Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002666

Physical Location & Seq

Genomic Coordinates Forward (+)

29971196 .. 29976048

Gene Structure 4853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATGATGATATGTATTATATCTATTTGCGGGACAAAATACCTAGAGTCAACTATCAATGCTAACGACAGTGCTTTGCTGGTTTTCCCTGGGAAGATACACTCTGAACCACATGAACAAATTTCTTGGGCTGAGTTTCAATATGTTATCGACGATTATGGAGGTCTTGTGAATCCTCATCTTGAAAATGCTTTGTTTGGAATGGATATCCCTACACACAACAATGGAAGAATAGCTGGAGGATTCAGCATTCTAGATGACCAGAACAGTGACGATATTCCTTTTGATGATCATTATCTAGAGGTTGTACAATCTGAAGCTTTTGATGTTCTGGACTGGGAGATACCTGATGCTTCTACCTTGATTCATCCCATTTATTTTGCAAAGTGCTTAACAAAGTCCACAATTAGCCTGCAAGATTTTCAAGATGCGGAACCTGATTTTCTTTATAAAATCTATGTAGAACGGTTCAACGAAAGAGGTATTAGATGCGATGTTGCTCTTAAAGCTTTATGCAAAAGAAAAGGACTTCAAGTTGAGGGAGCTCACTTGATGGGGGTGATACGCTCAAAGCAGCATATAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.06

Weight (kDa)

4.79

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59300 AT3G59300 AT3G59300
fragaria_vesca	FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600
malus_domestica	MD04G1036900.v1.1
prunus_persica	Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1
pyrus_communis	pycom04g03000
rosa_chinensis	RchiOBHm_Chr1g0335941 RchiOBHm_Chr1g0338011 RchiOBHm_Chr1g0338021 RchiOBHm_Chr4g0408711
rosa_laevigata	RLG00000008637
rosa_multiflora	Rmu_sc0005878.1_g000022
rosa_roxburghii	Rroxscaffold_5G00353070
rosa_rugosa	Rorug04G0087000 Rorug04G0087100
rosa_samantha	Rh1DG149600 Rh4AG151100 Rh4BG148500 Rh4CG159200 Rh4DG144100
rosa_wichuraiana	Rw4G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AciI	CCGC	2 cut(s)	30, 431
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	309
AgsI	TTSAA	5 cut(s)	140, 185, 425, 472, 533
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	4 cut(s)	236, 320, 509, 545
AluI	AGCT	4 cut(s)	236, 320, 509, 545
Alw21I	GWGCWC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	547
BccI	CCATC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	90
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	3 cut(s)	44, 254, 299
BisI	GCNGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	3 cut(s)	340, 418, 479
BmuI	ACTGGG	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	88, 89
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bse1I	ACTGG	1 cut(s)	341
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	88, 89
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	2 cut(s)	30, 431
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	88, 89
BssMI	GATC	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	71, 269, 468
BstAUI	TGTACA	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	76, 274
Cac8I	GCNNGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	6 cut(s)	131, 236, 320, 411, 509, 545
CviKI_1	RGCY	6 cut(s)	131, 236, 320, 411, 509, 545
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	547
Eco32I	GATATC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	547
FaeI	CATG	1 cut(s)	116
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	575
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	575
FspBI	CTAG	3 cut(s)	44, 254, 299
GluI	GCNGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	2 cut(s)	318, 507
HinfI	GANTC	4 cut(s)	47, 172, 243, 364
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	51, 402
Hpy188I	TCNGA	2 cut(s)	106, 316
Hpy188III	TCNNGA	5 cut(s)	182, 254, 299, 332, 425
Hpy8I	GTNNAC	2 cut(s)	51, 402
Hpy99I	CGWCG	1 cut(s)	155
HpyCH4III	ACNGT	3 cut(s)	71, 269, 468
HpyCH4V	TGCA	3 cut(s)	383, 415, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	542
LweI	GCATC	3 cut(s)	340, 418, 479
MaeI	CTAG	3 cut(s)	44, 254, 299
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	2 cut(s)	106, 240
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	3 cut(s)	120, 405, 582
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	155, 186, 233, 295, 473, 532
MseI	TTAA	3 cut(s)	392, 504, 586
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	506
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	269
PasI	CCCWGGG	1 cut(s)	89
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	172, 243, 364
PkrI	GCNGC	1 cut(s)	576
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	435
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	547
SaqAI	TTAA	3 cut(s)	392, 504, 586
SatI	GCNGC	1 cut(s)	575
Sau3AI	GATC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	3 cut(s)	340, 418, 479
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	120, 405, 582
SsiI	CCGC	2 cut(s)	30, 431
SspMI	CTAG	3 cut(s)	44, 254, 299
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	71, 269, 468
TaqI	TCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	120, 405, 582
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	3 cut(s)	172, 243, 364
Tru1I	TTAA	3 cut(s)	392, 504, 586
Tru9I	TTAA	3 cut(s)	392, 504, 586
TscAI	CASTG	2 cut(s)	76, 274
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	574
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	129, 356
TspRI	CASTG	2 cut(s)	76, 274
XapI	RAATTY	1 cut(s)	120
XbaI	TCTAGA	2 cut(s)	253, 298
XspI	CTAG	3 cut(s)	44, 254, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.