Rroxscaffold_5G00347580

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016303
Physical Location & Seq
Reverse (-)
19086851 .. 19097953
11103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347580.1

Sequence Viewer

Length: 3135 bp
ATGAAATCTTTGCTGTATCTTTTCTTATTCTCAATCACCATCTGTTTTTATATAATCCCTGCAATCCACAGCCAGTGTGAGGAAAACCAGCAACTATCATTGCTCCATCTGAAGAAAAGCCTTATATTTGATCCTTCTGTATCCTCCAAGCTTATATTCTGGAATTCAAGTGTTGACTGTTGTTCCTGGGTTGGTGTAACTTGCAGTACCAAGGGCCGTGTGGTTGGACTTGACATCAGCGGTGAATTTATCTCATCAAGCATTGACAGTTCAAGCAGTCTCTTCCATCTTCAACATCTTCAAAGCCTAAATTTGGCCTGCAATGACTTCAGTGGCTCTCAAATTCCAGCTGCAATCGGAAAGCTTACAAACTTGAAGTATCTAAATTTGTCGTCTGCGGAATTCTTCGGCCAAATTCCCATTGAGATTTCAAATTTGACAAGGTTGGTTATCCTTGACATAGCTGAAAATTTCTCTATTAAAGGTCCATTAAGACTTCAGCAACCAAATTTAAGCATGCTGGTTCAGAACCTCACACAGCTTACAGAGTTATATCTTGATGTCGTTCAAATATTAGCTGAGGGAATTGAGTGGTGCCAAGCCATAGCCTCCTCATTGCCAAACCTGAGGGTGTTGAGCTTATCTGATTGTGCGCTTTCAGGCCCTTTCCATGAGTCTCTTGCTGAGCTTCAGTCTATCTGTGGATTCTTTGCCAATTTTCCATACTTGACTTCCTTGAGTCTCTGTAATTCTCAGCTGCAGGGAACATTTCCGGATGAGATTCTTCAGGTACCTTCTCTTCAAGCTATTGATATAACCAATAATCTAGAACTTCATGGTTCTTTGCCACAGTTTTCCAAGAACAATTCTCTTCGGTCCCTAGCTGTAAGAGAAACGACTTTTTCTGGACTTTTGCCAGTGTCAATTGGAAATCTCAGGCAGCTGTCAACGATAGACATTTCTGGTTGTGATTTCACTGGATCAATCCCAAGGTCAGTTGGGAACCTAACACAATTAGTTCAGTTGAAAATGTCAGGAAACAAATTTGATGGTCCAATTGATTCTATTCACTGGGAAAGCCTTATAAATCTGCTATATCTTGCTTTGGACTCTAATTTACTCAATGGGAGAATTCCAGCATCTATCTTTTCTCCTCCCTTGTTGGAGGAACTACTACTTTCCCACAATCAATTCTCAGGTCAAGTTCCAAAAATTTCCAATATCTCTTCGAAATCACTGAACAACCTTGATTTGAGTAGCAACAATTTGGAAGGACCAATATCTGCTTCTCTCCTATATTTGCGAGGGCTTCGACAACTTAATCTTTCTTCAAACAATTTCAGTGGTTTTCCTTTCATTGGCCCTCAACAGCTCGAAAATGTTAAAGACATTGATCTTTCGCACAATAGCTTATTGATTTGTTCAAATCCAAGAACAACAGAAAACTCACCGATCATTTCCTTCCACCACAGGCCATCAAACAACACCGGACAACCTCCGGTAGATTCGTCTCGGCCTTGCGAAGCCACCGTGGCAGTCTTGGGTCACGGCTCGCCCAGAACGGCGGCGAAGGGATCGAGTTCGTACGGCCCCGATCGGGTTCCAAGTATGGTGACTCGAGCTACCGCCACGAAACCTTCCCAAACTTCATCCACAAGTTCGCCTCGACCTTCTCGAAGCTCCCGTAACCACCCTTGCACGGCGGCGCCGTCTCCGGAAGCGGCCGGAACTCGAACCCGTTGCACCCGAAACCTTCGATCAGGGACAGAGATAGATATGTACAATGAGACCGCCGATACGAAAGGGATACTGCAAGCACAACCCCGGGAAATGGTGAAGGTATGGGCTGAGAAAGAAAAGAGGAATCTGGACAGAAATAAGTTATATGGGACAATTCCAGAATCCATATGCAACATCTCGTCATATCTTGAGGTTCTTGATCTATCCCATAATTCTCTAAGTGGCTTAGTTCCCGAATGCTTGACTACAATGGGCATTTCCAGTGTACTTAATTTAAGGGGAAACAACCTCACTGGCACTATTCCTGATACATTTCTTGAAGATTGTAGTTTAAAAACGCTGGAGCTAAGTGAAAATCAGATGGAAGGCCAGGTTCCAAAATCTCTAGCCAGCTGCACAAGTTTAGAGATTTTAAACCTTGGAAACAATCAGATTAGCGATACCTTTCCATGTTTATTGATGAAAGTATCCACCTTGAGTGTGCTTGTTTTGCGGTCCAACAAATTTCATGGAGGCATTGAATGTTCAGAGATCTATGGCACCTGGCAGAGGCTTCAAATACCCACCAAGACAGTAGAATTTCCCCACAACTTCTTCAGTGGTGGAATATCAGGAATTTCTTTACCAAGTCCGCCGACAAAAATCTATAACATATACAGGTCCGAATTTCGGCAACTCAACAATTTGCCACCAGAAACTATTGGTCATGAGTATTCTGAAAAGTATTTCGTGGATGCAATAACATTTACCAGCAAAGGTTTAGACATGAAGCTGGTGAAAATTATGGCTGCCTTCACCTTGATTGACTTTTCATGCAACAAATTCAACGGGTCAATGCCAGAGTACAATGAAATATACGAATCATTACATGTGTTCAACTTGTCCAATAATGATTTCACAGGTGAAATCCCATCTTCATTTGGTTATATGCTTCAACTTGAATCCTTAGACCTCTCACAAAACCACTTGAGTGGGAAAATTCCACAAGAGCTTGCTGAACTTACTTTCCTTTCATTCCTGAATCTCTCCAATAATCAACTGGTCGGCAAGATTCCAACCGGTCCGCAGTTTTCAACATTTTCAAAAGCCTCATTTTTCGGTAACAAAGGATTATGGGGTTTTCCTTTGGACAACATGGTAGTATTGTCTCCACCAAGATCACATGGAATCCCTCCAAAATCTGCACATAAAATTGACTGGGATCTTATCAATATTGAAATTGGATTTGTATTTGGGCTCGGAATTGCCATCGGGTCACTTTTCTTTTGCAAGAGATGGAGGAAATGGTATTACAAAGTTATGTATAACATTGTGCTTATGATATTCCCTCAGCTGGATCAAAGAATTGGTAATCATAGAAGACATGTTTACATTGCTCCAAGATGGAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1044

Amino Acids

115.52

Weight (kDa)

6.65

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 69 2.6e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 84 - 197 2.5e-08 Leucine-rich repeat region
LRR_14 PF23598 204 - 467 1.4e-10 Leucine-rich repeat region
LRR_8 PF13855 669 - 725 1.3e-07 Leucine rich repeat
LRR_4 PF12799 690 - 727 6.8e-07 Leucine Rich repeats (2 copies)
LRR_8 PF13855 868 - 927 1.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016303)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09250
malus_domestica MD13G1268400.v1.1
prunus_persica Prupe.1G088500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402841 RchiOBHm_Chr4g0402851 RchiOBHm_Chr4g0402861
rosa_laevigata RLG00000009045
rosa_multiflora Rmu_sc0002451.1_g000049 Rmu_sc0008058.1_g000013
rosa_roxburghii Rroxscaffold_5G00347580 Rroxscaffold_5G00347590
rosa_rugosa Rorug04G0038700 Rorug04G0038800
rosa_samantha Rh4AG116100
rosa_wichuraiana Rw4G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1085
Acc65I GGTACC 1 cut(s) 790
AccB1I GGYRCC 4 cut(s) 594, 790, 1705, 2279
AccIII TCCGGA 2 cut(s) 772, 1714
AclWI GGATC 5 cut(s) 125, 988, 1582, 2949, 3084
AcoI YGGCCR 2 cut(s) 409, 1722
AcuI CTGAAG 6 cut(s) 131, 313, 482, 674, 770, 2320
AcyI GRCGYC 1 cut(s) 1706
AfaI GTAC 6 cut(s) 208, 792, 1586, 1781, 2007, 2585
AfiI CCNNNNNNNGG 9 cut(s) 79, 313, 1358, 1597, 1699, 1831, 2289, 2409, 3073
AflIII ACRYGT 2 cut(s) 2608, 3103
AgeI ACCGGT 1 cut(s) 2798
AjnI CCWGG 3 cut(s) 185, 2109, 2282
AjuI GAANNNNNNNTTGG 6 cut(s) 140, 172, 1270, 1302, 2618, 2650
AleI CACNNNNGTG 1 cut(s) 2709
AloI GAACNNNNNNTCC 2 cut(s) 2730, 2762
Alw26I GTCTC 8 cut(s) 284, 681, 746, 1515, 1716, 1781, 2892, 3121
AlwI GGATC 5 cut(s) 125, 988, 1582, 2949, 3084
Ama87I CYCGRG 2 cut(s) 1617, 1824
Aor13HI TCCGGA 2 cut(s) 772, 1714
ApeKI GCWGC 5 cut(s) 350, 757, 940, 2133, 2528
AsiGI ACCGGT 1 cut(s) 2798
Asp718I GGTACC 1 cut(s) 790
AspLEI GCGC 2 cut(s) 655, 1708
AsuC2I CCSGG 2 cut(s) 1825, 1826
AsuHPI GGTGA 8 cut(s) 28, 254, 1440, 1624, 1846, 2527, 2527, 2654
AsuII TTCGAA 1 cut(s) 1229
AvaI CYCGRG 2 cut(s) 1617, 1824
AvaII GGWCC 7 cut(s) 485, 876, 1052, 1274, 2235, 2400, 2801
AxyI CCTNAGG 1 cut(s) 626
BanI GGYRCC 4 cut(s) 594, 790, 1705, 2279
BanII GRGCYC 1 cut(s) 2979
BarI GAAGNNNNNNTAC 2 cut(s) 783, 815
BbsI GAAGAC 1 cut(s) 3106
BbvCI CCTCAGC 2 cut(s) 579, 3069
BbvI GCAGC 5 cut(s) 337, 744, 952, 2120, 2515
BceAI ACGGC 6 cut(s) 201, 1564, 1578, 1603, 1693, 1716
BcgI CGANNNNNNTGC 2 cut(s) 1722, 1756
BciT130I CCWGG 3 cut(s) 187, 2111, 2284
BciVI GTATCC 3 cut(s) 151, 1800, 2218
BcnI CCSGG 2 cut(s) 1825, 1826
BcoDI GTCTC 8 cut(s) 284, 681, 746, 1515, 1716, 1781, 2892, 3121
BfaI CTAG 3 cut(s) 827, 881, 2126
BfmI CTRYAG 1 cut(s) 758
BfoI RGCGCY 1 cut(s) 1709
BfuI GTATCC 3 cut(s) 151, 1800, 2218
BglI GCCNNNNNGGC 1 cut(s) 1532
BglII AGATCT 1 cut(s) 2271
BisI GCNGC 8 cut(s) 351, 758, 941, 1566, 1704, 1722, 2134, 2529
BlpI GCTNAGC 1 cut(s) 684
BlsI GCNGC 8 cut(s) 352, 759, 942, 1567, 1705, 1723, 2135, 2530
Bme1390I CCNGG 5 cut(s) 187, 1825, 1826, 2111, 2284
Bme18I GGWCC 7 cut(s) 485, 876, 1052, 1274, 2235, 2400, 2801
BmeT110I CYCGRG 2 cut(s) 1617, 1824
BmiI GGNNCC 9 cut(s) 596, 792, 878, 1004, 1591, 1602, 1707, 2115, 2281
BmrFI CCNGG 5 cut(s) 187, 1825, 1826, 2111, 2284
BmrI ACTGGG 2 cut(s) 1081, 2947
BmsI GCATC 2 cut(s) 1148, 2464
BmuI ACTGGG 2 cut(s) 1081, 2947
BpiI GAAGAC 1 cut(s) 3106
BpmI CTGGAG 1 cut(s) 2102
Bpu10I CCTNAGC 2 cut(s) 579, 3069
Bpu1102I GCTNAGC 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 1229
BpuEI CTTGAG 4 cut(s) 757, 1949, 2236, 2728
BpuMI CCSGG 2 cut(s) 1825, 1826
BsaHI GRCGYC 1 cut(s) 1706
BsaI GGTCTC 1 cut(s) 1781
BsaJI CCNNGG 7 cut(s) 186, 210, 989, 1530, 1823, 1824, 2158
BsaWI WCCGGW 5 cut(s) 772, 1487, 1498, 1714, 2798
Bsc4I CCNNNNNNNGG 9 cut(s) 79, 313, 1358, 1597, 1699, 1831, 2289, 2409, 3073
Bse118I RCCGGY 1 cut(s) 2798
Bse1I ACTGG 8 cut(s) 73, 917, 982, 1076, 2001, 2038, 2784, 2942
Bse21I CCTNAGG 1 cut(s) 626
Bse3DI GCAATG 4 cut(s) 98, 328, 614, 3111
BseAI TCCGGA 2 cut(s) 772, 1714
BseBI CCWGG 3 cut(s) 187, 2111, 2284
BseDI CCNNGG 7 cut(s) 186, 210, 989, 1530, 1823, 1824, 2158
BseGI GGATG 3 cut(s) 781, 1649, 2479
BseLI CCNNNNNNNGG 9 cut(s) 79, 313, 1358, 1597, 1699, 1831, 2289, 2409, 3073
BseMI GCAATG 4 cut(s) 98, 328, 614, 3111
BseMII CTCAG 8 cut(s) 570, 617, 675, 767, 949, 1209, 1839, 3083
BseNI ACTGG 8 cut(s) 73, 917, 982, 1076, 2001, 2038, 2784, 2942
BseRI GAGGAG 2 cut(s) 601, 1143
BseX3I CGGCCG 1 cut(s) 1722
BseXI GCAGC 5 cut(s) 337, 744, 952, 2120, 2515
BsgI GTGCAG 2 cut(s) 2119, 2907
Bsh1285I CGRYCG 2 cut(s) 1597, 1725
BshNI GGYRCC 4 cut(s) 594, 790, 1705, 2279
BshTI ACCGGT 1 cut(s) 2798
BsiEI CGRYCG 2 cut(s) 1597, 1725
BsiHKCI CYCGRG 2 cut(s) 1617, 1824
BsiSI CCGG 7 cut(s) 773, 1488, 1499, 1715, 1725, 1825, 2799
BsiWI CGTACG 1 cut(s) 1584
BslFI GGGAC 3 cut(s) 862, 1777, 1903
BslI CCNNNNNNNGG 9 cut(s) 79, 313, 1358, 1597, 1699, 1831, 2289, 2409, 3073
BsmAI GTCTC 8 cut(s) 284, 681, 746, 1515, 1716, 1781, 2892, 3121
BsmBI CGTCTC 3 cut(s) 1515, 1716, 3121
BsmFI GGGAC 3 cut(s) 862, 1777, 1903
BsmI GAATGC 1 cut(s) 1982
Bso31I GGTCTC 1 cut(s) 1781
BsoBI CYCGRG 2 cut(s) 1617, 1824
Bsp119I TTCGAA 1 cut(s) 1229
Bsp1286I GDGCHC 1 cut(s) 2979
Bsp13I TCCGGA 2 cut(s) 772, 1714
Bsp1407I TGTACA 1 cut(s) 1779
Bsp1720I GCTNAGC 1 cut(s) 684
BspCNI CTCAG 8 cut(s) 571, 618, 676, 766, 948, 1208, 1840, 3082
BspEI TCCGGA 2 cut(s) 772, 1714
BspHI TCATGA 1 cut(s) 2446
BspLI GGNNCC 9 cut(s) 596, 792, 878, 1004, 1591, 1602, 1707, 2115, 2281
BspMAI CTGCAG 1 cut(s) 762
BspPI GGATC 5 cut(s) 125, 988, 1582, 2949, 3084
BspT104I TTCGAA 1 cut(s) 1229
BspT107I GGYRCC 4 cut(s) 594, 790, 1705, 2279
BspTNI GGTCTC 1 cut(s) 1781
BsrDI GCAATG 4 cut(s) 98, 328, 614, 3111
BsrFI RCCGGY 1 cut(s) 2798
BsrGI TGTACA 1 cut(s) 1779
BsrI ACTGG 8 cut(s) 73, 917, 982, 1076, 2001, 2038, 2784, 2942
BssAI RCCGGY 1 cut(s) 2798
BssECI CCNNGG 7 cut(s) 186, 210, 989, 1530, 1823, 1824, 2158
BssNI GRCGYC 1 cut(s) 1706
BssT1I CCWWGG 3 cut(s) 210, 989, 2158
Bst2UI CCWGG 3 cut(s) 187, 2111, 2284
Bst4CI ACNGT 5 cut(s) 179, 269, 852, 1531, 2314
Bst6I CTCTTC 4 cut(s) 287, 804, 876, 1231
BstACI GRCGYC 1 cut(s) 1706
BstAUI TGTACA 1 cut(s) 1779
BstBI TTCGAA 1 cut(s) 1229
BstC8I GCNNGC 6 cut(s) 319, 518, 1553, 1815, 2131, 2733
BstDSI CCRYGG 1 cut(s) 1530
BstENI CCTNNNNNAGG 1 cut(s) 2287
BstF5I GGATG 3 cut(s) 781, 1649, 2479
BstH2I RGCGCY 1 cut(s) 1709
BstHHI GCGC 2 cut(s) 655, 1708
BstMAI GTCTC 8 cut(s) 284, 681, 746, 1515, 1716, 1781, 2892, 3121
BstMCI CGRYCG 2 cut(s) 1597, 1725
BstMWI GCNNNNNNNGC 2 cut(s) 1532, 2230
BstNI CCWGG 3 cut(s) 187, 2111, 2284
BstNSI RCATGY 3 cut(s) 520, 2612, 3107
BstSCI CCNGG 5 cut(s) 185, 1823, 1824, 2109, 2282
BstSFI CTRYAG 1 cut(s) 758
BstV1I GCAGC 5 cut(s) 337, 744, 952, 2120, 2515
BstV2I GAAGAC 1 cut(s) 3106
BstX2I RGATCY 2 cut(s) 2271, 2941
BstXI CCANNNNNNTGG 1 cut(s) 2711
BstYI RGATCY 2 cut(s) 2271, 2941
BstZI CGGCCG 1 cut(s) 1722
Bsu36I CCTNAGG 1 cut(s) 626
BsuI GTATCC 3 cut(s) 151, 1800, 2218
BtgI CCRYGG 1 cut(s) 1530
BtsCI GGATG 3 cut(s) 781, 1649, 2479
Cac8I GCNNGC 6 cut(s) 319, 518, 1553, 1815, 2131, 2733
CciI TCATGA 1 cut(s) 2446
CfoI GCGC 2 cut(s) 655, 1708
Cfr10I RCCGGY 1 cut(s) 2798
Cfr9I CCCGGG 1 cut(s) 1824
CpoI CGGWCCG 1 cut(s) 2801
Csp6I GTAC 6 cut(s) 207, 791, 1585, 1780, 2006, 2584
CspAI ACCGGT 1 cut(s) 2798
CspCI CAANNNNNGTGG 2 cut(s) 1324, 1359
CspI CGGWCCG 1 cut(s) 2801
CviQI GTAC 6 cut(s) 207, 791, 1585, 1780, 2006, 2584
DinI GGCGCC 1 cut(s) 1707
DraI TTTAAA 2 cut(s) 2073, 2154
EaeI YGGCCR 2 cut(s) 409, 1722
EagI CGGCCG 1 cut(s) 1722
Eam1104I CTCTTC 4 cut(s) 287, 804, 876, 1231
EarI CTCTTC 4 cut(s) 287, 804, 876, 1231
EciI GGCGGA 1 cut(s) 2361
EclXI CGGCCG 1 cut(s) 1722
Eco130I CCWWGG 3 cut(s) 210, 989, 2158
Eco24I GRGCYC 1 cut(s) 2979
Eco31I GGTCTC 1 cut(s) 1781
Eco47I GGWCC 7 cut(s) 485, 876, 1052, 1274, 2235, 2400, 2801
Eco52I CGGCCG 1 cut(s) 1722
Eco57I CTGAAG 6 cut(s) 131, 313, 482, 674, 770, 2320
Eco81I CCTNAGG 1 cut(s) 626
Eco88I CYCGRG 2 cut(s) 1617, 1824
EcoNI CCTNNNNNAGG 1 cut(s) 2287
EcoO109I RGGNCCY 1 cut(s) 662
EcoRI GAATTC 3 cut(s) 163, 401, 1131
EcoRII CCWGG 3 cut(s) 185, 2109, 2282
EcoT14I CCWWGG 3 cut(s) 210, 989, 2158
EcoT38I GRGCYC 1 cut(s) 2979
EgeI GGCGCC 1 cut(s) 1707
EheI GGCGCC 1 cut(s) 1707
ErhI CCWWGG 3 cut(s) 210, 989, 2158
Esp3I CGTCTC 3 cut(s) 1515, 1716, 3121
FaqI GGGAC 3 cut(s) 862, 1777, 1903
FauNDI CATATG 1 cut(s) 1907
Fnu4HI GCNGC 8 cut(s) 351, 758, 941, 1566, 1704, 1722, 2134, 2529
FokI GGATG 3 cut(s) 788, 1636, 2486
FriOI GRGCYC 1 cut(s) 2979
Fsp4HI GCNGC 8 cut(s) 351, 758, 941, 1566, 1704, 1722, 2134, 2529
FspBI CTAG 3 cut(s) 827, 881, 2126
GlaI GCGC 2 cut(s) 654, 1707
GluI GCNGC 8 cut(s) 351, 758, 941, 1566, 1704, 1722, 2134, 2529
GsuI CTGGAG 1 cut(s) 2102
HaeII RGCGCY 1 cut(s) 1709
HapII CCGG 7 cut(s) 773, 1488, 1499, 1715, 1725, 1825, 2799
HhaI GCGC 2 cut(s) 655, 1708
Hin1I GRCGYC 1 cut(s) 1706
Hin6I GCGC 2 cut(s) 653, 1706
HinP1I GCGC 2 cut(s) 653, 1706
HincII GTYRAC 2 cut(s) 175, 948
HindII GTYRAC 2 cut(s) 175, 948
HindIII AAGCTT 2 cut(s) 149, 362
HpaII CCGG 7 cut(s) 773, 1488, 1499, 1715, 1725, 1825, 2799
HphI GGTGA 8 cut(s) 28, 254, 1440, 1624, 1846, 2527, 2527, 2654
Hpy166II GTNNAC 4 cut(s) 175, 948, 2006, 3109
Hpy8I GTNNAC 4 cut(s) 175, 948, 2006, 3109
HpyCH4III ACNGT 5 cut(s) 179, 269, 852, 1531, 2314
HpyCH4IV ACGT 1 cut(s) 3130
HpyF10VI GCNNNNNNNGC 2 cut(s) 1532, 2230
HpySE526I ACGT 1 cut(s) 3130
Hsp92I GRCGYC 1 cut(s) 1706
HspAI GCGC 2 cut(s) 653, 1706
KasI GGCGCC 1 cut(s) 1705
Kpn2I TCCGGA 2 cut(s) 772, 1714
KpnI GGTACC 1 cut(s) 794
LmnI GCTCC 4 cut(s) 108, 1685, 2083, 3121
Lsp1109I GCAGC 5 cut(s) 337, 744, 952, 2120, 2515
LweI GCATC 2 cut(s) 1148, 2464
MaeI CTAG 3 cut(s) 827, 881, 2126
MaeII ACGT 1 cut(s) 3130
MaeIII GTNAC 6 cut(s) 196, 1544, 1612, 1685, 2840, 2994
MfeI CAATTG 2 cut(s) 924, 1056
MflI RGATCY 2 cut(s) 2271, 2941
MhlI GDGCHC 1 cut(s) 2979
Mly113I GGCGCC 1 cut(s) 1706
MlyI GAGTC 4 cut(s) 683, 748, 1103, 1609
MmeI TCCRAC 4 cut(s) 205, 1143, 2262, 2819
MroI TCCGGA 2 cut(s) 772, 1714
MseI TTAA 9 cut(s) 480, 491, 512, 1320, 1383, 2010, 2015, 2072, 2153
MslI CAYNNNNRTG 1 cut(s) 2709
MspA1I CMGCKG 6 cut(s) 240, 350, 757, 943, 2133, 3073
MspI CCGG 7 cut(s) 773, 1488, 1499, 1715, 1725, 1825, 2799
MspR9I CCNGG 5 cut(s) 187, 1825, 1826, 2111, 2284
MunI CAATTG 2 cut(s) 924, 1056
Mva1269I GAATGC 1 cut(s) 1982
MvaI CCWGG 3 cut(s) 187, 2111, 2284
MwoI GCNNNNNNNGC 2 cut(s) 1532, 2230
NarI GGCGCC 1 cut(s) 1706
NciI CCSGG 2 cut(s) 1825, 1826
NdeI CATATG 1 cut(s) 1907
NlaIV GGNNCC 9 cut(s) 596, 792, 878, 1004, 1591, 1602, 1707, 2115, 2281
NmeAIII GCCGAG 1 cut(s) 1492
NmuCI GTSAC 3 cut(s) 1544, 1612, 2994
NspI RCATGY 3 cut(s) 520, 2612, 3107
NspV TTCGAA 1 cut(s) 1229
OliI CACNNNNGTG 1 cut(s) 2709
PaeI GCATGC 1 cut(s) 520
PaeR7I CTCGAG 1 cut(s) 1617
PagI TCATGA 1 cut(s) 2446
PciI ACATGT 2 cut(s) 2608, 3103
PcsI WCGNNNNNNNCGW 3 cut(s) 1672, 1681, 1706
PctI GAATGC 1 cut(s) 1982
Pfl23II CGTACG 1 cut(s) 1584
PinAI ACCGGT 1 cut(s) 2798
PkrI GCNGC 8 cut(s) 352, 759, 942, 1567, 1705, 1723, 2135, 2530
Ple19I CGATCG 1 cut(s) 1597
PleI GAGTC 4 cut(s) 682, 747, 1103, 1609
PluTI GGCGCC 1 cut(s) 1709
PpsI GAGTC 4 cut(s) 682, 747, 1103, 1609
PscI ACATGT 2 cut(s) 2608, 3103
PsiI TTATAA 1 cut(s) 1085
Psp6I CCWGG 3 cut(s) 185, 2109, 2282
PspGI CCWGG 3 cut(s) 185, 2109, 2282
PspLI CGTACG 1 cut(s) 1584
PspN4I GGNNCC 9 cut(s) 596, 792, 878, 1004, 1591, 1602, 1707, 2115, 2281
PspXI VCTCGAGB 1 cut(s) 1617
PstI CTGCAG 1 cut(s) 762
PsuI RGATCY 2 cut(s) 2271, 2941
PvuI CGATCG 1 cut(s) 1597
PvuII CAGCTG 5 cut(s) 350, 757, 943, 2133, 3073
RsaI GTAC 6 cut(s) 208, 792, 1586, 1781, 2007, 2585
RsaNI GTAC 6 cut(s) 207, 791, 1585, 1780, 2006, 2584
RseI CAYNNNNRTG 1 cut(s) 2709
Rsr2I CGGWCCG 1 cut(s) 2801
RsrII CGGWCCG 1 cut(s) 2801
SaqAI TTAA 9 cut(s) 480, 491, 512, 1320, 1383, 2010, 2015, 2072, 2153
SatI GCNGC 8 cut(s) 351, 758, 941, 1566, 1704, 1722, 2134, 2529
SchI GAGTC 4 cut(s) 683, 748, 1103, 1609
ScrFI CCNGG 5 cut(s) 187, 1825, 1826, 2111, 2284
SduI GDGCHC 1 cut(s) 2979
SfaNI GCATC 2 cut(s) 1148, 2464
SfcI CTRYAG 1 cut(s) 758
SfoI GGCGCC 1 cut(s) 1707
Sfr274I CTCGAG 1 cut(s) 1617
SfuI TTCGAA 1 cut(s) 1229
SinI GGWCC 7 cut(s) 485, 876, 1052, 1274, 2235, 2400, 2801
SlaI CTCGAG 1 cut(s) 1617
SmaI CCCGGG 1 cut(s) 1826
SmiMI CAYNNNNRTG 1 cut(s) 2709
SmlI CTYRAG 5 cut(s) 736, 1617, 1928, 2215, 2707
SmoI CTYRAG 5 cut(s) 736, 1617, 1928, 2215, 2707
SphI GCATGC 1 cut(s) 520
SspDI GGCGCC 1 cut(s) 1705
SspI AATATT 2 cut(s) 573, 2953
SspMI CTAG 3 cut(s) 827, 881, 2126
StyD4I CCNGG 5 cut(s) 185, 1823, 1824, 2109, 2282
StyI CCWWGG 3 cut(s) 210, 989, 2158
TaaI ACNGT 5 cut(s) 179, 269, 852, 1531, 2314
TaiI ACGT 1 cut(s) 3133
TaqI TCGA 9 cut(s) 1229, 1312, 1374, 1577, 1618, 1666, 1675, 1732, 1756
TaqII GACCGA 1 cut(s) 864
TatI WGTACW 3 cut(s) 1779, 2005, 2583
TauI GCSGC 3 cut(s) 1568, 1706, 1724
Tru1I TTAA 9 cut(s) 480, 491, 512, 1320, 1383, 2010, 2015, 2072, 2153
Tru9I TTAA 9 cut(s) 480, 491, 512, 1320, 1383, 2010, 2015, 2072, 2153
TseFI GTSAC 3 cut(s) 1544, 1612, 2994
TseI GCWGC 5 cut(s) 350, 757, 940, 2133, 2528
Tsp45I GTSAC 3 cut(s) 1544, 1612, 2994
TspMI CCCGGG 1 cut(s) 1824
VpaK11BI GGWCC 7 cut(s) 485, 876, 1052, 1274, 2235, 2400, 2801
XagI CCTNNNNNAGG 1 cut(s) 2287
XbaI TCTAGA 1 cut(s) 826
XceI RCATGY 3 cut(s) 520, 2612, 3107
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 2776
XhoI CTCGAG 1 cut(s) 1617
XmaI CCCGGG 1 cut(s) 1824
XspI CTAG 3 cut(s) 827, 881, 2126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.