Rh6DG385400

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012970
Physical Location & Seq
Forward (+)
57838401 .. 57841748
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG385400.1

Sequence Viewer

Length: 843 bp
ATGGAGAGTCTCCGCTTACAGACCTCCTCCATCGTCTGGTGTCTGTGCATTGCTTCGATCGTCGTCGTTTTGGTTATTTACGGAAACTCCGACTCTCCGATCGGCTCCTCCGGCTCGAAATCGGACTCTCCGGTCTCGTTTTTGATTCCTATGGTTCAGCTGCGTAGCAAGGTCATCACCACCTCCTCCACGCCCTCGGTTTCCGACGATCATAAAATAGTAATCAGCTCCAGTAATCACCCTACTCCTCGCTTACTCCCCAACCAAACTCCACCAAGAGAAGTGCCGAAACCGAAACGGAAACGGAGGAGAGATCAGAGTGAGCTAGAGGAAGGACTGGCGAGGGCGCGAAGTTCGATACGGAGGGCGGCGGCGGCAGCAGCTTCGGGTGATCCGAACCGTTCGTCAGCACCAACCGGGCACGACGTCGTTCCTTATGGGGCGGTGTATCGTAACCCCCGCGCGTTCCATCAGAGCTATCTTGAAATGGAGAGGAAATTCAAGGTGTATGTGTACTCAGAAGGTGACCTACCAATAACTCACGATGGCCCATGCAAGGACATATACTCGATCGAAGGGAGGTTCATACATGAAATGGAGACTGGGGCAGAGGCTGGGAGGTTTAGGACCAAGAACCCTAAGGAGGCTCACGTTTACTTTATGCCTTTCAGTGTGACTTGGATGGTGAAGTACCTATACAAGCCCTTGTCCTATAACCTCACACCTCTCAGGGAATATGTCTCTGATTATGTGAGACTCGTGTCTGAGAAGTACCCCTTTTGGAATAGGACTTCTGGGGCGGACCACTTCATGCTTGCTTGTCATGATTGGGTAATGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

280

Amino Acids

31.62

Weight (kDa)

9.27

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 164 - 276 1.2e-16 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25310
fragaria_vesca FvH4_2g28831 FvH4_4g07691 FvH4_6g35481
malus_domestica MD15G1127300.v1.1
prunus_persica Prupe.1G483000_v2.0.a1
pyrus_communis pycom15g11470 pycom15g11480
rosa_chinensis RchiOBHm_Chr6g0297591
rosa_laevigata RLG00000011579
rosa_multiflora Rmu_ssc0000319.1_g000009
rosa_roxburghii Rroxscaffold_7G00170330
rosa_rugosa Rorug06G0274100
rosa_samantha Rh6AG384900 Rh6BG393000 Rh6CG398800 Rh6DG385400
rosa_wichuraiana Rw6G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 1 cut(s) 429
AccB7I CCANNNNNTGG 1 cut(s) 36
AccII CGCG 3 cut(s) 349, 462, 464
AciI CCGC 7 cut(s) 13, 368, 371, 374, 443, 460, 800
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 3 cut(s) 515, 692, 773
AfiI CCNNNNNNNGG 3 cut(s) 36, 556, 643
AgsI TTSAA 2 cut(s) 485, 502
AluBI AGCT 5 cut(s) 160, 228, 325, 383, 477
AluI AGCT 5 cut(s) 160, 228, 325, 383, 477
Alw26I GTCTC 5 cut(s) 14, 139, 593, 745, 748
AlwI GGATC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 2 cut(s) 547, 837
ApeKI GCWGC 3 cut(s) 160, 377, 380
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 2 cut(s) 349, 464
AspS9I GGNCC 3 cut(s) 548, 627, 802
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 5 cut(s) 169, 230, 401, 536, 697
AvaII GGWCC 2 cut(s) 627, 802
AxyI CCTNAGG 1 cut(s) 639
BaeGI GKGCMC 1 cut(s) 423
BarI GAAGNNNNNNTAC 4 cut(s) 513, 545, 680, 712
BauI CACGAG 1 cut(s) 758
BbvI GCAGC 3 cut(s) 147, 389, 392
BccI CCATC 4 cut(s) 38, 477, 539, 676
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 5 cut(s) 14, 139, 593, 745, 748
BfaI CTAG 1 cut(s) 326
BisI GCNGC 6 cut(s) 161, 369, 372, 375, 378, 381
BlsI GCNGC 6 cut(s) 162, 370, 373, 376, 379, 382
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 2 cut(s) 627, 802
BmgT120I GGNCC 3 cut(s) 548, 627, 802
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 418
BmrI ACTGGG 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 612
BoxI GACNNNNGTC 1 cut(s) 760
BpmI CTGGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 556, 643
Bse1I ACTGG 3 cut(s) 231, 342, 607
Bse21I CCTNAGG 1 cut(s) 639
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 687
BseLI CCNNNNNNNGG 3 cut(s) 36, 556, 643
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 531, 742, 756
BseNI ACTGG 3 cut(s) 231, 342, 607
BseRI GAGGAG 5 cut(s) 16, 97, 175, 237, 322
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 3 cut(s) 147, 389, 392
BseYI CCCAGC 1 cut(s) 614
Bsh1236I CGCG 3 cut(s) 349, 462, 464
Bsh1285I CGRYCG 3 cut(s) 60, 102, 573
BshFI GGCC 2 cut(s) 549, 839
BsiEI CGRYCG 3 cut(s) 60, 102, 573
BsiSI CCGG 3 cut(s) 111, 131, 417
BslI CCNNNNNNNGG 3 cut(s) 36, 556, 643
BsmAI GTCTC 5 cut(s) 14, 139, 593, 745, 748
BsnI GGCC 2 cut(s) 549, 839
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 6 cut(s) 57, 99, 208, 313, 391, 570
BspACI CCGC 7 cut(s) 13, 368, 371, 374, 443, 460, 800
BspANI GGCC 2 cut(s) 549, 839
BspCNI CTCAG 3 cut(s) 530, 741, 757
BspFNI CGCG 3 cut(s) 349, 462, 464
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 3 cut(s) 231, 342, 607
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 6 cut(s) 57, 99, 208, 313, 391, 570
BssNI GRCGYC 1 cut(s) 426
BssSI CACGAG 1 cut(s) 758
Bst2BI CACGAG 1 cut(s) 758
Bst4CI ACNGT 1 cut(s) 401
BstACI GRCGYC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 816
BstDEI CTNAG 4 cut(s) 517, 639, 728, 765
BstEII GGTNACC 1 cut(s) 524
BstF5I GGATG 1 cut(s) 687
BstFNI CGCG 3 cut(s) 349, 462, 464
BstHHI GCGC 2 cut(s) 349, 464
BstKTI GATC 6 cut(s) 60, 102, 211, 316, 394, 573
BstMAI GTCTC 5 cut(s) 14, 139, 593, 745, 748
BstMBI GATC 6 cut(s) 57, 99, 208, 313, 391, 570
BstMCI CGRYCG 3 cut(s) 60, 102, 573
BstMWI GCNNNNNNNGC 4 cut(s) 111, 374, 377, 380
BstPAI GACNNNNGTC 1 cut(s) 760
BstPI GGTNACC 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 3 cut(s) 349, 462, 464
BstV1I GCAGC 3 cut(s) 147, 389, 392
Bsu36I CCTNAGG 1 cut(s) 639
BsuRI GGCC 2 cut(s) 549, 839
BtsCI GGATG 1 cut(s) 687
BtsIMutI CAGTG 1 cut(s) 676
Cac8I GCNNGC 1 cut(s) 816
CaiI CAGNNNCTG 1 cut(s) 614
CciI TCATGA 1 cut(s) 823
CfoI GCGC 2 cut(s) 349, 464
Cfr13I GGNCC 3 cut(s) 548, 627, 802
Csp6I GTAC 3 cut(s) 514, 691, 772
CviAII CATG 4 cut(s) 552, 590, 811, 824
CviQI GTAC 3 cut(s) 514, 691, 772
DdeI CTNAG 4 cut(s) 517, 639, 728, 765
DpnI GATC 6 cut(s) 59, 101, 210, 315, 393, 572
DpnII GATC 6 cut(s) 57, 99, 208, 313, 391, 570
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 815
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 627, 802
Eco81I CCTNAGG 1 cut(s) 639
Eco91I GGTNACC 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 524
FaeI CATG 4 cut(s) 555, 593, 814, 827
FalI AAGNNNNNCTT 2 cut(s) 761, 793
FatI CATG 4 cut(s) 551, 589, 810, 823
FauI CCCGC 1 cut(s) 467
Fnu4HI GCNGC 6 cut(s) 161, 369, 372, 375, 378, 381
FokI GGATG 1 cut(s) 694
Fsp4HI GCNGC 6 cut(s) 161, 369, 372, 375, 378, 381
FspBI CTAG 1 cut(s) 326
GlaI GCGC 2 cut(s) 348, 463
GluI GCNGC 6 cut(s) 161, 369, 372, 375, 378, 381
GsaI CCCAGC 1 cut(s) 618
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 2 cut(s) 549, 839
HapII CCGG 3 cut(s) 111, 131, 417
HhaI GCGC 2 cut(s) 349, 464
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 4 cut(s) 555, 593, 814, 827
Hin6I GCGC 2 cut(s) 347, 462
HinP1I GCGC 2 cut(s) 347, 462
HinfI GANTC 5 cut(s) 7, 92, 125, 145, 756
HpaII CCGG 3 cut(s) 111, 131, 417
HphI GGTGA 5 cut(s) 169, 230, 401, 536, 697
Hpy166II GTNNAC 2 cut(s) 514, 655
Hpy188III TCNNGA 3 cut(s) 482, 542, 824
Hpy8I GTNNAC 2 cut(s) 514, 655
Hpy99I CGWCG 5 cut(s) 65, 68, 209, 428, 431
HpyAV CCTTC 3 cut(s) 326, 515, 569
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 2 cut(s) 426, 651
HpyCH4V TGCA 2 cut(s) 48, 555
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 374, 377, 380
HpyF3I CTNAG 4 cut(s) 517, 639, 728, 765
HpySE526I ACGT 2 cut(s) 426, 651
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 4 cut(s) 555, 593, 814, 827
HspAI GCGC 2 cut(s) 347, 462
Kzo9I GATC 6 cut(s) 57, 99, 208, 313, 391, 570
LmnI GCTCC 2 cut(s) 110, 233
Lsp1109I GCAGC 3 cut(s) 147, 389, 392
MaeI CTAG 1 cut(s) 326
MaeII ACGT 2 cut(s) 426, 651
MaeIII GTNAC 3 cut(s) 452, 524, 673
MalI GATC 6 cut(s) 59, 101, 210, 315, 393, 572
MboI GATC 6 cut(s) 57, 99, 208, 313, 391, 570
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 1 cut(s) 497
MlyI GAGTC 4 cut(s) 16, 86, 119, 750
MmeI TCCRAC 2 cut(s) 114, 228
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 3 cut(s) 111, 131, 417
MspR9I CCNGG 1 cut(s) 418
MvnI CGCG 3 cut(s) 349, 462, 464
MwoI GCNNNNNNNGC 4 cut(s) 111, 374, 377, 380
NciI CCSGG 1 cut(s) 418
NdeII GATC 6 cut(s) 57, 99, 208, 313, 391, 570
NlaIII CATG 4 cut(s) 555, 593, 814, 827
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 524, 673
PagI TCATGA 1 cut(s) 823
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 392
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 6 cut(s) 162, 370, 373, 376, 379, 382
Ple19I CGATCG 3 cut(s) 60, 102, 573
PleI GAGTC 4 cut(s) 15, 86, 119, 750
PpsI GAGTC 4 cut(s) 15, 86, 119, 750
PshAI GACNNNNGTC 1 cut(s) 760
PspEI GGTNACC 1 cut(s) 524
PspFI CCCAGC 1 cut(s) 614
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 3 cut(s) 548, 627, 802
PstNI CAGNNNCTG 1 cut(s) 614
PvuI CGATCG 3 cut(s) 60, 102, 573
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 3 cut(s) 515, 692, 773
RsaNI GTAC 3 cut(s) 514, 691, 772
SatI GCNGC 6 cut(s) 161, 369, 372, 375, 378, 381
Sau3AI GATC 6 cut(s) 57, 99, 208, 313, 391, 570
Sau96I GGNCC 3 cut(s) 548, 627, 802
SchI GAGTC 4 cut(s) 16, 86, 119, 750
ScrFI CCNGG 1 cut(s) 418
SduI GDGCHC 1 cut(s) 423
SinI GGWCC 2 cut(s) 627, 802
Sse9I AATT 1 cut(s) 497
SsiI CCGC 7 cut(s) 13, 368, 371, 374, 443, 460, 800
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 2 cut(s) 429, 654
TaqI TCGA 5 cut(s) 56, 116, 356, 569, 573
TasI AATT 1 cut(s) 497
TatI WGTACW 1 cut(s) 513
TauI GCSGC 3 cut(s) 371, 374, 377
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 2 cut(s) 524, 673
TseI GCWGC 3 cut(s) 160, 377, 380
Tsp45I GTSAC 2 cut(s) 524, 673
TspDTI ATGAA 3 cut(s) 574, 606, 799
TspGWI ACGGA 4 cut(s) 96, 313, 319, 376
TspRI CASTG 1 cut(s) 676
Van91I CCANNNNNTGG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 627, 802
XapI RAATTY 1 cut(s) 497
XspI CTAG 1 cut(s) 326
ZraI GACGTC 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.