Rorug04G0038700

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016303
Physical Location & Seq
Forward (+)
5801959 .. 5802402
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0038700.1

Sequence Viewer

Length: 444 bp
ATGGGGCTCGAAATCGACTTAAATTTGGCTGCTGAGGAAGATGATAATTATAATGAAGATGGCATGGATGATGATAATTATAATGAAGATGGTATGAATGACGATAATTATAATGAAGATGGTGTAGGAGAAGAATGTGGTCATAGTAATGGTGGTGAAAGCTCCATTAATATGAAGAAAAACTCAGAGCCATATGTTGGAATGGAATTTGATTCTGATTGGATTGCACAATCATTTTATTTAGAGTATGCCAAGATGACAGGGTTTGCTGCTTCAAACATAGCTTGTCGTCGATCAAAGGTAACTCAAGAATGGGTCGAGGCAAAGTATGCTTGTACAAGATTTGGGACAAAGCGAAAAACTGATGCTTGTAACCCCCGTCCATGCGTGAAAATAGACTGCAAGGCAATGTTGGATGTCAAAAGAAGGCAAGATGGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

147

Amino Acids

16.62

Weight (kDa)

4.45

Isoelectric Point (pI)

66.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 78 - 147 2.7e-13 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016303)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09250
malus_domestica MD13G1268400.v1.1
prunus_persica Prupe.1G088500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0402841 RchiOBHm_Chr4g0402851 RchiOBHm_Chr4g0402861
rosa_laevigata RLG00000009045
rosa_multiflora Rmu_sc0002451.1_g000049 Rmu_sc0008058.1_g000013
rosa_roxburghii Rroxscaffold_5G00347580 Rroxscaffold_5G00347590
rosa_rugosa Rorug04G0038700 Rorug04G0038800
rosa_samantha Rh4AG116100
rosa_wichuraiana Rw4G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 51, 81, 111
AccB7I CCANNNNNTGG 1 cut(s) 197
AcsI RAATTY 2 cut(s) 22, 206
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 276
AluBI AGCT 2 cut(s) 162, 284
AluI AGCT 2 cut(s) 162, 284
ApeKI GCWGC 2 cut(s) 29, 269
ApoI RAATTY 2 cut(s) 22, 206
AseI ATTAAT 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 167
BanII GRGCYC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 16, 256
BccI CCATC 4 cut(s) 53, 83, 113, 428
BisI GCNGC 2 cut(s) 30, 270
BlsI GCNGC 2 cut(s) 31, 271
BmsI GCATC 1 cut(s) 355
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 414
BseGI GGATG 2 cut(s) 73, 421
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 24, 198
BseXI GCAGC 2 cut(s) 16, 256
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 1 cut(s) 293
BspCNI CTCAG 2 cut(s) 25, 197
BsrDI GCAATG 1 cut(s) 414
BsrGI TGTACA 1 cut(s) 335
BssMI GATC 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 33, 184
BstF5I GGATG 2 cut(s) 73, 421
BstKTI GATC 1 cut(s) 296
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 16, 256
BtsCI GGATG 2 cut(s) 73, 421
Csp6I GTAC 1 cut(s) 336
CviAII CATG 2 cut(s) 64, 384
CviJI RGCY 5 cut(s) 7, 29, 162, 190, 284
CviKI_1 RGCY 5 cut(s) 7, 29, 162, 190, 284
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 2 cut(s) 33, 184
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 2 cut(s) 67, 387
FaqI GGGAC 1 cut(s) 361
FatI CATG 2 cut(s) 63, 383
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 30, 270
FokI GGATG 2 cut(s) 80, 428
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 30, 270
GluI GCNGC 2 cut(s) 30, 270
Hin1II CATG 2 cut(s) 67, 387
HinfI GANTC 1 cut(s) 212
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 187, 217
Hpy188III TCNNGA 1 cut(s) 308
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 227, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 33, 184
Hsp92II CATG 2 cut(s) 67, 387
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 246
Lsp1109I GCAGC 2 cut(s) 16, 256
LweI GCATC 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 301, 371
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 6 cut(s) 50, 68, 98, 128, 143, 187
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 5 cut(s) 22, 46, 76, 106, 206
MmeI TCCRAC 2 cut(s) 178, 393
MnlI CCTC 2 cut(s) 28, 313
MseI TTAA 2 cut(s) 20, 168
MslI CAYNNNNRTG 2 cut(s) 147, 170
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 293
NlaIII CATG 2 cut(s) 67, 387
PfeI GAWTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 2 cut(s) 31, 271
PshBI ATTAAT 1 cut(s) 168
PsiI TTATAA 3 cut(s) 51, 81, 111
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
RseI CAYNNNNRTG 2 cut(s) 147, 170
SaqAI TTAA 2 cut(s) 20, 168
SatI GCNGC 2 cut(s) 30, 270
Sau3AI GATC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 9
SetI ASST 3 cut(s) 164, 286, 303
SfaNI GCATC 1 cut(s) 355
SmiMI CAYNNNNRTG 2 cut(s) 147, 170
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 5 cut(s) 22, 46, 76, 106, 206
TaqI TCGA 4 cut(s) 9, 15, 292, 318
TasI AATT 5 cut(s) 22, 46, 76, 106, 206
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 20, 168
Tru9I TTAA 2 cut(s) 20, 168
TseI GCWGC 2 cut(s) 29, 269
TspDTI ATGAA 5 cut(s) 69, 99, 110, 129, 188
Van91I CCANNNNNTGG 1 cut(s) 197
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 2 cut(s) 22, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.