Prupe.1G088500_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
6629032 .. 6630308
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G088500.1

Sequence Viewer

Length: 894 bp
ATGGTTTCTGCTTCTGCTTCGAATGTTTCCGCCATTTTACTGCTTTTCCTTTCCATAATCAGCACTTCTAGGGTTGCATTTTGTGGCAAGTTTTATCAAGATTTTTACATAACATGGGGAGGGGATGATCATTCTAAAATGCTCAACAATGGAGAGCTCCTAACTGTCTCTCTTGACAATGTTAGTGGCTCAGCTTTTGAGTCATATAATCAATATCTATATGCAAAGATAGATATGCAAATTAAGCTTGTTGCTGGAAACTCTGCTGGCACTGTCACTACCTTCTATTTATCCTCAACAGGTTCATATCATGATGAGATAGACTTTGAATTCTTGGGGAACCTTAGTGGTGACCCTTACATACTTCATACTAATGTGTTCTGCCAAGGCAAGGGCAACAGAGAGCAGCAATTCTACCTTTGGTTTGACCCCACTGCAGATTTTCACACGTACTCTATACTTTGGAATCCCCAAAACATCATCTTCTTGGTTGATGGCCTCCCCATTAGGCAGTTCAAGAACCTTGAGTCTTATGGTATTCCATTCCCCAACTACCAGCCTATGAGGTTATACTCCAGTCTCTGGAATGCTGATAACTGGGCCACAAGAGGTGGACTGGTGAAGATAGATTGGACCCAATCACCCTTCACTGCATCCTACATGAATTTCAATGCTGATGGTTGCATTTGGTCTTATGGAACTTCTTCTTGTGATTCAAATTCTCCAAATTCCAATGCCAACAAAGGAGCATGGTACTGGGAGAAGCTTGATTATTCAGATCAAGGGAAGATGGCATGGGTGCAAAATAATTATATGATCTACAATTACTGCACAGACACAAAGAGATTCCCTCAAGGCTTTGCTCCAGAATGCTATCTCACCAATTTGCCCTAG

Protein Analysis

298

Amino Acids

33.79

Weight (kDa)

4.8

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016303)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 582
AciI CCGC 1 cut(s) 30
AcsI RAATTY 4 cut(s) 329, 664, 718, 727
AfaI GTAC 2 cut(s) 452, 755
AfiI CCNNNNNNNGG 2 cut(s) 391, 582
AflIII ACRYGT 1 cut(s) 447
AgsI TTSAA 4 cut(s) 329, 517, 670, 717
AluBI AGCT 4 cut(s) 157, 194, 247, 766
AluI AGCT 4 cut(s) 157, 194, 247, 766
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 172, 584
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 2 cut(s) 496, 600
ApeKI GCWGC 1 cut(s) 406
ApoI RAATTY 4 cut(s) 329, 664, 718, 727
Asp700I GAANNNNTTC 1 cut(s) 703
AspS9I GGNCC 2 cut(s) 600, 633
AsuHPI GGTGA 4 cut(s) 362, 631, 633, 871
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 418
BccI CCATC 3 cut(s) 488, 671, 784
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 172, 584
BfaI CTAG 2 cut(s) 69, 892
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 1 cut(s) 407
BlpI GCTNAGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 600, 633
BmiI GGNNCC 2 cut(s) 341, 635
BmrI ACTGGG 2 cut(s) 607, 766
BmsI GCATC 1 cut(s) 662
BmuI ACTGGG 2 cut(s) 607, 766
BplI GAGNNNNNCTC 2 cut(s) 835, 867
BpmI CTGGAG 2 cut(s) 559, 849
Bpu1102I GCTNAGC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 545, 837
BsaAI YACGTR 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 582
Bse1I ACTGG 4 cut(s) 576, 602, 621, 761
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 2 cut(s) 130, 653
BseLI CCNNNNNNNGG 2 cut(s) 391, 582
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 4 cut(s) 576, 602, 621, 761
BseXI GCAGC 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 814
BshFI GGCC 2 cut(s) 498, 602
BsiHKAI GWGCWC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 391, 582
BsmAI GTCTC 2 cut(s) 172, 584
BsmI GAATGC 2 cut(s) 592, 875
BsnI GGCC 2 cut(s) 498, 602
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 127, 778, 816
Bsp1720I GCTNAGC 1 cut(s) 190
BspACI CCGC 1 cut(s) 30
BspANI GGCC 2 cut(s) 498, 602
BspCNI CTCAG 1 cut(s) 203
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 341, 635
BspMAI CTGCAG 1 cut(s) 439
BspT104I TTCGAA 1 cut(s) 20
BsrI ACTGG 4 cut(s) 576, 602, 621, 761
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 3 cut(s) 127, 778, 816
BssT1I CCWWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 166, 274
BstBAI YACGTR 1 cut(s) 450
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 190, 344
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 2 cut(s) 130, 653
BstKTI GATC 3 cut(s) 130, 781, 819
BstMAI GTCTC 2 cut(s) 172, 584
BstMBI GATC 3 cut(s) 127, 778, 816
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstPI GGTNACC 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 418
BsuRI GGCC 2 cut(s) 498, 602
BtsCI GGATG 2 cut(s) 130, 653
BtsI GCAGTG 2 cut(s) 432, 648
BtsIMutI CAGTG 3 cut(s) 270, 432, 648
Cac8I GCNNGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 582
CciI TCATGA 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 600, 633
Csp6I GTAC 2 cut(s) 451, 754
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 5 cut(s) 114, 311, 661, 750, 795
CviJI RGCY 9 cut(s) 157, 189, 194, 247, 498, 559, 602, 766, 858
CviKI_1 RGCY 9 cut(s) 157, 189, 194, 247, 498, 559, 602, 766, 858
CviQI GTAC 2 cut(s) 451, 754
DdeI CTNAG 2 cut(s) 190, 344
DpnI GATC 3 cut(s) 129, 780, 818
DpnII GATC 3 cut(s) 127, 778, 816
EciI GGCGGA 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 633
Eco53kI GAGCTC 1 cut(s) 157
Eco91I GGTNACC 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 5 cut(s) 117, 314, 664, 753, 798
FatI CATG 5 cut(s) 113, 310, 660, 749, 794
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 407
FokI GGATG 2 cut(s) 137, 640
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 407
FspBI CTAG 2 cut(s) 69, 892
GluI GCNGC 1 cut(s) 407
GsuI CTGGAG 2 cut(s) 559, 849
HaeIII GGCC 2 cut(s) 498, 602
Hin1II CATG 5 cut(s) 117, 314, 664, 753, 798
HindIII AAGCTT 2 cut(s) 245, 764
HinfI GANTC 5 cut(s) 200, 466, 527, 713, 846
HphI GGTGA 4 cut(s) 362, 631, 633, 871
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 1 cut(s) 778
Hpy188III TCNNGA 6 cut(s) 98, 173, 311, 517, 583, 866
Hpy8I GTNNAC 1 cut(s) 614
HpyAV CCTTC 2 cut(s) 292, 655
HpyCH4III ACNGT 2 cut(s) 166, 274
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 8 cut(s) 77, 224, 238, 437, 653, 684, 802, 831
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 2 cut(s) 190, 344
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 5 cut(s) 117, 314, 664, 753, 798
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 127, 778, 816
LmnI GCTCC 3 cut(s) 162, 746, 868
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 662
MaeI CTAG 2 cut(s) 69, 892
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 2 cut(s) 274, 350
MalI GATC 3 cut(s) 129, 780, 818
MboI GATC 3 cut(s) 127, 778, 816
MboII GAAGA 4 cut(s) 475, 634, 696, 799
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 9 cut(s) 240, 329, 410, 664, 718, 727, 808, 823, 883
MlyI GAGTC 2 cut(s) 209, 536
MnlI CCTC 6 cut(s) 113, 304, 509, 558, 602, 861
MroXI GAANNNNTTC 1 cut(s) 703
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 372
Mva1269I GAATGC 2 cut(s) 592, 875
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 3 cut(s) 127, 778, 816
NlaIII CATG 5 cut(s) 117, 314, 664, 753, 798
NlaIV GGNNCC 2 cut(s) 341, 635
NmuCI GTSAC 2 cut(s) 274, 350
NspV TTCGAA 1 cut(s) 20
PagI TCATGA 1 cut(s) 310
PctI GAATGC 2 cut(s) 592, 875
PdmI GAANNNNTTC 1 cut(s) 703
PfeI GAWTC 3 cut(s) 466, 713, 846
PflMI CCANNNNNTGG 1 cut(s) 582
PkrI GCNGC 1 cut(s) 408
PleI GAGTC 2 cut(s) 208, 535
PpsI GAGTC 2 cut(s) 208, 535
Ppu21I YACGTR 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 341, 635
PspPI GGNCC 2 cut(s) 600, 633
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 582
RsaI GTAC 2 cut(s) 452, 755
RsaNI GTAC 2 cut(s) 451, 754
RseI CAYNNNNRTG 1 cut(s) 372
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 407
Sau3AI GATC 3 cut(s) 127, 778, 816
Sau96I GGNCC 2 cut(s) 600, 633
SchI GAGTC 2 cut(s) 209, 536
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 1 cut(s) 662
SfcI CTRYAG 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 524, 852
SmoI CTYRAG 2 cut(s) 524, 852
Sse9I AATT 9 cut(s) 240, 329, 410, 664, 718, 727, 808, 823, 883
SsiI CCGC 1 cut(s) 30
SspMI CTAG 2 cut(s) 69, 892
SstI GAGCTC 1 cut(s) 159
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 2 cut(s) 166, 274
TaiI ACGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 20
TasI AATT 9 cut(s) 240, 329, 410, 664, 718, 727, 808, 823, 883
TfiI GAWTC 3 cut(s) 466, 713, 846
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 3 cut(s) 277, 439, 655
TseFI GTSAC 2 cut(s) 274, 350
TseI GCWGC 1 cut(s) 406
Tsp45I GTSAC 2 cut(s) 274, 350
TspDTI ATGAA 3 cut(s) 294, 356, 677
TspRI CASTG 3 cut(s) 277, 439, 655
Van91I CCANNNNNTGG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 633
XapI RAATTY 4 cut(s) 329, 664, 718, 727
XmnI GAANNNNTTC 1 cut(s) 703
XspI CTAG 2 cut(s) 69, 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.