 408, 581
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 294, 397
Hpy188III TCNNGA 4 cut(s) 221, 527, 539, 559
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 4 cut(s) 35, 468, 486, 634
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 1 cut(s) 377
HpyF3I CTNAG 4 cut(s) 293, 396, 669, 717
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 4 cut(s) 20, 224, 497, 738
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 3 cut(s) 148, 217, 509
LmnI GCTCC 1 cut(s) 738
Lsp1109I GCAGC 2 cut(s) 538, 713
LweI GCATC 1 cut(s) 602
MabI ACCWGGT 1 cut(s) 328
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 172
MalI GATC 3 cut(s) 150, 219, 511
MboI GATC 3 cut(s) 148, 217, 509
MboII GAAGA 4 cut(s) 59, 243, 381, 519
MfeI CAATTG 1 cut(s) 34
MflI RGATCY 1 cut(s) 509
MluCI AATT 3 cut(s) 34, 349, 563
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 8 cut(s) 195, 235, 329, 429, 460, 534, 624, 628
MroXI GAANNNNTTC 3 cut(s) 54, 349, 475
MseI TTAA 3 cut(s) 120, 156, 519
MspA1I CMGCKG 1 cut(s) 599
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 7 cut(s) 105, 330, 431, 463, 504, 590, 657
MunI CAATTG 1 cut(s) 34
MvaI CCWGG 6 cut(s) 105, 330, 431, 463, 504, 657
MvnI CGCG 3 cut(s) 85, 285, 528
NciI CCSGG 1 cut(s) 590
NcoI CCATGG 2 cut(s) 493, 734
NdeI CATATG 1 cut(s) 481
NdeII GATC 3 cut(s) 148, 217, 509
NlaIII CATG 4 cut(s) 20, 224, 497, 738
NmuCI GTSAC 1 cut(s) 172
NruI TCGCGA 1 cut(s) 528
PagI TCATGA 1 cut(s) 220
PdmI GAANNNNTTC 3 cut(s) 54, 349, 475
PfeI GAWTC 2 cut(s) 314, 452
PflMI CCANNNNNTGG 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 2 cut(s) 553, 728
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 412
Psp6I CCWGG 6 cut(s) 103, 328, 429, 461, 502, 655
PspGI CCWGG 6 cut(s) 103, 328, 429, 461, 502, 655
PspPI GGNCC 2 cut(s) 101, 438
PsuI RGATCY 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 599
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 3 cut(s) 21, 499, 680
RsaNI GTAC 3 cut(s) 20, 498, 679
SaqAI TTAA 3 cut(s) 120, 156, 519
SatI GCNGC 2 cut(s) 552, 727
Sau3AI GATC 3 cut(s) 148, 217, 509
Sau96I GGNCC 2 cut(s) 101, 438
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 7 cut(s) 105, 330, 431, 463, 504, 590, 657
SetI ASST 9 cut(s) 46, 202, 331, 376, 415, 421, 550, 601, 670
SexAI ACCWGGT 1 cut(s) 328
SfaNI GCATC 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 3 cut(s) 34, 349, 563
SsiI CCGC 1 cut(s) 283
StyD4I CCNGG 7 cut(s) 103, 328, 429, 461, 502, 588, 655
StyI CCWWGG 2 cut(s) 493, 734
TaaI ACNGT 1 cut(s) 713
TaiI ACGT 1 cut(s) 415
TaqI TCGA 2 cut(s) 94, 367
TasI AATT 3 cut(s) 34, 349, 563
TfiI GAWTC 2 cut(s) 314, 452
Tru1I TTAA 3 cut(s) 120, 156, 519
Tru9I TTAA 3 cut(s) 120, 156, 519
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 2 cut(s) 551, 726
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 4 cut(s) 237, 468, 498, 546
TspGWI ACGGA 1 cut(s) 706
TspRI CASTG 1 cut(s) 718
Van91I CCANNNNNTGG 1 cut(s) 29
Vha464I CTTAAG 1 cut(s) 518
VspI ATTAAT 1 cut(s) 120
XagI CCTNNNNNAGG 2 cut(s) 333, 543
XapI RAATTY 2 cut(s) 349, 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XmnI GAANNNNTTC 3 cut(s) 54, 349, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.