Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016303

Physical Location & Seq

Genomic Coordinates Reverse (-)

20870081 .. 20871485

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G009300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTTTCTGCTTATTTTTCTTCTTCCAATGTTTCAGCCTTGCTCGTTTTCCTCTTCATGATGAGCACTTCCATGGTTGCCTTTGGTGGCAAATTTTACGATGATTTCTACATAACATGGGGACCGGAGAATGCTAAAATGCTCGATTATGGGCATGGCTCGGCATTTGAGTCCTACAATCAATATCTATATGTAAAGATAGACATGCAAATCAAACTTGTTGCCGGAAACTCTGCCGGTACCGTCACTACATTCTACTTATCCTCAACAGGAAATCATCATGATGAGATAGACTTTGAATTCTTGGGAAATGTTACCGGTCAGCCTTACATTCTTCATACGAATGTCTTTTGCCAAGGACAGGGCAACAAAGAGCAGCAATTCTACCTTTGGTTTGATCCTACTGCCGATTTCCACACATATTCTATCCTTTGGAATCCCCTAAACATTGTCTTCTTGGTAGATGGCATTCCCATTAGACAGTTCAAGAACCTGGAGTCCTTTGGCATTCCATTTCCCAAATACCAGCCTATGAGGTTATACTCCAGTCTCTGGAATGCGGATAACTGGGCTACAAGAGGTGGACTGGAGAAAATAGATTGGACGCAAGCACCCTTTACTGCATCTTACAGGAACTTCAATGCCAATTCTGATTTCCATGGAGCATGGTACTGGAAGAAGGTGGATTATTCGGGTAAAGGGCAGATACAATGGGTGCAAAATAACTATATGATCTACAACTACTGCACAGACTCGAAGCGATTCCCCCTAGGGTTTGCTCCTGAATGTTATTTGACTAATCTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

269

Amino Acids

31.08

Weight (kDa)

5.62

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	48 - 202	1.6e-58	Glycosyl hydrolases family 16
XET_C	PF06955	222 - 263	4.4e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016303)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09250
malus_domestica	MD13G1268400.v1.1
prunus_persica	Prupe.1G088500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402841 RchiOBHm_Chr4g0402851 RchiOBHm_Chr4g0402861
rosa_laevigata	RLG00000009045
rosa_multiflora	Rmu_sc0002451.1_g000049 Rmu_sc0008058.1_g000013
rosa_roxburghii	Rroxscaffold_5G00347580 Rroxscaffold_5G00347590
rosa_rugosa	Rorug04G0038700 Rorug04G0038800
rosa_samantha	Rh4AG116100
rosa_wichuraiana	Rw4G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	802
Acc65I	GGTACC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	552
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	2 cut(s)	92, 299
AfaI	GTAC	2 cut(s)	241, 671
AfiI	CCNNNNNNNGG	2 cut(s)	361, 552
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	299, 487, 640
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	552
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	2 cut(s)	92, 299
AsiGI	ACCGGT	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	761
Asp718I	GGTACC	1 cut(s)	239
AspA2I	CCTAGG	1 cut(s)	769
AspS9I	GGNCC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	122
AvrII	CCTAGG	1 cut(s)	769
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	770, 808
BisI	GCNGC	1 cut(s)	377
BlnI	CCTAGG	1 cut(s)	769
BlsI	GCNGC	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	123, 241
BmrFI	CCNGG	1 cut(s)	494
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	1 cut(s)	632
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	445
BpmI	CTGGAG	3 cut(s)	515, 529, 608
BsaJI	CCNNGG	4 cut(s)	72, 355, 658, 769
BsaWI	WCCGGW	2 cut(s)	124, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 552
Bse118I	RCCGGY	2 cut(s)	236, 317
Bse1I	ACTGG	4 cut(s)	546, 572, 591, 677
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	4 cut(s)	72, 355, 658, 769
BseLI	CCNNNNNNNGG	2 cut(s)	361, 552
BseNI	ACTGG	4 cut(s)	546, 572, 591, 677
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	239
BshTI	ACCGGT	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	4 cut(s)	125, 225, 237, 318
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	361, 552
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	4 cut(s)	136, 468, 507, 562
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	397, 732
Bsp19I	CCATGG	2 cut(s)	72, 658
BspACI	CCGC	1 cut(s)	560
BspHI	TCATGA	2 cut(s)	57, 280
BspLI	GGNNCC	2 cut(s)	123, 241
BspPI	GGATC	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	236, 317
BsrI	ACTGG	4 cut(s)	546, 572, 591, 677
BssAI	RCCGGY	2 cut(s)	236, 317
BssECI	CCNNGG	4 cut(s)	72, 355, 658, 769
BssMI	GATC	2 cut(s)	397, 732
BssT1I	CCWWGG	4 cut(s)	72, 355, 658, 769
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	244, 483
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	609
BstDSI	CCRYGG	2 cut(s)	72, 658
BstKTI	GATC	2 cut(s)	400, 735
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	2 cut(s)	397, 732
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	445
BtgI	CCRYGG	2 cut(s)	72, 658
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	552
CciI	TCATGA	2 cut(s)	57, 280
Cfr10I	RCCGGY	2 cut(s)	236, 317
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	240, 670
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	8 cut(s)	58, 73, 117, 155, 205, 281, 659, 666
CviJI	RGCY	5 cut(s)	38, 159, 325, 529, 572
CviKI_1	RGCY	5 cut(s)	38, 159, 325, 529, 572
CviQI	GTAC	2 cut(s)	240, 670
DpnI	GATC	2 cut(s)	399, 734
DpnII	GATC	2 cut(s)	397, 732
DrdI	GACNNNNNNGTC	1 cut(s)	802
DseDI	GACNNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	4 cut(s)	72, 355, 658, 769
Eco47I	GGWCC	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	4 cut(s)	72, 355, 658, 769
ErhI	CCWWGG	4 cut(s)	72, 355, 658, 769
FaeI	CATG	8 cut(s)	61, 76, 120, 158, 208, 284, 662, 669
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	8 cut(s)	57, 72, 116, 154, 204, 280, 658, 665
Fnu4HI	GCNGC	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	377
FspBI	CTAG	2 cut(s)	770, 808
GluI	GCNGC	1 cut(s)	377
GsuI	CTGGAG	3 cut(s)	515, 529, 608
HapII	CCGG	4 cut(s)	125, 225, 237, 318
HgaI	GACGC	1 cut(s)	613
Hin1II	CATG	8 cut(s)	61, 76, 120, 158, 208, 284, 662, 669
HinfI	GANTC	5 cut(s)	170, 436, 497, 752, 762
HpaII	CCGG	4 cut(s)	125, 225, 237, 318
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	1 cut(s)	652
Hpy188III	TCNNGA	5 cut(s)	58, 281, 487, 553, 782
Hpy8I	GTNNAC	1 cut(s)	584
HpyAV	CCTTC	1 cut(s)	673
HpyCH4III	ACNGT	2 cut(s)	244, 483
HpyCH4V	TGCA	4 cut(s)	208, 623, 718, 747
Hsp92II	CATG	8 cut(s)	61, 76, 120, 158, 208, 284, 662, 669
KpnI	GGTACC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	397, 732
LmnI	GCTCC	2 cut(s)	662, 784
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	632
MaeI	CTAG	2 cut(s)	770, 808
MaeIII	GTNAC	2 cut(s)	244, 313
MalI	GATC	2 cut(s)	399, 734
MboI	GATC	2 cut(s)	397, 732
MboII	GAAGA	6 cut(s)	12, 15, 46, 326, 445, 688
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	4 cut(s)	92, 299, 380, 646
MlyI	GAGTC	3 cut(s)	179, 506, 746
MnlI	CCTC	4 cut(s)	62, 274, 528, 572
MroXI	GAANNNNTTC	1 cut(s)	761
MslI	CAYNNNNRTG	3 cut(s)	71, 282, 342
MspI	CCGG	4 cut(s)	125, 225, 237, 318
MspR9I	CCNGG	1 cut(s)	494
Mva1269I	GAATGC	4 cut(s)	136, 468, 507, 562
MvaI	CCWGG	1 cut(s)	494
NcoI	CCATGG	2 cut(s)	72, 658
NdeII	GATC	2 cut(s)	397, 732
NlaIII	CATG	8 cut(s)	61, 76, 120, 158, 208, 284, 662, 669
NlaIV	GGNNCC	2 cut(s)	123, 241
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	208
PagI	TCATGA	2 cut(s)	57, 280
PctI	GAATGC	4 cut(s)	136, 468, 507, 562
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	2 cut(s)	436, 762
PflMI	CCANNNNNTGG	1 cut(s)	552
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	378
PleI	GAGTC	3 cut(s)	178, 505, 746
PpsI	GAGTC	3 cut(s)	178, 505, 746
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	123, 241
PspPI	GGNCC	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	552
RsaI	GTAC	2 cut(s)	241, 671
RsaNI	GTAC	2 cut(s)	240, 670
RseI	CAYNNNNRTG	3 cut(s)	71, 282, 342
SatI	GCNGC	1 cut(s)	377
Sau3AI	GATC	2 cut(s)	397, 732
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	3 cut(s)	179, 506, 746
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	5 cut(s)	390, 495, 539, 583, 684
SfaNI	GCATC	1 cut(s)	632
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	3 cut(s)	71, 282, 342
Sse9I	AATT	4 cut(s)	92, 299, 380, 646
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	2 cut(s)	770, 808
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	4 cut(s)	72, 355, 658, 769
TaaI	ACNGT	2 cut(s)	244, 483
TaqI	TCGA	2 cut(s)	144, 755
TasI	AATT	4 cut(s)	92, 299, 380, 646
TfiI	GAWTC	2 cut(s)	436, 762
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	46, 326
Van91I	CCANNNNNTGG	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	92, 299
XceI	RCATGY	1 cut(s)	208
XmaJI	CCTAGG	1 cut(s)	769
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	2 cut(s)	770, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.