MD04G1036900.v1.1

endonuclease activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
4107530 .. 4115881
8352 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1036900.v1.1.491

Sequence Viewer

Length: 1338 bp
ATGGCAATTGCAGCTGCTGCTTCTCTCCCCTTCGAAAGGGTTTGTAGTTCTACAACGCATGGGATCTCAAGCAGTTGGATGAAACCGCCTTTCAATGATCGAAGAGCCCTTGATCTTCCAGGCATAAGGAATCCTCTATTTGGATCAACACAATTCCACTGGCTGTCTAATGGACATGACCTTTGTCATTCCAAAGTTTCCGTTGCTGCAGATTACTCAGATTCTGTTCCCGATTCCTCTAGTTATTTGACTAGCCAAGGTTATCATCCTCTAGAAGAAGTGAAAGTCTGCAAAATGATCCGGGACACTAAACTCACTTCTGCTGAAATAGCAAGAACAACCGTAGAGGCTAACTGCAGTGCTACGGTGGTGTTCCCTGGGAGGATACATTGTGAACCACATGAACAAATTTCCTGGGCTGAGTTTGAATATGTTATCGACGATTGTGGAGATTTATATTTTGAAATTTTTGATGATGCAAACTTATTAGAAGATCGTACAGCAAGTAACCCTGTGAATGTTTTGTTCGGGATGGATATCCTTGCATATGATGACGCAAGAATATCTGGTGATTTCAGCATTCTAGATGGTAGCAGTAGCGATGAAATCCCTTTCGATGATTATTATTCAGAGGTTGTGGACTCTGAAGTTTCTGATGTTCTAGACTGGGGGTTGCCAGATACTTGTAGCTCAATTCATCCTATATGTTTTGCAAAGTACTTGACAAAGGCTATTGATAATGAATACAATAGGAAAATGGATCATCCATCCAATGGTGTCTCTATTTTAGGATGCCTCAGGCCTGCTTTTGCTGATGAAGAATTCTATGTAAGAAGACTGTTTAATTACGTAGATAGCGATGGATACAACTCAGACTGGAAAGATGGAAAAAGTGTGAGCCTTAGTTCTGAAAGTGATCGTAGCTCAACTCTCTACAGGTTGGAGATCATGAGAATAGAGTTGTTCTCTGTATATGGTGTTCAGTCTACAATTAGCTTGCACGATTTTCAAGATGCAGAACCTGATGTTCTTGTAAACTCTACCTCAGAAATTGTAGAACGCTTCAGTGAAAGAGGTATTAGGTGCGATGTTGCTCTTAAAGATTTATGCAAAAGGAAAGGACTTCATGTTGAGGGAGCTCATTTAATCGGGGTTGACAGTCTTGGAATGGATGTTAGAGTCTTCTCAGGGTTGGAAGTGCAAACTCATCGTTTTCCCTTCAAAGTCCGGGCCACATCCGAAGTTGCAGCTGAAAAACAGATTCAGCAACTTTTGTTCCCACGCTCTCGCCGCAAAAAGTTGAGTGCTCATAATGTTAGGGGCGTGGAGTCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

446

Amino Acids

49.91

Weight (kDa)

4.92

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 773
AccI GTMKAC 1 cut(s) 986
AciI CCGC 2 cut(s) 86, 1291
AclWI GGATC 4 cut(s) 71, 151, 292, 768
AcsI RAATTY 3 cut(s) 408, 465, 821
AcuI CTGAAG 2 cut(s) 666, 1048
AfaI GTAC 2 cut(s) 499, 719
AfiI CCNNNNNNNGG 3 cut(s) 36, 140, 773
AgsI TTSAA 5 cut(s) 94, 428, 464, 1010, 1222
AjnI CCWGG 3 cut(s) 118, 376, 413
AluBI AGCT 6 cut(s) 14, 690, 924, 996, 1139, 1250
AluI AGCT 6 cut(s) 14, 690, 924, 996, 1139, 1250
Alw21I GWGCWC 2 cut(s) 1141, 1309
Alw26I GTCTC 1 cut(s) 784
AlwI GGATC 4 cut(s) 71, 151, 292, 768
AlwNI CAGNNNCTG 3 cut(s) 17, 224, 1022
AoxI GGCC 2 cut(s) 800, 1230
ApeKI GCWGC 5 cut(s) 11, 14, 17, 206, 1247
ApoI RAATTY 3 cut(s) 408, 465, 821
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AspS9I GGNCC 1 cut(s) 1230
AsuC2I CCSGG 2 cut(s) 302, 1229
AsuHPI GGTGA 1 cut(s) 581
AsuII TTCGAA 1 cut(s) 33
AxyI CCTNAGG 1 cut(s) 797
BanII GRGCYC 2 cut(s) 109, 1141
BbsI GAAGAC 2 cut(s) 841, 1174
Bbv12I GWGCWC 2 cut(s) 1141, 1309
BbvI GCAGC 4 cut(s) 4, 23, 193, 1259
BccI CCATC 5 cut(s) 526, 581, 775, 854, 878
BcgI CGANNNNNNTGC 2 cut(s) 1190, 1224
BciT130I CCWGG 3 cut(s) 120, 378, 415
BciVI GTATCC 2 cut(s) 378, 857
BcnI CCSGG 2 cut(s) 302, 1229
BcoDI GTCTC 1 cut(s) 784
BfaI CTAG 5 cut(s) 240, 252, 272, 584, 662
BfmI CTRYAG 3 cut(s) 207, 355, 934
BfuI GTATCC 2 cut(s) 378, 857
BisI GCNGC 6 cut(s) 12, 15, 18, 207, 1248, 1291
BlsI GCNGC 6 cut(s) 13, 16, 19, 208, 1249, 1292
BmcAI AGTACT 1 cut(s) 719
Bme1390I CCNGG 5 cut(s) 120, 302, 378, 415, 1229
BmgT120I GGNCC 1 cut(s) 1230
BmrFI CCNGG 5 cut(s) 120, 302, 378, 415, 1229
BmrI ACTGGG 1 cut(s) 676
BmsI GCATC 3 cut(s) 466, 782, 1003
BmuI ACTGGG 1 cut(s) 676
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 841, 1174
BplI GAGNNNNNCTC 2 cut(s) 950, 982
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 52
BpuMI CCSGG 2 cut(s) 302, 1229
BsaAI YACGTR 1 cut(s) 850
BsaBI GATNNNNATC 1 cut(s) 536
BsaJI CCNNGG 4 cut(s) 256, 376, 377, 414
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 140, 773
Bse1I ACTGG 3 cut(s) 164, 671, 881
Bse21I CCTNAGG 1 cut(s) 797
Bse8I GATNNNNATC 1 cut(s) 536
BseBI CCWGG 3 cut(s) 120, 378, 415
BseDI CCNNGG 4 cut(s) 256, 376, 377, 414
BseGI GGATG 9 cut(s) 84, 265, 537, 697, 763, 767, 797, 1177, 1235
BseJI GATNNNNATC 1 cut(s) 536
BseLI CCNNNNNNNGG 3 cut(s) 36, 140, 773
BseMII CTCAG 6 cut(s) 231, 411, 811, 885, 1059, 1200
BseNI ACTGG 3 cut(s) 164, 671, 881
BseXI GCAGC 4 cut(s) 4, 23, 193, 1259
BshFI GGCC 2 cut(s) 802, 1232
BsiHKAI GWGCWC 2 cut(s) 1141, 1309
BsiSI CCGG 2 cut(s) 301, 1228
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 3 cut(s) 36, 140, 773
BsmAI GTCTC 1 cut(s) 784
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 2 cut(s) 802, 1232
Bsp119I TTCGAA 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 109, 1141, 1309
Bsp143I GATC 9 cut(s) 63, 97, 112, 143, 297, 493, 760, 916, 945
BspACI CCGC 2 cut(s) 86, 1291
BspANI GGCC 2 cut(s) 802, 1232
BspCNI CTCAG 6 cut(s) 230, 412, 810, 884, 1058, 1199
BspHI TCATGA 1 cut(s) 948
BspMAI CTGCAG 2 cut(s) 211, 359
BspPI GGATC 4 cut(s) 71, 151, 292, 768
BspQI GCTCTTC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 33
BsrI ACTGG 3 cut(s) 164, 671, 881
BssECI CCNNGG 4 cut(s) 256, 376, 377, 414
BssMI GATC 9 cut(s) 63, 97, 112, 143, 297, 493, 760, 916, 945
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 3 cut(s) 120, 378, 415
Bst4CI ACNGT 4 cut(s) 343, 367, 840, 1160
Bst6I CTCTTC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 850
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 804, 998
BstDEI CTNAG 7 cut(s) 217, 420, 797, 871, 902, 1045, 1186
BstENI CCTNNNNNAGG 1 cut(s) 34
BstF5I GGATG 9 cut(s) 84, 265, 537, 697, 763, 767, 797, 1177, 1235
BstKTI GATC 9 cut(s) 66, 100, 115, 146, 300, 496, 763, 919, 948
BstMAI GTCTC 1 cut(s) 784
BstMBI GATC 9 cut(s) 63, 97, 112, 143, 297, 493, 760, 916, 945
BstMWI GCNNNNNNNGC 4 cut(s) 11, 17, 329, 1290
BstNI CCWGG 3 cut(s) 120, 378, 415
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 5 cut(s) 118, 300, 376, 413, 1227
BstSFI CTRYAG 3 cut(s) 207, 355, 934
BstSNI TACGTA 1 cut(s) 850
BstV1I GCAGC 4 cut(s) 4, 23, 193, 1259
BstV2I GAAGAC 2 cut(s) 841, 1174
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 797
BsuI GTATCC 2 cut(s) 378, 857
BsuRI GGCC 2 cut(s) 802, 1232
BtgZI GCGATG 3 cut(s) 615, 873, 1101
BtsCI GGATG 9 cut(s) 84, 265, 537, 697, 763, 767, 797, 1177, 1235
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 3 cut(s) 157, 364, 1072
Cac8I GCNNGC 2 cut(s) 804, 998
CaiI CAGNNNCTG 3 cut(s) 17, 224, 1022
CciI TCATGA 1 cut(s) 948
Cfr13I GGNCC 1 cut(s) 1230
CseI GACGC 1 cut(s) 563
Csp6I GTAC 2 cut(s) 498, 718
CviAII CATG 5 cut(s) 59, 176, 401, 949, 1127
CviQI GTAC 2 cut(s) 498, 718
DdeI CTNAG 7 cut(s) 217, 420, 797, 871, 902, 1045, 1186
DpnI GATC 9 cut(s) 65, 99, 114, 145, 299, 495, 762, 918, 947
DpnII GATC 9 cut(s) 63, 97, 112, 143, 297, 493, 760, 916, 945
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 1139
Eco105I TACGTA 1 cut(s) 850
Eco130I CCWWGG 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 802
Eco24I GRGCYC 2 cut(s) 109, 1141
Eco32I GATATC 1 cut(s) 538
Eco53kI GAGCTC 1 cut(s) 1139
Eco57I CTGAAG 2 cut(s) 666, 1048
Eco81I CCTNAGG 1 cut(s) 797
EcoICRI GAGCTC 1 cut(s) 1139
EcoNI CCTNNNNNAGG 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 821
EcoRII CCWGG 3 cut(s) 118, 376, 413
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 256
EcoT38I GRGCYC 2 cut(s) 109, 1141
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 5 cut(s) 62, 179, 404, 952, 1130
FaqI GGGAC 1 cut(s) 317
FatI CATG 5 cut(s) 58, 175, 400, 948, 1126
FauNDI CATATG 1 cut(s) 547
FblI GTMKAC 1 cut(s) 986
Fnu4HI GCNGC 6 cut(s) 12, 15, 18, 207, 1248, 1291
FokI GGATG 9 cut(s) 91, 252, 544, 684, 750, 754, 804, 1184, 1222
FriOI GRGCYC 2 cut(s) 109, 1141
Fsp4HI GCNGC 6 cut(s) 12, 15, 18, 207, 1248, 1291
FspBI CTAG 5 cut(s) 240, 252, 272, 584, 662
GluI GCNGC 6 cut(s) 12, 15, 18, 207, 1248, 1291
HaeIII GGCC 2 cut(s) 802, 1232
HapII CCGG 2 cut(s) 301, 1228
HgaI GACGC 1 cut(s) 563
Hin1II CATG 5 cut(s) 62, 179, 404, 952, 1130
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HinfI GANTC 7 cut(s) 130, 221, 233, 641, 1179, 1261, 1328
HpaII CCGG 2 cut(s) 301, 1228
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 5 cut(s) 395, 640, 987, 1036, 1156
Hpy188I TCNGA 8 cut(s) 220, 631, 646, 655, 874, 910, 1048, 1240
Hpy188III TCNNGA 7 cut(s) 230, 272, 529, 584, 662, 949, 1010
Hpy8I GTNNAC 5 cut(s) 395, 640, 987, 1036, 1156
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 40, 1228
HpyCH4III ACNGT 4 cut(s) 343, 367, 840, 1160
HpyCH4IV ACGT 1 cut(s) 849
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 17, 329, 1290
HpyF3I CTNAG 7 cut(s) 217, 420, 797, 871, 902, 1045, 1186
HpySE526I ACGT 1 cut(s) 849
Hsp92II CATG 5 cut(s) 62, 179, 404, 952, 1130
Kzo9I GATC 9 cut(s) 63, 97, 112, 143, 297, 493, 760, 916, 945
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 1136
Lsp1109I GCAGC 4 cut(s) 4, 23, 193, 1259
LweI GCATC 3 cut(s) 466, 782, 1003
MaeI CTAG 5 cut(s) 240, 252, 272, 584, 662
MaeII ACGT 1 cut(s) 849
MaeIII GTNAC 1 cut(s) 506
MalI GATC 9 cut(s) 65, 99, 114, 145, 299, 495, 762, 918, 947
MboI GATC 9 cut(s) 63, 97, 112, 143, 297, 493, 760, 916, 945
MboII GAAGA 7 cut(s) 107, 114, 287, 503, 830, 846, 1174
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 3 cut(s) 109, 1141, 1309
MluCI AATT 9 cut(s) 6, 152, 408, 465, 693, 821, 844, 990, 1050
MlyI GAGTC 3 cut(s) 635, 1188, 1337
MmeI TCCRAC 3 cut(s) 56, 921, 1173
MseI TTAA 3 cut(s) 843, 1098, 1145
MspA1I CMGCKG 2 cut(s) 14, 1250
MspI CCGG 2 cut(s) 301, 1228
MspR9I CCNGG 5 cut(s) 120, 302, 378, 415, 1229
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 3 cut(s) 120, 378, 415
MwoI GCNNNNNNNGC 4 cut(s) 11, 17, 329, 1290
NciI CCSGG 2 cut(s) 302, 1229
NdeI CATATG 1 cut(s) 547
NdeII GATC 9 cut(s) 63, 97, 112, 143, 297, 493, 760, 916, 945
NlaIII CATG 5 cut(s) 62, 179, 404, 952, 1130
NspV TTCGAA 1 cut(s) 33
PagI TCATGA 1 cut(s) 948
PasI CCCWGGG 1 cut(s) 377
PceI AGGCCT 1 cut(s) 802
PciSI GCTCTTC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 855
PctI GAATGC 1 cut(s) 579
PfeI GAWTC 4 cut(s) 130, 221, 233, 1261
PflMI CCANNNNNTGG 1 cut(s) 773
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 6 cut(s) 13, 16, 19, 208, 1249, 1292
PleI GAGTC 3 cut(s) 635, 1187, 1336
PpsI GAGTC 3 cut(s) 635, 1187, 1336
Ppu21I YACGTR 1 cut(s) 850
PshAI GACNNNNGTC 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 1141
Psp6I CCWGG 3 cut(s) 118, 376, 413
PspGI CCWGG 3 cut(s) 118, 376, 413
PspPI GGNCC 1 cut(s) 1230
PsrI GAACNNNNNNTAC 2 cut(s) 963, 995
PstI CTGCAG 2 cut(s) 211, 359
PstNI CAGNNNCTG 3 cut(s) 17, 224, 1022
PsuI RGATCY 1 cut(s) 63
PvuII CAGCTG 2 cut(s) 14, 1250
RsaI GTAC 2 cut(s) 499, 719
RsaNI GTAC 2 cut(s) 498, 718
SacI GAGCTC 1 cut(s) 1141
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 843, 1098, 1145
SatI GCNGC 6 cut(s) 12, 15, 18, 207, 1248, 1291
Sau3AI GATC 9 cut(s) 63, 97, 112, 143, 297, 493, 760, 916, 945
Sau96I GGNCC 1 cut(s) 1230
ScaI AGTACT 1 cut(s) 719
SchI GAGTC 3 cut(s) 635, 1188, 1337
ScrFI CCNGG 5 cut(s) 120, 302, 378, 415, 1229
SduI GDGCHC 3 cut(s) 109, 1141, 1309
SfaNI GCATC 3 cut(s) 466, 782, 1003
SfcI CTRYAG 3 cut(s) 207, 355, 934
SfuI TTCGAA 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SnaBI TACGTA 1 cut(s) 850
Sse9I AATT 9 cut(s) 6, 152, 408, 465, 693, 821, 844, 990, 1050
SseBI AGGCCT 1 cut(s) 802
SsiI CCGC 2 cut(s) 86, 1291
SspMI CTAG 5 cut(s) 240, 252, 272, 584, 662
SstI GAGCTC 1 cut(s) 1141
StuI AGGCCT 1 cut(s) 802
StyD4I CCNGG 5 cut(s) 118, 300, 376, 413, 1227
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 4 cut(s) 343, 367, 840, 1160
TaiI ACGT 1 cut(s) 852
TaqI TCGA 4 cut(s) 33, 100, 438, 615
TasI AATT 9 cut(s) 6, 152, 408, 465, 693, 821, 844, 990, 1050
TatI WGTACW 1 cut(s) 717
TauI GCSGC 1 cut(s) 1293
TfiI GAWTC 4 cut(s) 130, 221, 233, 1261
Tru1I TTAA 3 cut(s) 843, 1098, 1145
Tru9I TTAA 3 cut(s) 843, 1098, 1145
TscAI CASTG 3 cut(s) 164, 364, 1072
TseI GCWGC 5 cut(s) 11, 14, 17, 206, 1247
TspDTI ATGAA 7 cut(s) 95, 417, 618, 686, 756, 831, 1115
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 3 cut(s) 164, 364, 1072
Van91I CCANNNNNTGG 1 cut(s) 773
XagI CCTNNNNNAGG 1 cut(s) 34
XapI RAATTY 3 cut(s) 408, 465, 821
XbaI TCTAGA 3 cut(s) 271, 583, 661
XmiI GTMKAC 1 cut(s) 986
XspI CTAG 5 cut(s) 240, 252, 272, 584, 662
ZrmI AGTACT 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.