FvH4_4g11610

Protein ROOT PRIMORDIUM DEFECTIVE 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011284
Physical Location & Seq
Forward (+)
15310579 .. 15313595
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11610.t1

Sequence Viewer

Length: 1278 bp
ATGGTCCCGTACATGCTATTTGGTAAGGTTGGGGTTGGCTTCCTCCGTGGAACACAAGTATTTAATCACAAGCAGAAGCGTAATCTGGTTAATGTTAAATTGAAATGGGTTAAAGATAGGGCATTGGATGCTGTTGTGACTGCTGAGAGGGATCTCAAAGCTGCCTGTGTTCTTGTTTCCATCATCTCCTCCTCGTCTCATGGCTGCCTCCCCATATACCATCTCTCTTGTCATCGTGGACAACTCAATCTTCCTTATGAGCTCAAGGTGTCTACTTTCATTAGGAGATACCCTTCTGTTTTCCTAGAGTCCCATGTTCACGATAGCGGTGGCACTCGTGTCCCATGTTTCAGCTTAACTCCTGAAGCCATAAAACTCCACCAAGAAGAGTCCAATCTCGTCCAGCAGAATCAGATTGATATCCTTAATAGGCTTCGGAAACTGCTGATGCTCACTAGGGGATGGAAGCTTCCTTTACAAACCATTGACCAACTGAAATGGGACATAGGTTTGCCATATGATTACCAGCATTCAGTAATTCCACATCACCCTGATCTATTCTCTTTTATCAGCTTACCAGATGACCGTGTTGGCTTGAAGCTCTTATCCTGGGATGATGACCTCGCTGTCTCCCAATTGCAAAAGAATTCTGCTATACAACAAGAGAAAGAAGATATGAGAAATGGCTGTTTAGCTTTTCCAATTGGATTTACTAGGGGTTTTGGATTGAAAAGAAAATGCATGGAGTGGTTGAAAGAGTGGCAAAGCCTCCCTTATAATTCTCCATACTATGACACCTCCCATATAGATCCTCGTACAGATGAATCTGAGAAGAGGGTTGTCGGAGTCTTCCATGAGCTTCTTCATCTCACTATACAAAAGAAAACTGAACGGAAGAATGTGAGCAACCTTCGTAAACCTTTGGCCCTACCCCAGAAGTTCACTAAAGTGTTTGAGCGTCATCCAGGTATTTTCTACATTTCAAAAAAGTGTGACACTCAAACTGTCATTCTGAGGGAAGCCTATGATCATCAACAACTCTTGCAGAAACACCCTACTGCAGAACTGAGAGAAAAATTTGCAATGCTGTTGAGGAAAGGTTTGCTGGATAGGAGCAACGGTCTATACAAGAAGAGTCCAGGAGATGTATCCGAAGTGGATCCATTGAAACATAATATTGTTGATAATATCAGTGATTACCGATCCAGCTTTAAAGAGGATTCGGAGAATGATTTGCTTTCTGAGTATGAATCAGATGAACTACACAATCCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

426

Amino Acids

49.17

Weight (kDa)

8.81

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 37 - 367 1.8e-120 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AasI GACNNNNNNGTC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 272
AciI CCGC 1 cut(s) 327
AclWI GGATC 5 cut(s) 159, 803, 1154, 1167, 1197
AcsI RAATTY 2 cut(s) 646, 1076
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 11, 817
AgsI TTSAA 6 cut(s) 103, 598, 730, 754, 984, 1168
AjnI CCWGG 3 cut(s) 608, 964, 1138
AleI CACNNNNGTG 1 cut(s) 947
AluBI AGCT 9 cut(s) 161, 262, 354, 469, 573, 601, 695, 859, 1209
AluI AGCT 9 cut(s) 161, 262, 354, 469, 573, 601, 695, 859, 1209
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 201, 634
AlwI GGATC 5 cut(s) 159, 803, 1154, 1167, 1197
AoxI GGCC 1 cut(s) 924
ApeKI GCWGC 2 cut(s) 161, 204
ApoI RAATTY 2 cut(s) 646, 1076
AspS9I GGNCC 2 cut(s) 4, 925
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 1159
BanII GRGCYC 1 cut(s) 264
BauI CACGAG 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 148, 191
BccI CCATC 3 cut(s) 188, 228, 456
BciT130I CCWGG 3 cut(s) 610, 966, 1140
BciVI GTATCC 1 cut(s) 1159
BclI TGATCA 1 cut(s) 1027
BcoDI GTCTC 2 cut(s) 201, 634
BfaI CTAG 3 cut(s) 305, 456, 714
BfmI CTRYAG 1 cut(s) 1059
BfuI GTATCC 1 cut(s) 1159
BisI GCNGC 2 cut(s) 162, 205
BlsI GCNGC 2 cut(s) 163, 206
Bme1390I CCNGG 3 cut(s) 610, 966, 1140
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 925
BmiI GGNNCC 2 cut(s) 6, 1161
BmrFI CCNGG 3 cut(s) 610, 966, 1140
BmsI GCATC 2 cut(s) 118, 438
BpiI GAAGAC 1 cut(s) 841
BpuEI CTTGAG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 46, 609
BsaXI ACNNNNNCTCC 2 cut(s) 1105, 1135
Bse3DI GCAATG 1 cut(s) 1089
Bse8I GATNNNNATC 1 cut(s) 419
BseBI CCWGG 3 cut(s) 610, 966, 1140
BseDI CCNNGG 2 cut(s) 46, 609
BseGI GGATG 4 cut(s) 133, 467, 619, 961
BseJI GATNNNNATC 1 cut(s) 419
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 5 cut(s) 135, 819, 1004, 1058, 1233
BseRI GAGGAG 2 cut(s) 178, 181
BseXI GCAGC 2 cut(s) 148, 191
BshFI GGCC 1 cut(s) 926
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 3 cut(s) 295, 326, 515
BsmAI GTCTC 2 cut(s) 201, 634
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 3 cut(s) 295, 326, 515
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 1 cut(s) 926
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 6 cut(s) 151, 553, 808, 1027, 1159, 1202
BspACI CCGC 1 cut(s) 327
BspANI GGCC 1 cut(s) 926
BspCNI CTCAG 5 cut(s) 136, 820, 1005, 1059, 1234
BspLI GGNNCC 2 cut(s) 6, 1161
BspMAI CTGCAG 1 cut(s) 1063
BspPI GGATC 5 cut(s) 159, 803, 1154, 1167, 1197
BsrDI GCAATG 1 cut(s) 1089
BssECI CCNNGG 2 cut(s) 46, 609
BssMI GATC 6 cut(s) 151, 553, 808, 1027, 1159, 1202
BssSI CACGAG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 3 cut(s) 610, 966, 1140
Bst4CI ACNGT 3 cut(s) 587, 1006, 1121
Bst6I CTCTTC 3 cut(s) 381, 827, 1127
BstAPI GCANNNNNTGC 1 cut(s) 128
BstDEI CTNAG 5 cut(s) 144, 828, 1013, 1067, 1242
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 4 cut(s) 133, 467, 619, 961
BstKTI GATC 6 cut(s) 154, 556, 811, 1030, 1162, 1205
BstMAI GTCTC 2 cut(s) 201, 634
BstMBI GATC 6 cut(s) 151, 553, 808, 1027, 1159, 1202
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 3 cut(s) 610, 966, 1140
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 3 cut(s) 608, 964, 1138
BstSFI CTRYAG 1 cut(s) 1059
BstV1I GCAGC 2 cut(s) 148, 191
BstV2I GAAGAC 1 cut(s) 841
BstX2I RGATCY 3 cut(s) 151, 808, 1159
BstYI RGATCY 3 cut(s) 151, 808, 1159
BsuI GTATCC 1 cut(s) 1159
BsuRI GGCC 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 4 cut(s) 133, 467, 619, 961
BtsIMutI CAGTG 1 cut(s) 1198
Cfr13I GGNCC 2 cut(s) 4, 925
CseI GACGC 1 cut(s) 947
Csp6I GTAC 2 cut(s) 10, 816
CviAII CATG 6 cut(s) 13, 200, 314, 345, 742, 854
CviQI GTAC 2 cut(s) 10, 816
DdeI CTNAG 5 cut(s) 144, 828, 1013, 1067, 1242
DpnI GATC 6 cut(s) 153, 555, 810, 1029, 1161, 1204
DpnII GATC 6 cut(s) 151, 553, 808, 1027, 1159, 1202
DraI TTTAAA 1 cut(s) 1213
DrdI GACNNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 1 cut(s) 626
Eam1104I CTCTTC 3 cut(s) 381, 827, 1127
EarI CTCTTC 3 cut(s) 381, 827, 1127
Ecl136II GAGCTC 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 3 cut(s) 608, 964, 1138
EcoRV GATATC 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 743
EcoT38I GRGCYC 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 6 cut(s) 16, 203, 317, 348, 745, 857
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FaqI GGGAC 3 cut(s) 295, 326, 515
FatI CATG 6 cut(s) 12, 199, 313, 344, 741, 853
FauNDI CATATG 1 cut(s) 517
FbaI TGATCA 1 cut(s) 1027
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 2 cut(s) 162, 205
FokI GGATG 4 cut(s) 140, 474, 626, 948
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 162, 205
FspBI CTAG 3 cut(s) 305, 456, 714
GluI GCNGC 2 cut(s) 162, 205
HaeIII GGCC 1 cut(s) 926
HgaI GACGC 1 cut(s) 947
Hin1II CATG 6 cut(s) 16, 203, 317, 348, 745, 857
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 8 cut(s) 308, 389, 409, 824, 846, 1135, 1220, 1250
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 5 cut(s) 239, 273, 319, 917, 942
Hpy188I TCNGA 9 cut(s) 414, 438, 829, 845, 1014, 1153, 1225, 1243, 1255
Hpy188III TCNNGA 2 cut(s) 320, 362
Hpy8I GTNNAC 5 cut(s) 239, 273, 319, 917, 942
HpyAV CCTTC 2 cut(s) 303, 920
HpyCH4III ACNGT 3 cut(s) 587, 1006, 1121
HpyCH4V TGCA 5 cut(s) 640, 741, 1045, 1061, 1082
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 5 cut(s) 144, 828, 1013, 1067, 1242
Hsp92II CATG 6 cut(s) 16, 203, 317, 348, 745, 857
Ksp22I TGATCA 1 cut(s) 1027
Kzo9I GATC 6 cut(s) 151, 553, 808, 1027, 1159, 1202
LmnI GCTCC 1 cut(s) 1113
Lsp1109I GCAGC 2 cut(s) 148, 191
LweI GCATC 2 cut(s) 118, 438
MaeI CTAG 3 cut(s) 305, 456, 714
MaeIII GTNAC 2 cut(s) 136, 992
MalI GATC 6 cut(s) 153, 555, 810, 1029, 1161, 1204
MboI GATC 6 cut(s) 151, 553, 808, 1027, 1159, 1202
MboII GAAGA 8 cut(s) 242, 398, 683, 841, 844, 854, 907, 1144
MfeI CAATTG 2 cut(s) 635, 702
MflI RGATCY 3 cut(s) 151, 808, 1159
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 7 cut(s) 98, 537, 635, 646, 702, 778, 1076
MlyI GAGTC 4 cut(s) 317, 398, 855, 1144
MmeI TCCRAC 1 cut(s) 823
Mph1103I ATGCAT 1 cut(s) 743
MseI TTAA 7 cut(s) 63, 90, 96, 111, 356, 426, 1212
MslI CAYNNNNRTG 1 cut(s) 947
MspR9I CCNGG 3 cut(s) 610, 966, 1140
MunI CAATTG 2 cut(s) 635, 702
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 3 cut(s) 610, 966, 1140
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeI CATATG 1 cut(s) 517
NdeII GATC 6 cut(s) 151, 553, 808, 1027, 1159, 1202
NlaIII CATG 6 cut(s) 16, 203, 317, 348, 745, 857
NlaIV GGNNCC 2 cut(s) 6, 1161
NmuCI GTSAC 2 cut(s) 136, 992
NsiI ATGCAT 1 cut(s) 743
NspI RCATGY 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 947
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 4 cut(s) 409, 824, 1220, 1250
PfoI TCCNGGA 1 cut(s) 1138
PkrI GCNGC 2 cut(s) 163, 206
PleI GAGTC 4 cut(s) 316, 397, 854, 1143
PpsI GAGTC 4 cut(s) 316, 397, 854, 1143
PsiI TTATAA 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 3 cut(s) 608, 964, 1138
PspGI CCWGG 3 cut(s) 608, 964, 1138
PspN4I GGNNCC 2 cut(s) 6, 1161
PspPI GGNCC 2 cut(s) 4, 925
PstI CTGCAG 1 cut(s) 1063
PsuI RGATCY 3 cut(s) 151, 808, 1159
RsaI GTAC 2 cut(s) 11, 817
RsaNI GTAC 2 cut(s) 10, 816
RseI CAYNNNNRTG 1 cut(s) 947
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 7 cut(s) 63, 90, 96, 111, 356, 426, 1212
SatI GCNGC 2 cut(s) 162, 205
Sau3AI GATC 6 cut(s) 151, 553, 808, 1027, 1159, 1202
Sau96I GGNCC 2 cut(s) 4, 925
SchI GAGTC 4 cut(s) 317, 398, 855, 1144
ScrFI CCNGG 3 cut(s) 610, 966, 1140
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 2 cut(s) 118, 438
SfcI CTRYAG 1 cut(s) 1059
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 7 cut(s) 98, 537, 635, 646, 702, 778, 1076
SsiI CCGC 1 cut(s) 327
SspI AATATT 1 cut(s) 1177
SspMI CTAG 3 cut(s) 305, 456, 714
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 3 cut(s) 608, 964, 1138
TaaI ACNGT 3 cut(s) 587, 1006, 1121
TasI AATT 7 cut(s) 98, 537, 635, 646, 702, 778, 1076
TfiI GAWTC 4 cut(s) 409, 824, 1220, 1250
Tru1I TTAA 7 cut(s) 63, 90, 96, 111, 356, 426, 1212
Tru9I TTAA 7 cut(s) 63, 90, 96, 111, 356, 426, 1212
TscAI CASTG 1 cut(s) 1198
TseFI GTSAC 2 cut(s) 136, 992
TseI GCWGC 2 cut(s) 161, 204
Tsp45I GTSAC 2 cut(s) 136, 992
TspDTI ATGAA 5 cut(s) 268, 837, 854, 1263, 1272
TspGWI ACGGA 2 cut(s) 35, 907
TspRI CASTG 1 cut(s) 1198
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 646, 1076
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 3 cut(s) 305, 456, 714
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.