Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016303

Physical Location & Seq

Genomic Coordinates Forward (+)

10803465 .. 10804832

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGTTTCTGCTTATTCTTCTTCTTCTTCCAATGTTTCGGCCTTGTTCATTTTCCTCTTCATGATGAGCACTTCCATGGTTGCCTTGGGCGGCAAGTTTTATGAAGATTTCTACATAACATGGGGAACGCAGAATGCTAAAATGCTCGATTATGGGCAGCTCTTGACTCTCTCCCTCGACAATGTCACTGGCTCGGCTTTTGAATCCTACAATCAATATATGTATGTAAAGATAGACATGCAAATCAAGCTTGTTCCCGGAAACTCCGCTGGTACCGTCACTACATTCTACTTATCCTCAACAGGAGCCTATCATGATGAGATAGACTTCGAATTCCTGGGAAATGTTACTGGTCAGCCTTACATTCTTCACACGAATGTCTTTTGCCAAGGAAAGGGCAACAGAGAGCAGCAATTCTACCTTTGGTTTGATCCTACTGCCGATTTCCACACCTATTCTATACTATGGAATCCCCTAAACATTGTCTTCTTGGTTGATGGCATTCCCATTAGACAGTTCAAGAACCTGGAGTCCTTTGGTATTTCATATCCCAAATACCAGCCTATGAAGCTATACTCCAGTCTCTGGAATGCGGATAACTGGGCTACAAGAGGTGGACTGGAGAAGATAGATTGGACCCAAGCACCCTTTACTGCATCTTACAGGAACTTCAATGCTGATTCCAATTCCCATGGATCATGGTACTGGACGGAGGTGGACTACGCAGGTAAAGGGCAGATGCAATGGGTGAAAAATAACTATATGATCTACAACTACTGCACCGACGCAAAGCGATTCCGCTTCGGGTTTGCTCCTGAATGTTACTTGACTGATCTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

281

Amino Acids

32.24

Weight (kDa)

5.17

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	34 - 213	7.7e-64	Glycosyl hydrolases family 16
XET_C	PF06955	231 - 274	1.6e-16	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016303)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09250
malus_domestica	MD13G1268400.v1.1
prunus_persica	Prupe.1G088500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402841 RchiOBHm_Chr4g0402851 RchiOBHm_Chr4g0402861
rosa_laevigata	RLG00000009045
rosa_multiflora	Rmu_sc0002451.1_g000049 Rmu_sc0008058.1_g000013
rosa_roxburghii	Rroxscaffold_5G00347580 Rroxscaffold_5G00347590
rosa_rugosa	Rorug04G0038700 Rorug04G0038800
rosa_samantha	Rh4AG116100
rosa_wichuraiana	Rw4G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	835
Acc36I	ACCTGC	1 cut(s)	716
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	585
AciI	CCGC	4 cut(s)	90, 267, 593, 799
AclWI	GGATC	2 cut(s)	425, 703
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	2 cut(s)	274, 704
AfiI	CCNNNNNNNGG	2 cut(s)	394, 585
AgsI	TTSAA	3 cut(s)	203, 520, 673
AjnI	CCWGG	2 cut(s)	336, 525
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
AluBI	AGCT	3 cut(s)	160, 250, 571
AluI	AGCT	3 cut(s)	160, 250, 571
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	2 cut(s)	425, 703
AlwNI	CAGNNNCTG	1 cut(s)	585
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	157, 409
ApoI	RAATTY	1 cut(s)	332
Asp718I	GGTACC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	636
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	760
AsuII	TTCGAA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	636
BanI	GGYRCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	169, 421
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	2 cut(s)	338, 527
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	1 cut(s)	841
BfuAI	ACCTGC	1 cut(s)	716
BisI	GCNGC	3 cut(s)	91, 158, 410
BlsI	GCNGC	3 cut(s)	92, 159, 411
Bme1390I	CCNGG	3 cut(s)	258, 338, 527
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	636
BmiI	GGNNCC	3 cut(s)	274, 307, 638
BmrFI	CCNGG	3 cut(s)	258, 338, 527
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	2 cut(s)	665, 729
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	478
BpmI	CTGGAG	3 cut(s)	548, 562, 641
Bpu14I	TTCGAA	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	5 cut(s)	75, 84, 337, 388, 691
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 585
Bse1I	ACTGG	6 cut(s)	193, 355, 579, 605, 624, 710
Bse3DI	GCAATG	1 cut(s)	749
BseBI	CCWGG	2 cut(s)	338, 527
BseDI	CCNNGG	5 cut(s)	75, 84, 337, 388, 691
BseLI	CCNNNNNNNGG	2 cut(s)	394, 585
BseMI	GCAATG	1 cut(s)	749
BseNI	ACTGG	6 cut(s)	193, 355, 579, 605, 624, 710
BseXI	GCAGC	2 cut(s)	169, 421
BsgI	GTGCAG	1 cut(s)	763
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	394, 585
BsmAI	GTCTC	1 cut(s)	587
BsmI	GAATGC	3 cut(s)	139, 501, 595
BsnI	GGCC	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	430, 695, 765, 832
Bsp19I	CCATGG	2 cut(s)	75, 691
BspACI	CCGC	4 cut(s)	90, 267, 593, 799
BspANI	GGCC	1 cut(s)	41
BspHI	TCATGA	2 cut(s)	60, 313
BspLI	GGNNCC	3 cut(s)	274, 307, 638
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	2 cut(s)	425, 703
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	749
BsrI	ACTGG	6 cut(s)	193, 355, 579, 605, 624, 710
BssECI	CCNNGG	5 cut(s)	75, 84, 337, 388, 691
BssMI	GATC	4 cut(s)	430, 695, 765, 832
BssT1I	CCWWGG	4 cut(s)	75, 84, 388, 691
Bst2UI	CCWGG	2 cut(s)	338, 527
Bst4CI	ACNGT	2 cut(s)	277, 516
Bst6I	CTCTTC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	330
BstDSI	CCRYGG	2 cut(s)	75, 691
BstKTI	GATC	4 cut(s)	433, 698, 768, 835
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	4 cut(s)	430, 695, 765, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 568
BstNI	CCWGG	2 cut(s)	338, 527
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	256, 336, 525
BstV1I	GCAGC	2 cut(s)	169, 421
BstV2I	GAAGAC	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	2 cut(s)	75, 691
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	716
CaiI	CAGNNNCTG	1 cut(s)	585
CciI	TCATGA	2 cut(s)	60, 313
Cfr13I	GGNCC	1 cut(s)	636
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	2 cut(s)	273, 703
CviAII	CATG	7 cut(s)	61, 76, 120, 238, 314, 692, 699
CviQI	GTAC	2 cut(s)	273, 703
DpnI	GATC	4 cut(s)	432, 697, 767, 834
DpnII	GATC	4 cut(s)	430, 695, 765, 832
DrdI	GACNNNNNNGTC	1 cut(s)	835
DseDI	GACNNNNNNGTC	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	4 cut(s)	75, 84, 388, 691
Eco47I	GGWCC	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	336, 525
EcoT14I	CCWWGG	4 cut(s)	75, 84, 388, 691
ErhI	CCWWGG	4 cut(s)	75, 84, 388, 691
FaeI	CATG	7 cut(s)	64, 79, 123, 241, 317, 695, 702
FatI	CATG	7 cut(s)	60, 75, 119, 237, 313, 691, 698
Fnu4HI	GCNGC	3 cut(s)	91, 158, 410
Fsp4HI	GCNGC	3 cut(s)	91, 158, 410
FspBI	CTAG	1 cut(s)	841
GluI	GCNGC	3 cut(s)	91, 158, 410
GsuI	CTGGAG	3 cut(s)	548, 562, 641
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	794
Hin1II	CATG	7 cut(s)	64, 79, 123, 241, 317, 695, 702
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	6 cut(s)	166, 203, 469, 530, 680, 795
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	2 cut(s)	617, 718
Hpy188III	TCNNGA	6 cut(s)	61, 163, 314, 520, 586, 815
Hpy8I	GTNNAC	2 cut(s)	617, 718
Hpy99I	CGWCG	1 cut(s)	788
HpyCH4III	ACNGT	2 cut(s)	277, 516
HpyCH4V	TGCA	4 cut(s)	241, 656, 742, 780
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 568
Hsp92II	CATG	7 cut(s)	64, 79, 123, 241, 317, 695, 702
KpnI	GGTACC	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	430, 695, 765, 832
LmnI	GCTCC	2 cut(s)	305, 817
Lsp1109I	GCAGC	2 cut(s)	169, 421
LweI	GCATC	2 cut(s)	665, 729
MaeI	CTAG	1 cut(s)	841
MaeIII	GTNAC	4 cut(s)	184, 277, 346, 821
MalI	GATC	4 cut(s)	432, 697, 767, 834
MboI	GATC	4 cut(s)	430, 695, 765, 832
MboII	GAAGA	9 cut(s)	9, 12, 15, 18, 49, 116, 359, 478, 637
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	3 cut(s)	332, 413, 685
MlyI	GAGTC	2 cut(s)	160, 539
MnlI	CCTC	5 cut(s)	65, 185, 307, 605, 706
MslI	CAYNNNNRTG	2 cut(s)	74, 375
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	3 cut(s)	258, 338, 527
Mva1269I	GAATGC	3 cut(s)	139, 501, 595
MvaI	CCWGG	2 cut(s)	338, 527
MwoI	GCNNNNNNNGC	2 cut(s)	247, 568
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	2 cut(s)	75, 691
NdeII	GATC	4 cut(s)	430, 695, 765, 832
NlaIII	CATG	7 cut(s)	64, 79, 123, 241, 317, 695, 702
NlaIV	GGNNCC	3 cut(s)	274, 307, 638
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	2 cut(s)	184, 277
NspI	RCATGY	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	330
PagI	TCATGA	2 cut(s)	60, 313
PctI	GAATGC	3 cut(s)	139, 501, 595
PfeI	GAWTC	4 cut(s)	203, 469, 680, 795
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	585
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	92, 159, 411
PleI	GAGTC	2 cut(s)	160, 538
PpsI	GAGTC	2 cut(s)	160, 538
Psp6I	CCWGG	2 cut(s)	336, 525
PspGI	CCWGG	2 cut(s)	336, 525
PspN4I	GGNNCC	3 cut(s)	274, 307, 638
PspPI	GGNCC	1 cut(s)	636
PstNI	CAGNNNCTG	1 cut(s)	585
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	274, 704
RsaNI	GTAC	2 cut(s)	273, 703
RseI	CAYNNNNRTG	2 cut(s)	74, 375
SatI	GCNGC	3 cut(s)	91, 158, 410
Sau3AI	GATC	4 cut(s)	430, 695, 765, 832
Sau96I	GGNCC	1 cut(s)	636
SchI	GAGTC	2 cut(s)	160, 539
ScrFI	CCNGG	3 cut(s)	258, 338, 527
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	9 cut(s)	162, 252, 423, 455, 528, 573, 616, 717, 730
SfaNI	GCATC	2 cut(s)	665, 729
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	74, 375
Sse9I	AATT	3 cut(s)	332, 413, 685
SsiI	CCGC	4 cut(s)	90, 267, 593, 799
SspMI	CTAG	1 cut(s)	841
StyD4I	CCNGG	3 cut(s)	256, 336, 525
StyI	CCWWGG	4 cut(s)	75, 84, 388, 691
TaaI	ACNGT	2 cut(s)	277, 516
TaqI	TCGA	3 cut(s)	147, 177, 330
TasI	AATT	3 cut(s)	332, 413, 685
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	4 cut(s)	203, 469, 680, 795
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	184, 277
TseI	GCWGC	2 cut(s)	157, 409
Tsp45I	GTSAC	2 cut(s)	184, 277
TspDTI	ATGAA	5 cut(s)	37, 49, 117, 534, 581
TspGWI	ACGGA	1 cut(s)	725
TspRI	CASTG	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	636
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.