Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002666

Physical Location & Seq

Genomic Coordinates Reverse (-)

13496611 .. 13504676

Gene Structure 8066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0087100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTTGATTTTGTTAAGCAGTCACGGAAGTTTGTAATCCTAATTGTCCTCTATTTTAACTCCATTCCTCATGTTCATCCCCTTAACATTGGTGTTCAAGACACAGATACTTCCATCGTTCTGAGTAAAGATTGCAGTAGAAAGTGCGAGTCTGAGTTCTGTACAGTGCCTCCATTGCTAAGATATGGAAAGTACTGTGGGCTTTTGTATAGTGGATGCCCAGGGGAGAAACCCTGTGATGGTCTAGATTCTTGTTGTATGCAGCATGATGCCTGTGTACAATCCAAGAACAATGACTATCTGAGCTCAGAGTGCAGCCAAAATTTCCTAAAATGCATGTCACAATTCAAAAACGCAAAAGGACGGACCTTCAAAGGGAGCAAATGCAAAGTTGAGGATGTTGTGGAAGTTATCACAATTGTGATGGAGGCTGCATTATTTGCTGGAAGATATCTCCACAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

155

Amino Acids

17.38

Weight (kDa)

8.23

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59300 AT3G59300 AT3G59300
fragaria_vesca	FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600
malus_domestica	MD04G1036900.v1.1
prunus_persica	Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1
pyrus_communis	pycom04g03000
rosa_chinensis	RchiOBHm_Chr1g0335941 RchiOBHm_Chr1g0338011 RchiOBHm_Chr1g0338021 RchiOBHm_Chr4g0408711
rosa_laevigata	RLG00000008637
rosa_multiflora	Rmu_sc0005878.1_g000022
rosa_roxburghii	Rroxscaffold_5G00353070
rosa_rugosa	Rorug04G0087000 Rorug04G0087100
rosa_samantha	Rh1DG149600 Rh4AG151100 Rh4BG148500 Rh4CG159200 Rh4DG144100
rosa_wichuraiana	Rw4G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	322
AfaI	GTAC	3 cut(s)	163, 194, 279
AfiI	CCNNNNNNNGG	2 cut(s)	239, 375
AgsI	TTSAA	3 cut(s)	98, 349, 373
AjnI	CCWGG	1 cut(s)	220
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	308
ApeKI	GCWGC	3 cut(s)	262, 315, 431
ApoI	RAATTY	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	274, 327, 418
BccI	CCATC	3 cut(s)	122, 233, 418
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	263, 316, 432
BlsI	GCNGC	3 cut(s)	264, 317, 433
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	206, 259
BsaJI	CCNNGG	2 cut(s)	220, 221
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 375
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	220, 221
BseGI	GGATG	3 cut(s)	76, 221, 403
BseLI	CCNNNNNNNGG	2 cut(s)	239, 375
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	4 cut(s)	113, 144, 293, 321
BseXI	GCAGC	3 cut(s)	274, 327, 418
BsgI	GTGCAG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	239, 375
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp1407I	TGTACA	2 cut(s)	161, 277
BspCNI	CTCAG	4 cut(s)	114, 145, 294, 320
BsrDI	GCAATG	1 cut(s)	173
BsrGI	TGTACA	2 cut(s)	161, 277
BssECI	CCNNGG	2 cut(s)	220, 221
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	166, 197
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstAUI	TGTACA	2 cut(s)	161, 277
BstDEI	CTNAG	5 cut(s)	122, 153, 179, 302, 307
BstF5I	GGATG	3 cut(s)	76, 221, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 312, 440
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	274, 327, 418
BtsCI	GGATG	3 cut(s)	76, 221, 403
BtsIMutI	CAGTG	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	366
Csp6I	GTAC	3 cut(s)	162, 193, 278
CspCI	CAANNNNNGTGG	1 cut(s)	446
CviAII	CATG	3 cut(s)	71, 266, 337
CviJI	RGCY	4 cut(s)	202, 306, 318, 431
CviKI_1	RGCY	4 cut(s)	202, 306, 318, 431
CviQI	GTAC	3 cut(s)	162, 193, 278
DdeI	CTNAG	5 cut(s)	122, 153, 179, 302, 307
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	3 cut(s)	74, 269, 340
FaiI	YATR	6 cut(s)	72, 186, 210, 260, 267, 338
FatI	CATG	3 cut(s)	70, 265, 336
Fnu4HI	GCNGC	3 cut(s)	263, 316, 432
FokI	GGATG	3 cut(s)	63, 228, 410
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	263, 316, 432
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	3 cut(s)	263, 316, 432
Hin1II	CATG	3 cut(s)	74, 269, 340
HinfI	GANTC	2 cut(s)	149, 248
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	4 cut(s)	123, 154, 303, 310
Hpy188III	TCNNGA	2 cut(s)	98, 245
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	2 cut(s)	166, 197
HpyCH4V	TGCA	6 cut(s)	135, 262, 315, 336, 387, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 312, 440
HpyF3I	CTNAG	5 cut(s)	122, 153, 179, 302, 307
Hsp92II	CATG	3 cut(s)	74, 269, 340
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	5 cut(s)	207, 234, 247, 286, 429
Lsp1109I	GCAGC	3 cut(s)	274, 327, 418
LweI	GCATC	2 cut(s)	206, 259
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	21, 339
MboII	GAAGA	1 cut(s)	459
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	4 cut(s)	42, 322, 344, 417
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	5 cut(s)	59, 78, 180, 388, 421
Mph1103I	ATGCAT	1 cut(s)	338
MseI	TTAA	3 cut(s)	15, 57, 84
MslI	CAYNNNNRTG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	175, 312, 440
NlaIII	CATG	3 cut(s)	74, 269, 340
NmuCI	GTSAC	2 cut(s)	21, 339
NsiI	ATGCAT	1 cut(s)	338
NspI	RCATGY	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	419
PasI	CCCWGGG	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	264, 317, 433
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	366
RsaI	GTAC	3 cut(s)	163, 194, 279
RsaNI	GTAC	3 cut(s)	162, 193, 278
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	15, 57, 84
SatI	GCNGC	3 cut(s)	263, 316, 432
Sau96I	GGNCC	1 cut(s)	366
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	3 cut(s)	308, 371, 466
SfaNI	GCATC	2 cut(s)	206, 259
SinI	GGWCC	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	42, 322, 344, 417
SspMI	CTAG	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	166, 197
TasI	AATT	4 cut(s)	42, 322, 344, 417
TatI	WGTACW	3 cut(s)	161, 192, 277
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	3 cut(s)	15, 57, 84
Tru9I	TTAA	3 cut(s)	15, 57, 84
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	2 cut(s)	21, 339
TseI	GCWGC	3 cut(s)	262, 315, 431
Tsp45I	GTSAC	2 cut(s)	21, 339
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	2 cut(s)	40, 379
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.