Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002666

Physical Location & Seq

Genomic Coordinates Forward (+)

33849701 .. 33858901

Gene Structure 9201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAAACCTCCTTTTGATGGTCGAAGATACCCCGATCCTCTGGGTGTAAGTTTGAAGTGCAGGAATCCGTTAGTTGGACCAACACAATTCCACTGGCTGTCCATTGGACATGGTCTTTGCCTTTCTAAAGTTTCGGTTGCTGCGGATTTCTCAGATTCTGCTCCTGAATCTTCTAGTTATATGACTAACCAGGGTTATCATCCTCTTGAGGAGTTGAAAGCGTGCAAAATGGTCCGAGACACTAAACTCACCTCTGCTGAAATAGCAAGAACAACAGTCGAGGCTAACGACTGTGCTTTGCTGGTTTTCCCTGGGAAGATACACTCTGAACCACATGAACAAATTTCTTGGGCTGAGTTTCAATATGTTATCGACGATTATGGAGATTTATATTTTGAACTGTTTGATGATGCGAACATATTAGAAGACCCTACAGCAAGTAACCCTGTGAATGCTTTGTTTGGAATGGATATCCCTACACACAACAATGGACGAATAGCTGGAGGATTCAGCATTCTAGATGACCAGAACAGTGACGATATTCCTTTTGATGATGATTATCTAGAGGTTGTAGAATCTGAAGCTTTTGATGTTCTGGACTGGGAGATACCTGATGCTTCTACCTTGATTCATCCCATTTATTTTGCAAAGTGCTTAACAAAGGCCACCAATATCAGACATGACAGAAAAATGGATCACCCATCGAATGGTGTTTCTATTTTAGGATGCCTCATACCTGCTTTTGCTGATGAAGAATATTATGTAAGAAGACTATTTCATTATGAGGATAGCGACTATTACAACTCGGATGAGAAAGATGGAAAAGGAGTGAGCATTAGTTCCAAAAGTGACCGAAGCAAGAATTGCTCAACACTCTACCGGTTGGAGATAATGAGAATAGAGTTGTTCTCGGTATATGGTGTTCAGAACGGTTCAACGAAAGAGGTATTAGATGCGATGTTGCTCTTAAAGCTTTATGCAAAAGAAAAGGAATTCAAGTTGAGGGAGCTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

38.2

Weight (kDa)

4.74

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59300 AT3G59300 AT3G59300
fragaria_vesca	FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600
malus_domestica	MD04G1036900.v1.1
prunus_persica	Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1
pyrus_communis	pycom04g03000
rosa_chinensis	RchiOBHm_Chr1g0335941 RchiOBHm_Chr1g0338011 RchiOBHm_Chr1g0338021 RchiOBHm_Chr4g0408711
rosa_laevigata	RLG00000008637
rosa_multiflora	Rmu_sc0005878.1_g000022
rosa_roxburghii	Rroxscaffold_5G00353070
rosa_rugosa	Rorug04G0087000 Rorug04G0087100
rosa_samantha	Rh1DG149600 Rh4AG151100 Rh4BG148500 Rh4CG159200 Rh4DG144100
rosa_wichuraiana	Rw4G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	745
AccB7I	CCANNNNNTGG	1 cut(s)	707
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	2 cut(s)	29, 702
AcsI	RAATTY	2 cut(s)	342, 992
AcuI	CTGAAG	1 cut(s)	600
AfiI	CCNNNNNNNGG	3 cut(s)	17, 74, 707
AgeI	ACCGGT	1 cut(s)	879
AgsI	TTSAA	6 cut(s)	55, 217, 362, 398, 936, 997
AjnI	CCWGG	2 cut(s)	189, 310
AluBI	AGCT	4 cut(s)	500, 584, 973, 1009
AluI	AGCT	4 cut(s)	500, 584, 973, 1009
Alw21I	GWGCWC	1 cut(s)	1011
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	29, 702
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	342, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AsiGI	ACCGGT	1 cut(s)	879
AspS9I	GGNCC	2 cut(s)	77, 232
AsuHPI	GGTGA	2 cut(s)	241, 689
AvaII	GGWCC	2 cut(s)	77, 232
BanII	GRGCYC	1 cut(s)	1011
BbsI	GAAGAC	2 cut(s)	432, 775
Bbv12I	GWGCWC	1 cut(s)	1011
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	3 cut(s)	11, 709, 812
BciT130I	CCWGG	2 cut(s)	191, 312
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	3 cut(s)	174, 518, 563
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	191, 312
Bme18I	GGWCC	2 cut(s)	77, 232
BmgT120I	GGNCC	2 cut(s)	77, 232
BmrFI	CCNGG	2 cut(s)	191, 312
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	4 cut(s)	400, 604, 716, 943
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	2 cut(s)	432, 775
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	190, 310, 311
BsaWI	WCCGGW	1 cut(s)	879
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 74, 707
Bse118I	RCCGGY	1 cut(s)	879
Bse1I	ACTGG	2 cut(s)	98, 605
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	191, 312
BseDI	CCNNGG	3 cut(s)	190, 310, 311
BseGI	GGATG	4 cut(s)	199, 631, 731, 814
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	3 cut(s)	17, 74, 707
BseMII	CTCAG	2 cut(s)	165, 345
BseNI	ACTGG	2 cut(s)	98, 605
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	665
BshTI	ACCGGT	1 cut(s)	879
BsiHKAI	GWGCWC	1 cut(s)	1011
BsiSI	CCGG	1 cut(s)	880
BslI	CCNNNNNNNGG	3 cut(s)	17, 74, 707
BsmAI	GTCTC	1 cut(s)	231
BsmI	GAATGC	2 cut(s)	457, 513
BsnI	GGCC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	1011
Bsp143I	GATC	2 cut(s)	34, 694
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	2 cut(s)	164, 346
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	2 cut(s)	29, 702
BsrFI	RCCGGY	1 cut(s)	879
BsrI	ACTGG	2 cut(s)	98, 605
BssAI	RCCGGY	1 cut(s)	879
BssECI	CCNNGG	3 cut(s)	190, 310, 311
BssMI	GATC	2 cut(s)	34, 694
Bst2UI	CCWGG	2 cut(s)	191, 312
Bst4CI	ACNGT	5 cut(s)	277, 293, 402, 533, 932
BstAPI	GCANNNNNTGC	1 cut(s)	864
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	151, 354
BstF5I	GGATG	4 cut(s)	199, 631, 731, 814
BstKTI	GATC	2 cut(s)	37, 697
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	2 cut(s)	34, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 864, 970
BstNI	CCWGG	2 cut(s)	191, 312
BstSCI	CCNGG	2 cut(s)	189, 310
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	2 cut(s)	432, 775
BsuRI	GGCC	1 cut(s)	665
BtgZI	GCGATG	1 cut(s)	971
BtsCI	GGATG	4 cut(s)	199, 631, 731, 814
BtsIMutI	CAGTG	2 cut(s)	91, 538
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	879
Cfr13I	GGNCC	2 cut(s)	77, 232
CspAI	ACCGGT	1 cut(s)	879
CviAII	CATG	3 cut(s)	110, 335, 680
CviJI	RGCY	8 cut(s)	97, 284, 353, 500, 584, 665, 973, 1009
CviKI_1	RGCY	8 cut(s)	97, 284, 353, 500, 584, 665, 973, 1009
DdeI	CTNAG	2 cut(s)	151, 354
DpnI	GATC	2 cut(s)	36, 696
DpnII	GATC	2 cut(s)	34, 694
Ecl136II	GAGCTC	1 cut(s)	1009
Eco24I	GRGCYC	1 cut(s)	1011
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	77, 232
Eco53kI	GAGCTC	1 cut(s)	1009
Eco57I	CTGAAG	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	1009
EcoRI	GAATTC	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	189, 310
EcoRV	GATATC	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	1011
FaeI	CATG	3 cut(s)	113, 338, 683
FatI	CATG	3 cut(s)	109, 334, 679
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	4 cut(s)	186, 618, 738, 821
FriOI	GRGCYC	1 cut(s)	1011
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	3 cut(s)	174, 518, 563
GluI	GCNGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	1 cut(s)	880
Hin1II	CATG	3 cut(s)	113, 338, 683
HindIII	AAGCTT	2 cut(s)	582, 971
HinfI	GANTC	6 cut(s)	64, 155, 167, 507, 575, 628
HpaII	CCGG	1 cut(s)	880
HphI	GGTGA	2 cut(s)	241, 689
Hpy188I	TCNGA	7 cut(s)	154, 236, 328, 580, 677, 808, 927
Hpy188III	TCNNGA	5 cut(s)	164, 206, 518, 563, 596
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	5 cut(s)	277, 293, 402, 533, 932
HpyCH4V	TGCA	4 cut(s)	60, 225, 647, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 864, 970
HpyF3I	CTNAG	2 cut(s)	151, 354
Hsp92II	CATG	3 cut(s)	113, 338, 683
Kzo9I	GATC	2 cut(s)	34, 694
LmnI	GCTCC	2 cut(s)	166, 1006
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	4 cut(s)	400, 604, 716, 943
MaeI	CTAG	3 cut(s)	174, 518, 563
MaeIII	GTNAC	3 cut(s)	440, 533, 848
MalI	GATC	2 cut(s)	36, 696
MboI	GATC	2 cut(s)	34, 694
MboII	GAAGA	6 cut(s)	36, 162, 328, 437, 764, 780
MhlI	GDGCHC	1 cut(s)	1011
MluCI	AATT	4 cut(s)	86, 342, 862, 992
MmeI	TCCRAC	2 cut(s)	55, 864
MseI	TTAA	2 cut(s)	656, 968
MslI	CAYNNNNRTG	1 cut(s)	486
MspI	CCGG	1 cut(s)	880
MspR9I	CCNGG	2 cut(s)	191, 312
Mva1269I	GAATGC	2 cut(s)	457, 513
MvaI	CCWGG	2 cut(s)	191, 312
MwoI	GCNNNNNNNGC	3 cut(s)	263, 864, 970
NdeII	GATC	2 cut(s)	34, 694
NlaIII	CATG	3 cut(s)	113, 338, 683
NmuCI	GTSAC	2 cut(s)	533, 848
PasI	CCCWGGG	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	2 cut(s)	457, 513
PfeI	GAWTC	6 cut(s)	64, 155, 167, 507, 575, 628
PflFI	GACNNNGTC	1 cut(s)	111
PflMI	CCANNNNNTGG	1 cut(s)	707
PinAI	ACCGGT	1 cut(s)	879
PkrI	GCNGC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	1011
Psp6I	CCWGG	2 cut(s)	189, 310
PspGI	CCWGG	2 cut(s)	189, 310
PspPI	GGNCC	2 cut(s)	77, 232
PsrI	GAACNNNNNNTAC	2 cut(s)	906, 938
PstNI	CAGNNNCTG	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	1011
SaqAI	TTAA	2 cut(s)	656, 968
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	34, 694
Sau96I	GGNCC	2 cut(s)	77, 232
ScrFI	CCNGG	2 cut(s)	191, 312
SduI	GDGCHC	1 cut(s)	1011
SfaNI	GCATC	4 cut(s)	400, 604, 716, 943
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	2 cut(s)	77, 232
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	86, 342, 862, 992
SsiI	CCGC	1 cut(s)	143
SspI	AATATT	1 cut(s)	758
SspMI	CTAG	3 cut(s)	174, 518, 563
SstI	GAGCTC	1 cut(s)	1011
StyD4I	CCNGG	2 cut(s)	189, 310
TaaI	ACNGT	5 cut(s)	277, 293, 402, 533, 932
TaqI	TCGA	4 cut(s)	22, 279, 372, 704
TaqII	GACCGA	1 cut(s)	867
TasI	AATT	4 cut(s)	86, 342, 862, 992
TfiI	GAWTC	6 cut(s)	64, 155, 167, 507, 575, 628
Tru1I	TTAA	2 cut(s)	656, 968
Tru9I	TTAA	2 cut(s)	656, 968
TscAI	CASTG	2 cut(s)	98, 538
TseFI	GTSAC	2 cut(s)	533, 848
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	2 cut(s)	533, 848
TspDTI	ATGAA	5 cut(s)	17, 351, 620, 765, 767
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	98, 538
Tth111I	GACNNNGTC	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	77, 232
XapI	RAATTY	2 cut(s)	342, 992
XbaI	TCTAGA	2 cut(s)	517, 562
XspI	CTAG	3 cut(s)	174, 518, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.