Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002666

Physical Location & Seq

Genomic Coordinates Reverse (-)

31392473 .. 31399148

Gene Structure 6676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG149600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACACACTCCGCCACTCTGCGTCTCTGTGTCATGGCAATTGCAGCTGCTTCTTCTCTTCCCTTGGGTCATTCGCATTGCCACTCATGCCACACAGAAGGAGTTTGTTGTTCGACAAGACATGGGATCTCAAGCAGTTGGATGAAACCTCCTTTTGATGGTCGAAGATACCCTGATCCTCTGGGTGTAAGTTTGAAGTGCAGGAATCCGTTAGTTGGACCAACACAATTCCACTGGCTGTCTATTGGACATGGTCTTTGCCTTTCCAAAGTTTCGGTTGCTGCGGATTTCTCAGATTCTGCTCCTGAATCTTCTAGTTATATGACTAACCAGGGTTATCATCCTCTTGAGGAGTTGAAAGCGTGCAAAATGGTCCGAGACACTAAACTCACCTCTGCTGAAATAGCAAGAACAACAGTCGAGGCTAACGACAGTGCTTTGCTGGTTTTCCCTGGGAAGATACACTCTGAACCACATGAACAAATTTCTTGGGCTGAGTTTCAATATGTTATCGACGATTATGGAGATTTATATTTTGAACTGTTTGATGATGCGAACATATTAGAAGATCCTACAGCAAGTAACCCTGTGGTGAGCATTTTCTTGCTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.41

Weight (kDa)

5.57

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59300 AT3G59300 AT3G59300
fragaria_vesca	FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600 FvH4_4g11600
malus_domestica	MD04G1036900.v1.1
prunus_persica	Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1 Prupe.1G185800_v2.0.a1
pyrus_communis	pycom04g03000
rosa_chinensis	RchiOBHm_Chr1g0335941 RchiOBHm_Chr1g0338011 RchiOBHm_Chr1g0338021 RchiOBHm_Chr4g0408711
rosa_laevigata	RLG00000008637
rosa_multiflora	Rmu_sc0005878.1_g000022
rosa_roxburghii	Rroxscaffold_5G00353070
rosa_rugosa	Rorug04G0087000 Rorug04G0087100
rosa_samantha	Rh1DG149600 Rh4AG151100 Rh4BG148500 Rh4CG159200 Rh4DG144100
rosa_wichuraiana	Rw4G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 284
AclWI	GGATC	3 cut(s)	134, 170, 563
AcsI	RAATTY	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	158, 215
AgsI	TTSAA	4 cut(s)	196, 358, 503, 539
AjnI	CCWGG	2 cut(s)	330, 451
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	2 cut(s)	29, 372
AlwI	GGATC	3 cut(s)	134, 170, 563
AlwNI	CAGNNNCTG	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	44, 47, 281
ApoI	RAATTY	1 cut(s)	483
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
AspS9I	GGNCC	2 cut(s)	218, 373
AsuHPI	GGTGA	2 cut(s)	382, 604
AvaII	GGWCC	2 cut(s)	218, 373
BbvI	GCAGC	3 cut(s)	34, 56, 268
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	332, 453
BcoDI	GTCTC	2 cut(s)	29, 372
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	2 cut(s)	573, 611
BisI	GCNGC	3 cut(s)	45, 48, 282
BlsI	GCNGC	3 cut(s)	46, 49, 283
Bme1390I	CCNGG	2 cut(s)	332, 453
Bme18I	GGWCC	2 cut(s)	218, 373
BmgT120I	GGNCC	2 cut(s)	218, 373
BmrFI	CCNGG	2 cut(s)	332, 453
BmsI	GCATC	1 cut(s)	541
BpuEI	CTTGAG	2 cut(s)	115, 368
BsaJI	CCNNGG	4 cut(s)	63, 331, 451, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 215
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	332, 453
BseDI	CCNNGG	4 cut(s)	63, 331, 451, 452
BseGI	GGATG	2 cut(s)	147, 340
BseLI	CCNNNNNNNGG	2 cut(s)	158, 215
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	306, 486
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	34, 56, 268
BsgI	GTGCAG	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	158, 215
BsmAI	GTCTC	2 cut(s)	29, 372
BsmBI	CGTCTC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	126, 175, 568
BspACI	CCGC	2 cut(s)	12, 284
BspCNI	CTCAG	2 cut(s)	305, 487
BspPI	GGATC	3 cut(s)	134, 170, 563
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	4 cut(s)	63, 331, 451, 452
BssMI	GATC	3 cut(s)	126, 175, 568
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	332, 453
Bst4CI	ACNGT	3 cut(s)	418, 434, 543
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	292, 495
BstF5I	GGATG	2 cut(s)	147, 340
BstKTI	GATC	3 cut(s)	129, 178, 571
BstMAI	GTCTC	2 cut(s)	29, 372
BstMBI	GATC	3 cut(s)	126, 175, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 87, 404
BstNI	CCWGG	2 cut(s)	332, 453
BstSCI	CCNGG	2 cut(s)	330, 451
BstSFI	CTRYAG	2 cut(s)	573, 611
BstV1I	GCAGC	3 cut(s)	34, 56, 268
BstX2I	RGATCY	2 cut(s)	126, 568
BstYI	RGATCY	2 cut(s)	126, 568
BtsCI	GGATG	2 cut(s)	147, 340
BtsIMutI	CAGTG	2 cut(s)	232, 439
Cac8I	GCNNGC	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	218, 373
CseI	GACGC	1 cut(s)	11
CviAII	CATG	5 cut(s)	34, 87, 122, 251, 476
CviJI	RGCY	4 cut(s)	47, 238, 425, 494
CviKI_1	RGCY	4 cut(s)	47, 238, 425, 494
DdeI	CTNAG	2 cut(s)	292, 495
DpnI	GATC	3 cut(s)	128, 177, 570
DpnII	GATC	3 cut(s)	126, 175, 568
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	218, 373
EcoRII	CCWGG	2 cut(s)	330, 451
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	5 cut(s)	37, 90, 125, 254, 479
FatI	CATG	5 cut(s)	33, 86, 121, 250, 475
Fnu4HI	GCNGC	3 cut(s)	45, 48, 282
FokI	GGATG	2 cut(s)	154, 327
Fsp4HI	GCNGC	3 cut(s)	45, 48, 282
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	45, 48, 282
HgaI	GACGC	1 cut(s)	11
Hin1II	CATG	5 cut(s)	37, 90, 125, 254, 479
HinfI	GANTC	3 cut(s)	205, 296, 308
HphI	GGTGA	2 cut(s)	382, 604
Hpy188I	TCNGA	3 cut(s)	295, 377, 469
Hpy188III	TCNNGA	2 cut(s)	305, 347
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	3 cut(s)	418, 434, 543
HpyCH4V	TGCA	3 cut(s)	44, 201, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 87, 404
HpyF3I	CTNAG	2 cut(s)	292, 495
Hsp92II	CATG	5 cut(s)	37, 90, 125, 254, 479
Kzo9I	GATC	3 cut(s)	126, 175, 568
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	3 cut(s)	34, 56, 268
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	3 cut(s)	128, 177, 570
MboI	GATC	3 cut(s)	126, 175, 568
MboII	GAAGA	6 cut(s)	45, 50, 177, 303, 469, 578
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	2 cut(s)	126, 568
MluCI	AATT	3 cut(s)	39, 227, 483
MmeI	TCCRAC	2 cut(s)	119, 196
MnlI	CCTC	6 cut(s)	159, 189, 343, 354, 403, 415
MspA1I	CMGCKG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	332, 453
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	2 cut(s)	332, 453
MwoI	GCNNNNNNNGC	3 cut(s)	44, 87, 404
NdeII	GATC	3 cut(s)	126, 175, 568
NlaIII	CATG	5 cut(s)	37, 90, 125, 254, 479
PasI	CCCWGGG	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	205, 296, 308
PflFI	GACNNNGTC	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	46, 49, 283
Psp6I	CCWGG	2 cut(s)	330, 451
PspGI	CCWGG	2 cut(s)	330, 451
PspPI	GGNCC	2 cut(s)	218, 373
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	126, 568
PsyI	GACNNNGTC	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	47
SatI	GCNGC	3 cut(s)	45, 48, 282
Sau3AI	GATC	3 cut(s)	126, 175, 568
Sau96I	GGNCC	2 cut(s)	218, 373
ScrFI	CCNGG	2 cut(s)	332, 453
SetI	ASST	3 cut(s)	49, 151, 395
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	2 cut(s)	573, 611
SinI	GGWCC	2 cut(s)	218, 373
SmlI	CTYRAG	2 cut(s)	130, 347
SmoI	CTYRAG	2 cut(s)	130, 347
Sse9I	AATT	3 cut(s)	39, 227, 483
SsiI	CCGC	2 cut(s)	12, 284
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	330, 451
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	418, 434, 543
TaqI	TCGA	4 cut(s)	113, 163, 420, 513
TasI	AATT	3 cut(s)	39, 227, 483
TfiI	GAWTC	3 cut(s)	205, 296, 308
TscAI	CASTG	2 cut(s)	239, 439
TseI	GCWGC	3 cut(s)	44, 47, 281
TspDTI	ATGAA	2 cut(s)	158, 492
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	239, 439
Tth111I	GACNNNGTC	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	218, 373
XapI	RAATTY	1 cut(s)	483
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.