Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016303

Physical Location & Seq

Genomic Coordinates Reverse (-)

35332957 .. 35334945

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1268400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTTTCTGCTTATTATTCTTCCAATGTTTCAGCAGCATTATTGTTGATTTTTATTTTCATGATCAACACTTCCACGGTTACCTTTGCTGGCAAGTTTTACCAAGATTTCTACATAACATGGGGAGGGGACTATCATGCAAAGATGCTCAACAACGGGGACCTCCTTGCTCTCTCTCTTGACAATGTCAGTGGCTCAGCTTTTGAGTCATATAATCAATACCTATATGCAAAGATTGATATACGGATCAAGCTTGTTGCTGGAAACTCTGCTGGCACTGTCACTACCTTCTATTTATCATCAACTGGGTCATCCCATGACGAGATAGACTTTGAATTCTTGGGGAATGTTACTGGTGAGCCTTACATTCTTCATACTAATGTGTTCTGCCAAGGCAAGGGTAACAGAGAGCAGCAATTCTATCTTTGGTTTGACCCCACTGCTGATTTCCACACCTATTCTCTACTTTGGAATCCCCAAAATGTTATATTCTTGGTTGATGACCTTCCAATTCGACAGTTCAAGAACCAGGAGTCGTTTGGTATTCCATTCCCCAAAAACCAGGCTATGAGATTATACTCCAGTCTCTGGAATGCTGATAACTGGGCCACAAGAGGTGGACTTGTAAAGATAGATTGGACACAATCGCCCTTCACTGCCTCCTACATGAACTTCAATGCCGATGCTTGCATCTGCTCTTATGGCACTTCTTCTTGCGATTCAAAATCAAATAAAGGATCATGGTACTGGAAGACTCTTAACATTGCGGATCAAGGGAGGATGCAATGGGTGCAAAAGAATTATATGATCTACAACTACTGCACAGACGTAAAGCGATTCCCTCAAGGATTTGCCCCAGAATGCTATCTTACCATTTTTCCCTACAGGGGTCACAGCGCAGCTCATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

304

Amino Acids

34.59

Weight (kDa)

6.05

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	34 - 214	1e-62	Glycosyl hydrolases family 16
XET_C	PF06955	244 - 288	8.7e-20	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016303)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09250
malus_domestica	MD13G1268400.v1.1
prunus_persica	Prupe.1G088500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402841 RchiOBHm_Chr4g0402851 RchiOBHm_Chr4g0402861
rosa_laevigata	RLG00000009045
rosa_multiflora	Rmu_sc0002451.1_g000049 Rmu_sc0008058.1_g000013
rosa_roxburghii	Rroxscaffold_5G00347580 Rroxscaffold_5G00347590
rosa_rugosa	Rorug04G0038700 Rorug04G0038800
rosa_samantha	Rh4AG116100
rosa_wichuraiana	Rw4G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	588
AciI	CCGC	1 cut(s)	767
AclWI	GGATC	3 cut(s)	254, 745, 777
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	3 cut(s)	397, 588, 887
AgsI	TTSAA	4 cut(s)	335, 523, 676, 723
AjnI	CCWGG	2 cut(s)	528, 561
AluBI	AGCT	3 cut(s)	200, 253, 902
AluI	AGCT	3 cut(s)	200, 253, 902
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	3 cut(s)	254, 745, 777
AlwNI	CAGNNNCTG	1 cut(s)	588
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	3 cut(s)	35, 412, 899
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	2 cut(s)	160, 606
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	758
BbvI	GCAGC	2 cut(s)	47, 424
BciT130I	CCWGG	2 cut(s)	530, 563
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	883
BisI	GCNGC	3 cut(s)	36, 413, 900
BlpI	GCTNAGC	1 cut(s)	196
BlsI	GCNGC	3 cut(s)	37, 414, 901
Bme1390I	CCNGG	2 cut(s)	530, 563
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 606
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	530, 563
BmrI	ACTGGG	2 cut(s)	315, 613
BmsI	GCATC	4 cut(s)	135, 673, 699, 771
BmuI	ACTGGG	2 cut(s)	315, 613
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	828
BsaJI	CCNNGG	2 cut(s)	75, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 588, 887
Bse1I	ACTGG	5 cut(s)	310, 358, 582, 608, 752
Bse3DI	GCAATG	2 cut(s)	762, 791
BseBI	CCWGG	2 cut(s)	530, 563
BseDI	CCNNGG	2 cut(s)	75, 391
BseGI	GGATG	2 cut(s)	311, 786
BseLI	CCNNNNNNNGG	3 cut(s)	397, 588, 887
BseMI	GCAATG	2 cut(s)	762, 791
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	5 cut(s)	310, 358, 582, 608, 752
BseXI	GCAGC	2 cut(s)	47, 424
BsgI	GTGCAG	1 cut(s)	805
BshFI	GGCC	1 cut(s)	608
BslFI	GGGAC	2 cut(s)	143, 173
BslI	CCNNNNNNNGG	3 cut(s)	397, 588, 887
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	2 cut(s)	143, 173
BsmI	GAATGC	2 cut(s)	598, 866
BsnI	GGCC	1 cut(s)	608
Bsp143I	GATC	5 cut(s)	63, 246, 737, 769, 807
Bsp1720I	GCTNAGC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	767
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	3 cut(s)	254, 745, 777
BsrDI	GCAATG	2 cut(s)	762, 791
BsrI	ACTGG	5 cut(s)	310, 358, 582, 608, 752
BssECI	CCNNGG	2 cut(s)	75, 391
BssMI	GATC	5 cut(s)	63, 246, 737, 769, 807
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	530, 563
Bst4CI	ACNGT	3 cut(s)	79, 280, 519
BstAPI	GCANNNNNTGC	1 cut(s)	790
BstC8I	GCNNGC	3 cut(s)	91, 274, 688
BstDEI	CTNAG	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	311, 786
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	5 cut(s)	66, 249, 740, 772, 810
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	5 cut(s)	63, 246, 737, 769, 807
BstMWI	GCNNNNNNNGC	2 cut(s)	702, 790
BstNI	CCWGG	2 cut(s)	530, 563
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	528, 561
BstSFI	CTRYAG	1 cut(s)	883
BstV1I	GCAGC	2 cut(s)	47, 424
BstV2I	GAAGAC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	608
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	311, 786
BtsI	GCAGTG	2 cut(s)	438, 654
BtsIMutI	CAGTG	4 cut(s)	196, 276, 438, 654
Cac8I	GCNNGC	3 cut(s)	91, 274, 688
CaiI	CAGNNNCTG	1 cut(s)	588
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	2 cut(s)	160, 606
Csp6I	GTAC	1 cut(s)	745
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	6 cut(s)	61, 120, 137, 317, 667, 741
CviJI	RGCY	7 cut(s)	195, 200, 253, 361, 566, 608, 902
CviKI_1	RGCY	7 cut(s)	195, 200, 253, 361, 566, 608, 902
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	5 cut(s)	65, 248, 739, 771, 809
DpnII	GATC	5 cut(s)	63, 246, 737, 769, 807
Eco130I	CCWWGG	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	528, 561
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	6 cut(s)	64, 123, 140, 320, 670, 744
FaqI	GGGAC	2 cut(s)	143, 173
FatI	CATG	6 cut(s)	60, 119, 136, 316, 666, 740
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	36, 413, 900
FokI	GGATG	2 cut(s)	298, 793
Fsp4HI	GCNGC	3 cut(s)	36, 413, 900
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	3 cut(s)	36, 413, 900
GsuI	CTGGAG	1 cut(s)	565
HaeIII	GGCC	1 cut(s)	608
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	6 cut(s)	64, 123, 140, 320, 670, 744
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	6 cut(s)	206, 472, 533, 719, 754, 837
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188III	TCNNGA	4 cut(s)	61, 179, 523, 589
Hpy8I	GTNNAC	1 cut(s)	620
HpyAV	CCTTC	3 cut(s)	298, 515, 661
HpyCH4III	ACNGT	3 cut(s)	79, 280, 519
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	6 cut(s)	140, 230, 690, 784, 793, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	702, 790
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	6 cut(s)	64, 123, 140, 320, 670, 744
HspAI	GCGC	1 cut(s)	897
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	63, 246, 737, 769, 807
Lsp1109I	GCAGC	2 cut(s)	47, 424
LweI	GCATC	4 cut(s)	135, 673, 699, 771
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	5 cut(s)	79, 280, 349, 401, 890
MalI	GATC	5 cut(s)	65, 248, 739, 771, 809
MboI	GATC	5 cut(s)	63, 246, 737, 769, 807
MboII	GAAGA	4 cut(s)	12, 362, 702, 763
MluCI	AATT	4 cut(s)	335, 416, 510, 799
MlyI	GAGTC	3 cut(s)	215, 542, 748
MnlI	CCTC	6 cut(s)	119, 173, 608, 670, 771, 852
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	530, 563
Mva1269I	GAATGC	2 cut(s)	598, 866
MvaI	CCWGG	2 cut(s)	530, 563
MwoI	GCNNNNNNNGC	2 cut(s)	702, 790
NdeII	GATC	5 cut(s)	63, 246, 737, 769, 807
NlaIII	CATG	6 cut(s)	64, 123, 140, 320, 670, 744
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	2 cut(s)	280, 890
PagI	TCATGA	1 cut(s)	60
PctI	GAATGC	2 cut(s)	598, 866
PfeI	GAWTC	3 cut(s)	472, 719, 837
PflFI	GACNNNGTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	37, 414, 901
PleI	GAGTC	3 cut(s)	214, 541, 748
PpsI	GAGTC	3 cut(s)	214, 541, 748
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	528, 561
PspEI	GGTNACC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	528, 561
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	160, 606
PspPPI	RGGWCCY	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	588
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	3 cut(s)	36, 413, 900
Sau3AI	GATC	5 cut(s)	63, 246, 737, 769, 807
Sau96I	GGNCC	2 cut(s)	160, 606
SchI	GAGTC	3 cut(s)	215, 542, 748
ScrFI	CCNGG	2 cut(s)	530, 563
SfaNI	GCATC	4 cut(s)	135, 673, 699, 771
SfcI	CTRYAG	1 cut(s)	883
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	843
SmoI	CTYRAG	1 cut(s)	843
Sse9I	AATT	4 cut(s)	335, 416, 510, 799
SsiI	CCGC	1 cut(s)	767
StyD4I	CCNGG	2 cut(s)	528, 561
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	3 cut(s)	79, 280, 519
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	1 cut(s)	514
TasI	AATT	4 cut(s)	335, 416, 510, 799
TfiI	GAWTC	3 cut(s)	472, 719, 837
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	4 cut(s)	196, 283, 445, 661
TseFI	GTSAC	2 cut(s)	280, 890
TseI	GCWGC	3 cut(s)	35, 412, 899
Tsp45I	GTSAC	2 cut(s)	280, 890
TspDTI	ATGAA	3 cut(s)	49, 362, 683
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	4 cut(s)	196, 283, 445, 661
Tth111I	GACNNNGTC	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.