pycom15g11480

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012970
Physical Location & Seq
Reverse (-)
7772613 .. 7773273
661 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11480.2

Sequence Viewer

Length: 513 bp
ATGAAGAGCTTCCATGCGAAGCACTCCTCTGCGTCCGTACTGCTTTGTTTCTGCATTTCGTCGATCATCGCCGTCGTGGTGATCTGCGGCCAGCATTTCTATTCTCCGGTGATAATATCCGACTCCAAACAAGATCGGTACACTCCTTTATGGATTCCGGTGGTGCAGCTCCGAAGCAAGCTCAAGGGAGCGTATCATCGCCTCGCCATCTCGGATGATCCATCCAGTACTATTCAACGATTTCACAGCAACGACTTCGTAAATCAGACGTCACTAGTAAGTTTCGTCAATTTATCGTCCAGTCAAGAATTTGAACCGCCATTGAATCAGAGACACAAAATCCCCAAAAGGAAAGCGAGCGGAGAGCAAAAGCTGGAGCAGGGACTCGCCCGAGCGCGAGCTTCGATTCGCAGAGCAGCTTCGAGTCCGAACAGTTCGTCAACACCAAACGACGACGTACTATTTCCCGGTGGATCAGTCGTGTATCGTAATCCCGGCGCGTTTTATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

171

Amino Acids

18.85

Weight (kDa)

9.79

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25310
fragaria_vesca FvH4_2g28831 FvH4_4g07691 FvH4_6g35481
malus_domestica MD15G1127300.v1.1
prunus_persica Prupe.1G483000_v2.0.a1
pyrus_communis pycom15g11470 pycom15g11480
rosa_chinensis RchiOBHm_Chr6g0297591
rosa_laevigata RLG00000011579
rosa_multiflora Rmu_ssc0000319.1_g000009
rosa_roxburghii Rroxscaffold_7G00170330
rosa_rugosa Rorug06G0274100
rosa_samantha Rh6AG384900 Rh6BG393000 Rh6CG398800 Rh6DG385400
rosa_wichuraiana Rw6G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 360
AccII CGCG 2 cut(s) 397, 500
AciI CCGC 3 cut(s) 87, 317, 360
AclWI GGATC 2 cut(s) 212, 481
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 4 cut(s) 39, 140, 229, 459
AgsI TTSAA 3 cut(s) 236, 314, 325
AhlI ACTAGT 1 cut(s) 274
AluBI AGCT 6 cut(s) 9, 169, 181, 373, 401, 419
AluI AGCT 6 cut(s) 9, 169, 181, 373, 401, 419
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 2 cut(s) 212, 481
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 166, 416
ApoI RAATTY 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 397, 500
AsuC2I CCSGG 2 cut(s) 468, 495
AsuHPI GGTGA 2 cut(s) 91, 121
AvaI CYCGRG 1 cut(s) 390
BbvI GCAGC 2 cut(s) 178, 428
BccI CCATC 2 cut(s) 215, 229
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BcnI CCSGG 2 cut(s) 468, 495
BcoDI GTCTC 1 cut(s) 325
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 1 cut(s) 275
BisI GCNGC 3 cut(s) 88, 167, 417
BlsI GCNGC 3 cut(s) 89, 168, 418
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 2 cut(s) 468, 495
BmeT110I CYCGRG 1 cut(s) 390
BmrFI CCNGG 2 cut(s) 468, 495
BpmI CTGGAG 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 468, 495
BsaHI GRCGYC 1 cut(s) 269
BsaWI WCCGGW 2 cut(s) 106, 157
Bse1I ACTGG 2 cut(s) 225, 300
BseGI GGATG 2 cut(s) 220, 221
BseNI ACTGG 2 cut(s) 225, 300
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 178, 428
BsgI GTGCAG 1 cut(s) 185
Bsh1236I CGCG 2 cut(s) 397, 500
BshFI GGCC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 4 cut(s) 107, 158, 468, 495
BslFI GGGAC 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 390
Bsp143I GATC 5 cut(s) 63, 81, 133, 217, 473
BspACI CCGC 3 cut(s) 87, 317, 360
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 2 cut(s) 397, 500
BspPI GGATC 2 cut(s) 212, 481
BsrBI CCGCTC 1 cut(s) 360
BsrI ACTGG 2 cut(s) 225, 300
BssMI GATC 5 cut(s) 63, 81, 133, 217, 473
BssNI GRCGYC 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 269
BstC8I GCNNGC 4 cut(s) 92, 179, 358, 399
BstF5I GGATG 2 cut(s) 220, 221
BstFNI CGCG 2 cut(s) 397, 500
BstHHI GCGC 2 cut(s) 397, 500
BstKTI GATC 5 cut(s) 66, 84, 136, 220, 476
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 5 cut(s) 63, 81, 133, 217, 473
BstSCI CCNGG 2 cut(s) 466, 493
BstUI CGCG 2 cut(s) 397, 500
BstV1I GCAGC 2 cut(s) 178, 428
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 2 cut(s) 52, 182
BtsCI GGATG 2 cut(s) 220, 221
Cac8I GCNNGC 4 cut(s) 92, 179, 358, 399
CfoI GCGC 2 cut(s) 397, 500
CseI GACGC 1 cut(s) 21
Csp6I GTAC 4 cut(s) 38, 139, 228, 458
CviAII CATG 1 cut(s) 14
CviJI RGCY 7 cut(s) 9, 90, 169, 181, 373, 401, 419
CviKI_1 RGCY 7 cut(s) 9, 90, 169, 181, 373, 401, 419
CviQI GTAC 4 cut(s) 38, 139, 228, 458
DpnI GATC 5 cut(s) 65, 83, 135, 219, 475
DpnII GATC 5 cut(s) 63, 81, 133, 217, 473
EaeI YGGCCR 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 390
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 151
FaqI GGGAC 1 cut(s) 396
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 88, 167, 417
FokI GGATG 2 cut(s) 208, 227
Fsp4HI GCNGC 3 cut(s) 88, 167, 417
FspBI CTAG 1 cut(s) 275
GlaI GCGC 2 cut(s) 396, 499
GluI GCNGC 3 cut(s) 88, 167, 417
GsuI CTGGAG 1 cut(s) 395
HaeIII GGCC 1 cut(s) 90
HapII CCGG 4 cut(s) 107, 158, 468, 495
HgaI GACGC 1 cut(s) 21
HhaI GCGC 2 cut(s) 397, 500
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 2 cut(s) 395, 498
HinP1I GCGC 2 cut(s) 395, 498
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 6 cut(s) 122, 154, 325, 384, 406, 424
HpaII CCGG 4 cut(s) 107, 158, 468, 495
HphI GGTGA 2 cut(s) 91, 121
Hpy166II GTNNAC 2 cut(s) 141, 441
Hpy188I TCNGA 6 cut(s) 121, 173, 214, 267, 330, 429
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 2 cut(s) 141, 441
Hpy99I CGWCG 4 cut(s) 64, 77, 455, 458
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 2 cut(s) 269, 456
HpyCH4V TGCA 2 cut(s) 54, 166
HpySE526I ACGT 2 cut(s) 269, 456
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 2 cut(s) 395, 498
Kzo9I GATC 5 cut(s) 63, 81, 133, 217, 473
LmnI GCTCC 3 cut(s) 174, 188, 376
LpnPI CCDG 9 cut(s) 104, 120, 171, 238, 313, 359, 365, 481, 508
Lsp1109I GCAGC 2 cut(s) 178, 428
MaeI CTAG 1 cut(s) 275
MaeII ACGT 2 cut(s) 269, 456
MaeIII GTNAC 1 cut(s) 270
MalI GATC 5 cut(s) 65, 83, 135, 219, 475
MbiI CCGCTC 1 cut(s) 360
MboI GATC 5 cut(s) 63, 81, 133, 217, 473
MboII GAAGA 1 cut(s) 16
MluCI AATT 2 cut(s) 289, 308
MlyI GAGTC 3 cut(s) 116, 378, 433
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 2 cut(s) 37, 212
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 4 cut(s) 107, 158, 468, 495
MspR9I CCNGG 2 cut(s) 468, 495
MvnI CGCG 2 cut(s) 397, 500
NciI CCSGG 2 cut(s) 468, 495
NdeII GATC 5 cut(s) 63, 81, 133, 217, 473
NlaIII CATG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 154, 325, 406
PkrI GCNGC 3 cut(s) 89, 168, 418
PleI GAGTC 3 cut(s) 116, 378, 432
PpsI GAGTC 3 cut(s) 116, 378, 432
RsaI GTAC 4 cut(s) 39, 140, 229, 459
RsaNI GTAC 4 cut(s) 38, 139, 228, 458
SatI GCNGC 3 cut(s) 88, 167, 417
Sau3AI GATC 5 cut(s) 63, 81, 133, 217, 473
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 3 cut(s) 116, 378, 433
ScrFI CCNGG 2 cut(s) 468, 495
SetI ASST 8 cut(s) 11, 171, 183, 272, 375, 403, 421, 459
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 2 cut(s) 289, 308
SsiI CCGC 3 cut(s) 87, 317, 360
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 466, 493
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 2 cut(s) 272, 459
TaqI TCGA 3 cut(s) 62, 404, 422
TasI AATT 2 cut(s) 289, 308
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 3 cut(s) 154, 325, 406
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 166, 416
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 25
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 275
ZraI GACGTC 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.