Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002666

Physical Location & Seq

Genomic Coordinates Reverse (-)

34998361 .. 35006794

Gene Structure 8434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG159200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCAATTGCAGCTGCTTCTTCTCTTCCCTTGGGTCATTCGCATTGCCATTCATGCCACACAGAAGGAGTTTGTTGTTCAACAAGACATGGGATCTCAAGCAGTTGGATGAAACCTCCTTTTGATGGTCGAAGATACCCTGATCCTCTGGGTGTAAGTTTGAAGTGCAGGAATCCGTTAGTTGGACCAACACAATTCCACTGGCTGTCTATTGGACATGGTCTTTGCCTTTCCAAAGTTTCGGTTGCTGCGGATTTCTCGGATTCTGCTCCTGAATCTTCTAGTTATATGACTAACCAGGGTTATCATCCTCTTGAGGAGTTGAAAGCGTGCAAAATGGTCCGAGACACTAAACTCACCTCTGCTGAAATAGCAAGAACAACAGTCGAGGCTAACGACAGTGCTTTGCTGGTTTTCCCTGGGAAGATACACTCTGAACCACATGAACAAATTTCTTGGGCTGAGTTTCAATATGTTATCGATGATTATGGAGATTTATATTTTGAACTGTTTGATGATGCGAACATATTAGAAGATCCTACAGCAAGTAACCCTGTGAATGCTTTGTTTGGAATGGATATCCCTGTACACAACAATGGAAGAATAACTGGAGGATTCAGCATTCTAGATGACCAGAACAGTGACGATATTCCTTTTGATGATGATTATCTAGAGGTTGTAGAATCTGAAGCTTTTGATGTTCTAGACTGGGAGATACCTGATGCTTCTACCTTGATTCATCCCATTTATTTTGCAAAGTGCTTAACAAAGGCCATCAATATCAGACATGACAGAAAAATGGATCACCCATCAAATGGTGTTTCTATTTTAGGATGCCTCATACCTGCTTTTGCTGATGAAGAATTTTATGTAAGAAGACTATTTCATTATGAGGATAGCGACTATTACAACTCGGATGAGAAAGGTGGAAAAGGAGTGAGCATTAGTTCCAAAAGTGACCGAAGCAAGAATTGCTCAACACTCTACCGGTTGGAGATAATGAGAATAGAGTTGTTCTCGGTATATGGTGTTCAGTCCACAATTAACCTACAAGATTTTCAAGATGCGGAACCTGATTTTCTTATAAACTCTATCTCGGATATTGTAGAACGGTTCAACGAAAGAGGTATTAGATGCGATGTTGCTCTTAAAGCTTTATGCAAAAGAAAAGGACTTCAAGTTGAGGTAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

44.5

Weight (kDa)

4.89

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59300 AT3G59300 AT3G59300
fragaria_vesca	FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600
malus_domestica	MD04G1036900.v1.1
prunus_persica	Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1
pyrus_communis	pycom04g03000
rosa_chinensis	RchiOBHm_Chr1g0335941 RchiOBHm_Chr1g0338011 RchiOBHm_Chr1g0338021 RchiOBHm_Chr4g0408711
rosa_laevigata	RLG00000008637
rosa_multiflora	Rmu_sc0005878.1_g000022
rosa_roxburghii	Rroxscaffold_5G00353070
rosa_rugosa	Rorug04G0087000 Rorug04G0087100
rosa_samantha	Rh1DG149600 Rh4AG151100 Rh4BG148500 Rh4CG159200 Rh4DG144100
rosa_wichuraiana	Rw4G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1085
Acc36I	ACCTGC	1 cut(s)	853
AccB7I	CCANNNNNTGG	1 cut(s)	815
AciI	CCGC	2 cut(s)	251, 1067
AclWI	GGATC	4 cut(s)	101, 137, 530, 810
AcsI	RAATTY	2 cut(s)	450, 863
AcuI	CTGAAG	1 cut(s)	708
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	3 cut(s)	125, 182, 815
AgeI	ACCGGT	1 cut(s)	987
AgsI	TTSAA	8 cut(s)	81, 163, 325, 470, 506, 1061, 1117, 1178
AjnI	CCWGG	2 cut(s)	297, 418
AluBI	AGCT	3 cut(s)	14, 692, 1154
AluI	AGCT	3 cut(s)	14, 692, 1154
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	4 cut(s)	101, 137, 530, 810
AoxI	GGCC	1 cut(s)	771
ApeKI	GCWGC	3 cut(s)	11, 14, 248
ApoI	RAATTY	2 cut(s)	450, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AsiGI	ACCGGT	1 cut(s)	987
AspS9I	GGNCC	2 cut(s)	185, 340
AsuHPI	GGTGA	2 cut(s)	349, 797
AvaII	GGWCC	2 cut(s)	185, 340
BbsI	GAAGAC	1 cut(s)	883
BbvI	GCAGC	2 cut(s)	23, 235
BccI	CCATC	3 cut(s)	119, 782, 817
BciT130I	CCWGG	2 cut(s)	299, 420
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	4 cut(s)	282, 626, 671, 704
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	853
BisI	GCNGC	3 cut(s)	12, 15, 249
BlsI	GCNGC	3 cut(s)	13, 16, 250
Bme1390I	CCNGG	2 cut(s)	299, 420
Bme18I	GGWCC	2 cut(s)	185, 340
BmgT120I	GGNCC	2 cut(s)	185, 340
BmiI	GGNNCC	1 cut(s)	1071
BmrFI	CCNGG	2 cut(s)	299, 420
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	5 cut(s)	508, 712, 824, 1054, 1124
BmuI	ACTGGG	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	883
BplI	GAGNNNNNCTC	2 cut(s)	1001, 1033
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	2 cut(s)	82, 335
Bsa29I	ATCGAT	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	4 cut(s)	30, 298, 418, 419
BsaWI	WCCGGW	1 cut(s)	987
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 182, 815
Bse118I	RCCGGY	1 cut(s)	987
Bse1I	ACTGG	3 cut(s)	206, 613, 713
Bse3DI	GCAATG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	299, 420
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	30, 298, 418, 419
BseGI	GGATG	5 cut(s)	114, 307, 739, 839, 922
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	3 cut(s)	125, 182, 815
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	206, 613, 713
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	23, 235
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	773
BshTI	ACCGGT	1 cut(s)	987
BshVI	ATCGAT	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	988
BslI	CCNNNNNNNGG	3 cut(s)	125, 182, 815
BsmAI	GTCTC	1 cut(s)	339
BsmI	GAATGC	2 cut(s)	565, 621
BsnI	GGCC	1 cut(s)	773
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	4 cut(s)	93, 142, 535, 802
BspACI	CCGC	2 cut(s)	251, 1067
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	1 cut(s)	454
BspDI	ATCGAT	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	1071
BspMI	ACCTGC	1 cut(s)	853
BspPI	GGATC	4 cut(s)	101, 137, 530, 810
BsrDI	GCAATG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	987
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	206, 613, 713
BssAI	RCCGGY	1 cut(s)	987
BssECI	CCNNGG	4 cut(s)	30, 298, 418, 419
BssMI	GATC	4 cut(s)	93, 142, 535, 802
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	299, 420
Bst4CI	ACNGT	5 cut(s)	385, 401, 510, 641, 1113
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	972
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	5 cut(s)	114, 307, 739, 839, 922
BstKTI	GATC	4 cut(s)	96, 145, 538, 805
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	4 cut(s)	93, 142, 535, 802
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 54, 371, 972, 1151
BstNI	CCWGG	2 cut(s)	299, 420
BstSCI	CCNGG	2 cut(s)	297, 418
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	23, 235
BstV2I	GAAGAC	1 cut(s)	883
BstX2I	RGATCY	2 cut(s)	93, 535
BstYI	RGATCY	2 cut(s)	93, 535
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	773
BsuTUI	ATCGAT	1 cut(s)	480
BtgZI	GCGATG	1 cut(s)	1152
BtsCI	GGATG	5 cut(s)	114, 307, 739, 839, 922
BtsIMutI	CAGTG	3 cut(s)	199, 406, 646
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	987
Cfr13I	GGNCC	2 cut(s)	185, 340
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	587
CspAI	ACCGGT	1 cut(s)	987
CviAII	CATG	5 cut(s)	54, 89, 218, 443, 788
CviJI	RGCY	7 cut(s)	14, 205, 392, 461, 692, 773, 1154
CviKI_1	RGCY	7 cut(s)	14, 205, 392, 461, 692, 773, 1154
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	4 cut(s)	95, 144, 537, 804
DpnII	GATC	4 cut(s)	93, 142, 535, 802
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	580
Eco47I	GGWCC	2 cut(s)	185, 340
Eco57I	CTGAAG	1 cut(s)	708
EcoRII	CCWGG	2 cut(s)	297, 418
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	5 cut(s)	57, 92, 221, 446, 791
FatI	CATG	5 cut(s)	53, 88, 217, 442, 787
Fnu4HI	GCNGC	3 cut(s)	12, 15, 249
FokI	GGATG	5 cut(s)	121, 294, 726, 846, 929
Fsp4HI	GCNGC	3 cut(s)	12, 15, 249
FspBI	CTAG	4 cut(s)	282, 626, 671, 704
GluI	GCNGC	3 cut(s)	12, 15, 249
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	773
HapII	CCGG	1 cut(s)	988
Hin1II	CATG	5 cut(s)	57, 92, 221, 446, 791
HindIII	AAGCTT	2 cut(s)	690, 1152
HinfI	GANTC	6 cut(s)	172, 263, 275, 615, 683, 736
HpaII	CCGG	1 cut(s)	988
HphI	GGTGA	2 cut(s)	349, 797
Hpy166II	GTNNAC	2 cut(s)	589, 1038
Hpy188I	TCNGA	7 cut(s)	262, 344, 436, 688, 785, 916, 1099
Hpy188III	TCNNGA	6 cut(s)	272, 314, 626, 671, 704, 1061
Hpy8I	GTNNAC	2 cut(s)	589, 1038
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	5 cut(s)	385, 401, 510, 641, 1113
HpyCH4V	TGCA	5 cut(s)	11, 168, 333, 755, 1161
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 54, 371, 972, 1151
HpyF3I	CTNAG	1 cut(s)	462
Hsp92II	CATG	5 cut(s)	57, 92, 221, 446, 791
Kzo9I	GATC	4 cut(s)	93, 142, 535, 802
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	2 cut(s)	23, 235
LweI	GCATC	5 cut(s)	508, 712, 824, 1054, 1124
MaeI	CTAG	4 cut(s)	282, 626, 671, 704
MaeIII	GTNAC	4 cut(s)	548, 641, 956, 1186
MalI	GATC	4 cut(s)	95, 144, 537, 804
MboI	GATC	4 cut(s)	93, 142, 535, 802
MboII	GAAGA	9 cut(s)	12, 17, 144, 270, 436, 545, 612, 872, 888
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	2 cut(s)	93, 535
MluCI	AATT	7 cut(s)	6, 194, 450, 863, 970, 1041, 1192
MmeI	TCCRAC	3 cut(s)	86, 163, 972
MseI	TTAA	3 cut(s)	764, 1044, 1149
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	988
MspR9I	CCNGG	2 cut(s)	299, 420
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	2 cut(s)	565, 621
MvaI	CCWGG	2 cut(s)	299, 420
MwoI	GCNNNNNNNGC	5 cut(s)	11, 54, 371, 972, 1151
NdeII	GATC	4 cut(s)	93, 142, 535, 802
NlaIII	CATG	5 cut(s)	57, 92, 221, 446, 791
NlaIV	GGNNCC	1 cut(s)	1071
NmuCI	GTSAC	2 cut(s)	641, 956
PasI	CCCWGGG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	2 cut(s)	565, 621
PfeI	GAWTC	6 cut(s)	172, 263, 275, 615, 683, 736
PflFI	GACNNNGTC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	815
PinAI	ACCGGT	1 cut(s)	987
PkrI	GCNGC	3 cut(s)	13, 16, 250
PsiI	TTATAA	1 cut(s)	1085
Psp6I	CCWGG	2 cut(s)	297, 418
PspGI	CCWGG	2 cut(s)	297, 418
PspN4I	GGNNCC	1 cut(s)	1071
PspPI	GGNCC	2 cut(s)	185, 340
PsrI	GAACNNNNNNTAC	2 cut(s)	1014, 1046
PsuI	RGATCY	2 cut(s)	93, 535
PsyI	GACNNNGTC	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	3 cut(s)	764, 1044, 1149
SatI	GCNGC	3 cut(s)	12, 15, 249
Sau3AI	GATC	4 cut(s)	93, 142, 535, 802
Sau96I	GGNCC	2 cut(s)	185, 340
ScrFI	CCNGG	2 cut(s)	299, 420
SfaNI	GCATC	5 cut(s)	508, 712, 824, 1054, 1124
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	2 cut(s)	185, 340
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	97, 314
SmoI	CTYRAG	2 cut(s)	97, 314
Sse9I	AATT	7 cut(s)	6, 194, 450, 863, 970, 1041, 1192
SsiI	CCGC	2 cut(s)	251, 1067
SspMI	CTAG	4 cut(s)	282, 626, 671, 704
StyD4I	CCNGG	2 cut(s)	297, 418
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	5 cut(s)	385, 401, 510, 641, 1113
TaqI	TCGA	3 cut(s)	130, 387, 480
TaqII	GACCGA	1 cut(s)	975
TasI	AATT	7 cut(s)	6, 194, 450, 863, 970, 1041, 1192
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	6 cut(s)	172, 263, 275, 615, 683, 736
Tru1I	TTAA	3 cut(s)	764, 1044, 1149
Tru9I	TTAA	3 cut(s)	764, 1044, 1149
TscAI	CASTG	3 cut(s)	206, 406, 646
TseFI	GTSAC	2 cut(s)	641, 956
TseI	GCWGC	3 cut(s)	11, 14, 248
Tsp45I	GTSAC	2 cut(s)	641, 956
TspDTI	ATGAA	6 cut(s)	42, 125, 459, 728, 873, 875
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	3 cut(s)	206, 406, 646
Tth111I	GACNNNGTC	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	815
VpaK11BI	GGWCC	2 cut(s)	185, 340
XapI	RAATTY	2 cut(s)	450, 863
XbaI	TCTAGA	3 cut(s)	625, 670, 703
XspI	CTAG	4 cut(s)	282, 626, 671, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.