RchiOBHm_Chr4g0402841

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016303
Physical Location & Seq
Reverse (-)
21720903 .. 21721925
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37461

Sequence Viewer

Length: 1023 bp
ATGGAAGGCCAGGTTCCAAAATCTCTAGCCAGCTGCACAAGTTTAGAAATTTTAAACCTTGGAAGCAATCAGATTAGCGATACCTTTCCATGCTTATTGATGAAAATATCCACCTTGAGTGTGCTTGTTTTGCGGTCCAACAAATTTCATGGAGGCATTGAATGTTCAGAGATCTATGGCACCTGGCAGAGGCTTCAAGTGATAGACCTAGCACACAACTTCTTCAGTGGTGGAATATCAGGAATATCTTTACCAAGTTCGCTGACAAAAATCTCTAACATATATTGGTCCGAATTTCGGCAACTCAACGATTTGCCACCAGAAACTATTGGTCATGAGTATTTTGACAAGTATTTCGAGGAAGCAATAACAGTTACCAGCAAAGGTTTAAACATGAAGCTGGTGAAAATTATGGCAGCCTTCACCTTGATTGACTTGTCATGCAACAAATTCAACGGGTCAATCCCAGAGTACAGTGAAATATACGAATCATTACAGGTGTTCAACTTGTCCAATAATGATTTCACAGGTGAAATCCCATCTTCATTTGGTGATATGCTTCAACTAGAATCCTTAGACCTCTCACAAAACCACTTGAGTGGGAAAATTCCACAAAAGCTTGCTGAACTTACTTTCCTTTCATTCCTGAATCTCTCCAATAATCAACTGGTCGGCAATATCCCAACCGGTCCGCAGTTTTCAACATTTTCAAAAGCCTCATTTTTAGGTAACAAAGGATTATGGGGTTTTCCTTTGGACAACATGGTAGTATTGTCTCCACCAAGATCACATGGAATCCCTCCAAAATCTGCACATAAGATTGACTGGGATCTTATCGATATTGAAATTGGATTTGTATTTGGGCTCGGAATAGCCATCGGGTCACTTTTCTTTTGCAAGAGATGGAGGAAATGGTATTACAGAGTTATGTATAACATTGTGCTTATGATATTCCCTCAGTTGGATCAAAGAATTGGTAATCATAGAAGACATGTTTACATTGCTCCAAGATGGAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

340

Amino Acids

38.49

Weight (kDa)

7.67

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 164 - 223 3.1e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016303)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09250
malus_domestica MD13G1268400.v1.1
prunus_persica Prupe.1G088500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402841 RchiOBHm_Chr4g0402851 RchiOBHm_Chr4g0402861
rosa_laevigata RLG00000009045
rosa_multiflora Rmu_sc0002451.1_g000049 Rmu_sc0008058.1_g000013
rosa_roxburghii Rroxscaffold_5G00347580 Rroxscaffold_5G00347590
rosa_rugosa Rorug04G0038700 Rorug04G0038800
rosa_samantha Rh4AG116100
rosa_wichuraiana Rw4G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 2 cut(s) 133, 692
AclWI GGATC 2 cut(s) 837, 972
AcsI RAATTY 5 cut(s) 48, 143, 293, 449, 606
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 3 cut(s) 189, 297, 961
AflIII ACRYGT 1 cut(s) 991
AgeI ACCGGT 1 cut(s) 686
AgsI TTSAA 8 cut(s) 161, 197, 454, 505, 563, 702, 711, 845
AjnI CCWGG 2 cut(s) 9, 182
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AleI CACNNNNGTG 1 cut(s) 597
AloI GAACNNNNNNTCC 2 cut(s) 618, 650
AluBI AGCT 3 cut(s) 33, 400, 619
AluI AGCT 3 cut(s) 33, 400, 619
Alw26I GTCTC 2 cut(s) 780, 1009
AlwI GGATC 2 cut(s) 837, 972
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 2 cut(s) 33, 416
ApoI RAATTY 5 cut(s) 48, 143, 293, 449, 606
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AsiGI ACCGGT 1 cut(s) 686
AspS9I GGNCC 3 cut(s) 135, 288, 689
AsuHPI GGTGA 4 cut(s) 415, 415, 542, 563
AvaII GGWCC 3 cut(s) 135, 288, 689
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 994
BbvI GCAGC 2 cut(s) 20, 428
BccI CCATC 4 cut(s) 547, 884, 897, 1005
BciT130I CCWGG 2 cut(s) 11, 184
BcoDI GTCTC 2 cut(s) 780, 1009
BfaI CTAG 3 cut(s) 26, 209, 566
BglII AGATCT 1 cut(s) 171
BisI GCNGC 2 cut(s) 34, 417
BlsI GCNGC 2 cut(s) 35, 418
Bme1390I CCNGG 2 cut(s) 11, 184
Bme18I GGWCC 3 cut(s) 135, 288, 689
BmgT120I GGNCC 3 cut(s) 135, 288, 689
BmiI GGNNCC 2 cut(s) 15, 181
BmrFI CCNGG 2 cut(s) 11, 184
BmrI ACTGGG 1 cut(s) 835
BmuI ACTGGG 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 994
BpuEI CTTGAG 2 cut(s) 136, 616
Bsa29I ATCGAT 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 686
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 297, 961
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 2 cut(s) 672, 830
Bse3DI GCAATG 1 cut(s) 999
BseBI CCWGG 2 cut(s) 11, 184
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 3 cut(s) 189, 297, 961
BseMI GCAATG 1 cut(s) 999
BseMII CTCAG 1 cut(s) 971
BseNI ACTGG 2 cut(s) 672, 830
BseXI GCAGC 2 cut(s) 20, 428
BsgI GTGCAG 2 cut(s) 19, 795
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 179
BshTI ACCGGT 1 cut(s) 686
BshVI ATCGAT 1 cut(s) 837
BsiSI CCGG 1 cut(s) 687
BslI CCNNNNNNNGG 3 cut(s) 189, 297, 961
BsmAI GTCTC 2 cut(s) 780, 1009
BsmBI CGTCTC 1 cut(s) 1009
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 867
Bsp143I GATC 4 cut(s) 171, 785, 829, 964
BspACI CCGC 2 cut(s) 133, 692
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 970
BspDI ATCGAT 1 cut(s) 837
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 15, 181
BspPI GGATC 2 cut(s) 837, 972
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 999
BsrFI RCCGGY 1 cut(s) 686
BsrI ACTGG 2 cut(s) 672, 830
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 4 cut(s) 171, 785, 829, 964
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 2 cut(s) 11, 184
Bst4CI ACNGT 2 cut(s) 373, 476
BstC8I GCNNGC 2 cut(s) 31, 621
BstDEI CTNAG 2 cut(s) 574, 957
BstENI CCTNNNNNAGG 1 cut(s) 187
BstKTI GATC 4 cut(s) 174, 788, 832, 967
BstMAI GTCTC 2 cut(s) 780, 1009
BstMBI GATC 4 cut(s) 171, 785, 829, 964
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 11, 184
BstNSI RCATGY 1 cut(s) 995
BstSCI CCNGG 2 cut(s) 9, 182
BstV1I GCAGC 2 cut(s) 20, 428
BstV2I GAAGAC 1 cut(s) 994
BstX2I RGATCY 2 cut(s) 171, 829
BstXI CCANNNNNNTGG 1 cut(s) 599
BstYI RGATCY 2 cut(s) 171, 829
Bsu15I ATCGAT 1 cut(s) 837
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 837
BtsIMutI CAGTG 2 cut(s) 232, 481
Cac8I GCNNGC 2 cut(s) 31, 621
CciI TCATGA 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 3 cut(s) 135, 288, 689
ClaI ATCGAT 1 cut(s) 837
CpoI CGGWCCG 1 cut(s) 689
Csp6I GTAC 1 cut(s) 472
CspAI ACCGGT 1 cut(s) 686
CspI CGGWCCG 1 cut(s) 689
CviAII CATG 8 cut(s) 90, 149, 335, 394, 441, 763, 791, 992
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 2 cut(s) 574, 957
DpnI GATC 4 cut(s) 173, 787, 831, 966
DpnII GATC 4 cut(s) 171, 785, 829, 964
DraI TTTAAA 2 cut(s) 54, 390
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 867
Eco47I GGWCC 3 cut(s) 135, 288, 689
Eco57I CTGAAG 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 9, 182
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 867
ErhI CCWWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 1009
FaeI CATG 8 cut(s) 93, 152, 338, 397, 444, 766, 794, 995
FatI CATG 8 cut(s) 89, 148, 334, 393, 440, 762, 790, 991
Fnu4HI GCNGC 2 cut(s) 34, 417
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 2 cut(s) 34, 417
FspBI CTAG 3 cut(s) 26, 209, 566
GluI GCNGC 2 cut(s) 34, 417
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 687
Hin1II CATG 8 cut(s) 93, 152, 338, 397, 444, 766, 794, 995
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 4 cut(s) 488, 569, 649, 795
HpaII CCGG 1 cut(s) 687
HphI GGTGA 4 cut(s) 415, 415, 542, 563
Hpy166II GTNNAC 1 cut(s) 997
Hpy188I TCNGA 4 cut(s) 72, 169, 292, 869
Hpy188III TCNNGA 3 cut(s) 240, 335, 646
Hpy8I GTNNAC 1 cut(s) 997
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 2 cut(s) 373, 476
HpyCH4IV ACGT 1 cut(s) 1018
HpyCH4V TGCA 4 cut(s) 36, 444, 812, 897
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 574, 957
HpySE526I ACGT 1 cut(s) 1018
Hsp92II CATG 8 cut(s) 93, 152, 338, 397, 444, 766, 794, 995
Kzo9I GATC 4 cut(s) 171, 785, 829, 964
LmnI GCTCC 1 cut(s) 1009
Lsp1109I GCAGC 2 cut(s) 20, 428
MaeI CTAG 3 cut(s) 26, 209, 566
MaeII ACGT 1 cut(s) 1018
MaeIII GTNAC 3 cut(s) 373, 728, 882
MalI GATC 4 cut(s) 173, 787, 831, 966
MboI GATC 4 cut(s) 171, 785, 829, 964
MboII GAAGA 3 cut(s) 214, 534, 999
MflI RGATCY 2 cut(s) 171, 829
MhlI GDGCHC 1 cut(s) 867
MluCI AATT 8 cut(s) 48, 143, 293, 408, 449, 606, 846, 972
MmeI TCCRAC 2 cut(s) 162, 942
MnlI CCTC 8 cut(s) 146, 183, 352, 590, 727, 810, 900, 966
MseI TTAA 2 cut(s) 53, 389
MslI CAYNNNNRTG 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 2 cut(s) 11, 184
MssI GTTTAAAC 1 cut(s) 390
MvaI CCWGG 2 cut(s) 11, 184
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 4 cut(s) 171, 785, 829, 964
NlaIII CATG 8 cut(s) 93, 152, 338, 397, 444, 766, 794, 995
NlaIV GGNNCC 2 cut(s) 15, 181
NmuCI GTSAC 1 cut(s) 882
NspI RCATGY 1 cut(s) 995
OliI CACNNNNGTG 1 cut(s) 597
PagI TCATGA 1 cut(s) 334
PciI ACATGT 1 cut(s) 991
PfeI GAWTC 4 cut(s) 488, 569, 649, 795
PinAI ACCGGT 1 cut(s) 686
PkrI GCNGC 2 cut(s) 35, 418
PmeI GTTTAAAC 1 cut(s) 390
PscI ACATGT 1 cut(s) 991
Psp6I CCWGG 2 cut(s) 9, 182
PspGI CCWGG 2 cut(s) 9, 182
PspN4I GGNNCC 2 cut(s) 15, 181
PspPI GGNCC 3 cut(s) 135, 288, 689
PsuI RGATCY 2 cut(s) 171, 829
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 597
Rsr2I CGGWCCG 1 cut(s) 689
RsrII CGGWCCG 1 cut(s) 689
SaqAI TTAA 2 cut(s) 53, 389
SatI GCNGC 2 cut(s) 34, 417
Sau3AI GATC 4 cut(s) 171, 785, 829, 964
Sau96I GGNCC 3 cut(s) 135, 288, 689
ScrFI CCNGG 2 cut(s) 11, 184
SduI GDGCHC 1 cut(s) 867
SinI GGWCC 3 cut(s) 135, 288, 689
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 2 cut(s) 115, 595
SmoI CTYRAG 2 cut(s) 115, 595
Sse9I AATT 8 cut(s) 48, 143, 293, 408, 449, 606, 846, 972
SsiI CCGC 2 cut(s) 133, 692
SspMI CTAG 3 cut(s) 26, 209, 566
StyD4I CCNGG 2 cut(s) 9, 182
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 373, 476
TaiI ACGT 1 cut(s) 1021
TaqI TCGA 2 cut(s) 357, 837
TasI AATT 8 cut(s) 48, 143, 293, 408, 449, 606, 846, 972
TatI WGTACW 1 cut(s) 471
TfiI GAWTC 4 cut(s) 488, 569, 649, 795
Tru1I TTAA 2 cut(s) 53, 389
Tru9I TTAA 2 cut(s) 53, 389
TscAI CASTG 2 cut(s) 232, 481
TseFI GTSAC 1 cut(s) 882
TseI GCWGC 2 cut(s) 33, 416
Tsp45I GTSAC 1 cut(s) 882
TspDTI ATGAA 5 cut(s) 116, 137, 410, 534, 630
TspRI CASTG 2 cut(s) 232, 481
VpaK11BI GGWCC 3 cut(s) 135, 288, 689
XagI CCTNNNNNAGG 1 cut(s) 187
XapI RAATTY 5 cut(s) 48, 143, 293, 449, 606
XceI RCATGY 1 cut(s) 995
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XspI CTAG 3 cut(s) 26, 209, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.