Prupe.1G185800_v2.0.a1

endonuclease activity

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
16877938 .. 16887314
9377 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G185800.4

Sequence Viewer

Length: 1395 bp
ATGGCAATTGCAGCTGCTACTTCTCTTCCCTTCGGTTCTTCTCATTGCCATTCATGCCATGCAGAAAGGGTTTGTTGTTCTACAACACATGGGATCTCGAACAGTTGGATGAAACCTCCTTCTGATGGTCGAAGAGCCCTTGATCTTCCAGGCGTAAGTTTTAATTGCAGGAATCCTTTACTTGGATCAACCCAATTCCACTGGCTGTCTATTGGACATGACCTTTGCCTTTCCAAAGTTTTGGTTGCTGCAGATTACTCAGATTCTGTTCCTGATTCCTCTAGTTATATTACTAACCAAGGTTATCATCCTCTTGAAGAAGTGAAAGTCTGCAAAATGGTCCGGGACACCAAACTCACTTCTGCTGAAATAGCACGAACAACAGTTGAGGCGAACTGCAGTGCTTTGCTGGTGTTCCCGGGGAAGATACACTGTGAACCACATGAACAAATTTCCTGGGCTGATTTTGAATATGTTATCGACGACTATGGAGATTTATATTTTGAAATTTTTGATGATGCAAACTTGTTAGAGGATCCTGCAGCAAGTAACCCTGTGAATGCTTTGTTTGGGATGGATATCCCTACATATGATGATGGAAGAATAGCTGGTGAGTTCAACATTCTAGGTGGTGGAAATAGTGATGAAATCCCTTTTGATGATGATTATCTCGAGGTTGTAGAATCTGAAGTTTCTGATGTTCTAGACTGGGGGTTGCCAGATACTTCTAGCTCGATTCATCCTATTTATTTCGCGAAGTGCTTGACAAAGGTCATCAACATCGAATACCATAAAAAAATGGATCATCCATCAAATGGCGTCTCTATTTTAGGATGCCTCAGACCTGCTTTTGCTGATGAAGAATTCTATGTAAGAAGACTATTTCATTATGAAGATAGCGATGGATACAACTCGGACTGGAAAGATGGAAAAAGTTTGAGCCTTAGTTCCAAAAGTGATCGAATCAAGACCTGCTCTACTCTCTACAGGTTGGAGATAATGAGAATAGAGTTGTTCTCTGTATATGGTGTTCAGTCTACAATTAGTTTGGAAGATTTTCAAGATGCAGAACCTGATGTTCTTGTAAACGCTACCTTGGAAATTGTAGATCGCTTCAATGAAAGAGGCATTAGGTGTGATGTTGCTCTTAAAGCTTTATGCAAAAGGAAAGGACTTCATGTTGAGGGAGCTCATTTGATTGGGGTTGACAGTCTTGGAATGGATGTTAGAGTCTTCTCAGGGTTGGAAGTACAAACTCATCGTTTTCCCTTCAAAGTCCGGGCTACATCTGAAGTTGCAGCTGAAAAACAGATTCAGCAACTTTTGTTCCCACGTTCTCGCCGTAAAAAGTTGAAAAGTCAGGGGAATAATTTTAGGGGCGTCGAGTTATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

465

Amino Acids

51.87

Weight (kDa)

5.14

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 853, 980
AccB7I CCANNNNNTGG 1 cut(s) 815
AccI GTMKAC 1 cut(s) 1037
AccII CGCG 1 cut(s) 755
AclWI GGATC 5 cut(s) 101, 193, 530, 543, 810
AcsI RAATTY 3 cut(s) 450, 507, 863
AcuI CTGAAG 2 cut(s) 708, 1311
AcyI GRCGYC 2 cut(s) 819, 1380
AfaI GTAC 1 cut(s) 1251
AfiI CCNNNNNNNGG 3 cut(s) 125, 182, 815
AgsI TTSAA 8 cut(s) 317, 470, 506, 619, 1061, 1117, 1273, 1354
AjnI CCWGG 2 cut(s) 148, 455
AluBI AGCT 6 cut(s) 14, 608, 732, 1154, 1190, 1301
AluI AGCT 6 cut(s) 14, 608, 732, 1154, 1190, 1301
Alw21I GWGCWC 1 cut(s) 1192
Alw26I GTCTC 1 cut(s) 826
AlwI GGATC 5 cut(s) 101, 193, 530, 543, 810
AlwNI CAGNNNCTG 2 cut(s) 266, 1073
Ama87I CYCGRG 2 cut(s) 418, 671
ApeKI GCWGC 5 cut(s) 11, 14, 248, 542, 1298
ApoI RAATTY 3 cut(s) 450, 507, 863
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
Asp700I GAANNNNTTC 1 cut(s) 1056
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 4 cut(s) 344, 419, 420, 1280
AsuHPI GGTGA 1 cut(s) 623
AvaI CYCGRG 2 cut(s) 418, 671
AvaII GGWCC 1 cut(s) 340
BamHI GGATCC 1 cut(s) 535
BanII GRGCYC 2 cut(s) 139, 1192
BbsI GAAGAC 2 cut(s) 883, 1225
Bbv12I GWGCWC 1 cut(s) 1192
BbvI GCAGC 4 cut(s) 23, 235, 554, 1310
BccI CCATC 6 cut(s) 119, 568, 590, 817, 896, 920
BceAI ACGGC 1 cut(s) 1326
BciT130I CCWGG 2 cut(s) 150, 457
BciVI GTATCC 1 cut(s) 899
BcnI CCSGG 4 cut(s) 344, 419, 420, 1280
BcoDI GTCTC 1 cut(s) 826
BfaI CTAG 4 cut(s) 282, 626, 704, 729
BfmI CTRYAG 4 cut(s) 249, 397, 540, 985
BfuAI ACCTGC 2 cut(s) 853, 980
BfuI GTATCC 1 cut(s) 899
BisI GCNGC 5 cut(s) 12, 15, 249, 543, 1299
BlsI GCNGC 5 cut(s) 13, 16, 250, 544, 1300
Bme1390I CCNGG 6 cut(s) 150, 344, 419, 420, 457, 1280
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 2 cut(s) 418, 671
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 6 cut(s) 150, 344, 419, 420, 457, 1280
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 3 cut(s) 508, 824, 1054
BmuI ACTGGG 1 cut(s) 718
BoxI GACNNNNGTC 1 cut(s) 770
BpiI GAAGAC 2 cut(s) 883, 1225
BplI GAGNNNNNCTC 2 cut(s) 1001, 1033
BpuMI CCSGG 4 cut(s) 344, 419, 420, 1280
BsaBI GATNNNNATC 2 cut(s) 578, 666
BsaHI GRCGYC 2 cut(s) 819, 1380
BsaJI CCNNGG 5 cut(s) 298, 418, 419, 456, 1095
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 182, 815
Bse1I ACTGG 3 cut(s) 206, 713, 923
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 2 cut(s) 578, 666
BseBI CCWGG 2 cut(s) 150, 457
BseDI CCNNGG 5 cut(s) 298, 418, 419, 456, 1095
BseGI GGATG 7 cut(s) 114, 307, 579, 739, 805, 839, 1228
BseJI GATNNNNATC 2 cut(s) 578, 666
BseLI CCNNNNNNNGG 3 cut(s) 125, 182, 815
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 3 cut(s) 273, 853, 1251
BseNI ACTGG 3 cut(s) 206, 713, 923
BseXI GCAGC 4 cut(s) 23, 235, 554, 1310
Bsh1236I CGCG 1 cut(s) 755
BsiHKAI GWGCWC 1 cut(s) 1192
BsiHKCI CYCGRG 2 cut(s) 418, 671
BsiSI CCGG 3 cut(s) 343, 419, 1279
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 3 cut(s) 125, 182, 815
BsmAI GTCTC 1 cut(s) 826
BsmBI CGTCTC 1 cut(s) 826
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 565
BsoBI CYCGRG 2 cut(s) 418, 671
Bsp1286I GDGCHC 2 cut(s) 139, 1192
Bsp143I GATC 7 cut(s) 93, 142, 185, 535, 802, 958, 1108
Bsp68I TCGCGA 1 cut(s) 755
BspCNI CTCAG 3 cut(s) 272, 852, 1250
BspFNI CGCG 1 cut(s) 755
BspLI GGNNCC 1 cut(s) 537
BspMAI CTGCAG 3 cut(s) 253, 401, 544
BspMI ACCTGC 2 cut(s) 853, 980
BspPI GGATC 5 cut(s) 101, 193, 530, 543, 810
BspQI GCTCTTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 3 cut(s) 206, 713, 923
BssECI CCNNGG 5 cut(s) 298, 418, 419, 456, 1095
BssMI GATC 7 cut(s) 93, 142, 185, 535, 802, 958, 1108
BssNI GRCGYC 2 cut(s) 819, 1380
BssT1I CCWWGG 2 cut(s) 298, 1095
Bst2UI CCWGG 2 cut(s) 150, 457
Bst4CI ACNGT 4 cut(s) 104, 385, 434, 1211
Bst6I CTCTTC 2 cut(s) 30, 127
BstACI GRCGYC 2 cut(s) 819, 1380
BstDEI CTNAG 4 cut(s) 259, 839, 944, 1237
BstF5I GGATG 7 cut(s) 114, 307, 579, 739, 805, 839, 1228
BstFNI CGCG 1 cut(s) 755
BstKTI GATC 7 cut(s) 96, 145, 188, 538, 805, 961, 1111
BstMAI GTCTC 1 cut(s) 826
BstMBI GATC 7 cut(s) 93, 142, 185, 535, 802, 958, 1108
BstMWI GCNNNNNNNGC 4 cut(s) 11, 54, 371, 1151
BstNI CCWGG 2 cut(s) 150, 457
BstPAI GACNNNNGTC 1 cut(s) 770
BstSCI CCNGG 6 cut(s) 148, 342, 417, 418, 455, 1278
BstSFI CTRYAG 4 cut(s) 249, 397, 540, 985
BstUI CGCG 1 cut(s) 755
BstV1I GCAGC 4 cut(s) 23, 235, 554, 1310
BstV2I GAAGAC 2 cut(s) 883, 1225
BstX2I RGATCY 2 cut(s) 93, 535
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 2 cut(s) 93, 535
BsuI GTATCC 1 cut(s) 899
BtgZI GCGATG 1 cut(s) 915
BtsCI GGATG 7 cut(s) 114, 307, 579, 739, 805, 839, 1228
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 3 cut(s) 199, 406, 430
BtuMI TCGCGA 1 cut(s) 755
BveI ACCTGC 2 cut(s) 853, 980
CaiI CAGNNNCTG 2 cut(s) 266, 1073
Cfr13I GGNCC 1 cut(s) 340
Cfr9I CCCGGG 1 cut(s) 418
CseI GACGC 2 cut(s) 808, 1369
Csp6I GTAC 1 cut(s) 1250
CviAII CATG 6 cut(s) 54, 59, 89, 218, 443, 1178
CviQI GTAC 1 cut(s) 1250
DdeI CTNAG 4 cut(s) 259, 839, 944, 1237
DpnI GATC 7 cut(s) 95, 144, 187, 537, 804, 960, 1110
DpnII GATC 7 cut(s) 93, 142, 185, 535, 802, 958, 1108
Eam1104I CTCTTC 2 cut(s) 30, 127
EarI CTCTTC 2 cut(s) 30, 127
Ecl136II GAGCTC 1 cut(s) 1190
Eco130I CCWWGG 2 cut(s) 298, 1095
Eco24I GRGCYC 2 cut(s) 139, 1192
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 1190
Eco57I CTGAAG 2 cut(s) 708, 1311
Eco88I CYCGRG 2 cut(s) 418, 671
EcoICRI GAGCTC 1 cut(s) 1190
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 148, 455
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 2 cut(s) 298, 1095
EcoT38I GRGCYC 2 cut(s) 139, 1192
ErhI CCWWGG 2 cut(s) 298, 1095
Esp3I CGTCTC 1 cut(s) 826
FaeI CATG 6 cut(s) 57, 62, 92, 221, 446, 1181
FaqI GGGAC 1 cut(s) 359
FatI CATG 6 cut(s) 53, 58, 88, 217, 442, 1177
FauNDI CATATG 1 cut(s) 589
FblI GTMKAC 1 cut(s) 1037
Fnu4HI GCNGC 5 cut(s) 12, 15, 249, 543, 1299
FokI GGATG 7 cut(s) 121, 294, 586, 726, 792, 846, 1235
FriOI GRGCYC 2 cut(s) 139, 1192
Fsp4HI GCNGC 5 cut(s) 12, 15, 249, 543, 1299
FspBI CTAG 4 cut(s) 282, 626, 704, 729
GluI GCNGC 5 cut(s) 12, 15, 249, 543, 1299
HapII CCGG 3 cut(s) 343, 419, 1279
HgaI GACGC 2 cut(s) 808, 1369
Hin1I GRCGYC 2 cut(s) 819, 1380
Hin1II CATG 6 cut(s) 57, 62, 92, 221, 446, 1181
HincII GTYRAC 1 cut(s) 1207
HindII GTYRAC 1 cut(s) 1207
HindIII AAGCTT 1 cut(s) 1152
HinfI GANTC 8 cut(s) 172, 263, 275, 683, 736, 963, 1230, 1312
HpaII CCGG 3 cut(s) 343, 419, 1279
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 4 cut(s) 437, 1038, 1087, 1207
Hpy188I TCNGA 7 cut(s) 124, 262, 688, 697, 842, 916, 1291
Hpy188III TCNNGA 8 cut(s) 97, 272, 314, 671, 704, 754, 967, 1061
Hpy8I GTNNAC 4 cut(s) 437, 1038, 1087, 1207
Hpy99I CGWCG 2 cut(s) 485, 1385
HpyAV CCTTC 3 cut(s) 40, 129, 1279
HpyCH4III ACNGT 4 cut(s) 104, 385, 434, 1211
HpyCH4IV ACGT 1 cut(s) 1333
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 54, 371, 1151
HpyF3I CTNAG 4 cut(s) 259, 839, 944, 1237
HpySE526I ACGT 1 cut(s) 1333
Hsp92I GRCGYC 2 cut(s) 819, 1380
Hsp92II CATG 6 cut(s) 57, 62, 92, 221, 446, 1181
Kzo9I GATC 7 cut(s) 93, 142, 185, 535, 802, 958, 1108
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 1187
Lsp1109I GCAGC 4 cut(s) 23, 235, 554, 1310
LweI GCATC 3 cut(s) 508, 824, 1054
MaeI CTAG 4 cut(s) 282, 626, 704, 729
MaeII ACGT 1 cut(s) 1333
MaeIII GTNAC 1 cut(s) 548
MalI GATC 7 cut(s) 95, 144, 187, 537, 804, 960, 1110
MboI GATC 7 cut(s) 93, 142, 185, 535, 802, 958, 1108
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 93, 535
MhlI GDGCHC 2 cut(s) 139, 1192
MluCI AATT 9 cut(s) 6, 163, 194, 450, 507, 863, 1041, 1101, 1369
MlyI GAGTC 1 cut(s) 1239
MmeI TCCRAC 3 cut(s) 86, 972, 1224
MnlI CCTC 9 cut(s) 126, 289, 321, 382, 526, 667, 848, 1118, 1177
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 2 cut(s) 162, 1149
MspA1I CMGCKG 2 cut(s) 14, 1301
MspI CCGG 3 cut(s) 343, 419, 1279
MspR9I CCNGG 6 cut(s) 150, 344, 419, 420, 457, 1280
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 2 cut(s) 150, 457
MvnI CGCG 1 cut(s) 755
MwoI GCNNNNNNNGC 4 cut(s) 11, 54, 371, 1151
NciI CCSGG 4 cut(s) 344, 419, 420, 1280
NdeI CATATG 1 cut(s) 589
NdeII GATC 7 cut(s) 93, 142, 185, 535, 802, 958, 1108
NlaIII CATG 6 cut(s) 57, 62, 92, 221, 446, 1181
NlaIV GGNNCC 1 cut(s) 537
NruI TCGCGA 1 cut(s) 755
PaeR7I CTCGAG 1 cut(s) 671
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 1339
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 7 cut(s) 172, 263, 275, 683, 736, 963, 1312
PflMI CCANNNNNTGG 1 cut(s) 815
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 5 cut(s) 13, 16, 250, 544, 1300
PleI GAGTC 1 cut(s) 1238
PpsI GAGTC 1 cut(s) 1238
PshAI GACNNNNGTC 1 cut(s) 770
Psp124BI GAGCTC 1 cut(s) 1192
Psp6I CCWGG 2 cut(s) 148, 455
PspGI CCWGG 2 cut(s) 148, 455
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 340
PsrI GAACNNNNNNTAC 2 cut(s) 1014, 1046
PstI CTGCAG 3 cut(s) 253, 401, 544
PstNI CAGNNNCTG 2 cut(s) 266, 1073
PsuI RGATCY 2 cut(s) 93, 535
PvuII CAGCTG 2 cut(s) 14, 1301
RruI TCGCGA 1 cut(s) 755
RsaI GTAC 1 cut(s) 1251
RsaNI GTAC 1 cut(s) 1250
SacI GAGCTC 1 cut(s) 1192
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 162, 1149
SatI GCNGC 5 cut(s) 12, 15, 249, 543, 1299
Sau3AI GATC 7 cut(s) 93, 142, 185, 535, 802, 958, 1108
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 1 cut(s) 1239
ScrFI CCNGG 6 cut(s) 150, 344, 419, 420, 457, 1280
SduI GDGCHC 2 cut(s) 139, 1192
SfaNI GCATC 3 cut(s) 508, 824, 1054
SfcI CTRYAG 4 cut(s) 249, 397, 540, 985
Sfr274I CTCGAG 1 cut(s) 671
SinI GGWCC 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 671
SmaI CCCGGG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
Sse9I AATT 9 cut(s) 6, 163, 194, 450, 507, 863, 1041, 1101, 1369
SspMI CTAG 4 cut(s) 282, 626, 704, 729
SstI GAGCTC 1 cut(s) 1192
StyD4I CCNGG 6 cut(s) 148, 342, 417, 418, 455, 1278
StyI CCWWGG 2 cut(s) 298, 1095
TaaI ACNGT 4 cut(s) 104, 385, 434, 1211
TaiI ACGT 1 cut(s) 1336
TaqI TCGA 8 cut(s) 98, 130, 480, 672, 734, 783, 961, 1383
TasI AATT 9 cut(s) 6, 163, 194, 450, 507, 863, 1041, 1101, 1369
TatI WGTACW 1 cut(s) 1249
TfiI GAWTC 7 cut(s) 172, 263, 275, 683, 736, 963, 1312
Tru1I TTAA 2 cut(s) 162, 1149
Tru9I TTAA 2 cut(s) 162, 1149
TscAI CASTG 3 cut(s) 206, 406, 437
TseI GCWGC 5 cut(s) 11, 14, 248, 542, 1298
TspMI CCCGGG 1 cut(s) 418
TspRI CASTG 3 cut(s) 206, 406, 437
Van91I CCANNNNNTGG 1 cut(s) 815
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 3 cut(s) 450, 507, 863
XbaI TCTAGA 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 671
XmaI CCCGGG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 1037
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 4 cut(s) 282, 626, 704, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.