Rw0G015160

Protein ROOT PRIMORDIUM DEFECTIVE 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00691
OG0011284
Physical Location & Seq
Forward (+)
26169 .. 27335
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015160.1

Sequence Viewer

Length: 1128 bp
ATGGTTCCGTACATCCTATTTAGTAAGGTTGGGGTTGGCTTCATCCGTGGAACACAAGTATTTAATTTCCAGCACAAGCGTACTCTGGTGAATATTAGATTGAAATGGAGGGATCTCAAAGCTGCCTGTGTTCTTGTTTCCATTATCTCCTCCTCGTCTGATGGCTGCCTCCCCATATACCATCTCTCTTGTCATCGTGGACAGCTCGATCTTCCTTATGACCTCAAGGTCTCTACTTTTATCAGGAGCTACCCATCTGTTTTTCTAGAGTCCCATGTTCTCGATAGCGGTGGCACTCGTGTCCCATGTTTTAGCTTAACTCCTGAAGCCATAAAACTCCGCCAGGAAGAGTCCAATGTCGTTCAGCAGAATAAGATTGATATCCTTAATAGGCTTCGGAAACTGCTCATGCTCACTAGGGGCTGGAAGCTTCCTTTACAAACCATTGACCAGCTGAAATGGGACCTAGGTTTGCCATATGATTACCAGCATTCAGTAATTCCACACCACCCTGATCTATTCTCTTTCATCAGCTTACCTGATGACCGTGTTGGCTTAAAGCTCTTATCCTGGGATGATGATCTTGCTGTCTCCCAGTTGCAAAAGAATTCTGCTATACAACAAGAGGAACAAGATGTGAGAAGTGGCTGTTTAGCTTTTCCAATTGGGTTTACTAGGGGTTTTGGATTGAAGAGAAAATGCATGGAGTGGTTGAAGGAGTGGCAAAGCCTCCCTTATAATTCTCCATACAGTGATGCCTCCCATTTAGATCCTCGTACAGATGAATCGGAGAAGAGGATTGTTGGAGTCTTCCATGAGCTTCTGCATCTCACTATGCAAAAGAAAACTGAACGTAAGAATGTGAGCAACCTTCGTAAACCGTTGGCCCTACCCCAGAAGTTCACTAAAGTGTTTGAGCGTCATCCAGGTATTTTCTACATTTCAAAAAAGTTTGCCACTCAAACTGTCATTCTGAGGGAAGCCTATGATTGTCAACAACTCTTGCAGAAACACCCTATTGCAGAACTGAGAGAAAAATTTGCGATACTGTTGAGGAAAGGTTTGCTGGATAGGAGCAAAGGTCTATACAAGAAAAGTCCAGGCGATGTATTTGAAGTGGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

375

Amino Acids

43.3

Weight (kDa)

9.38

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 27 - 354 2.7e-115 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AasI GACNNNNNNGTC 1 cut(s) 227
AciI CCGC 2 cut(s) 288, 340
AclWI GGATC 3 cut(s) 120, 764, 1115
AcsI RAATTY 2 cut(s) 607, 1037
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 3 cut(s) 11, 82, 778
AgsI TTSAA 5 cut(s) 103, 691, 715, 945, 1115
AjnI CCWGG 4 cut(s) 342, 569, 925, 1099
AleI CACNNNNGTG 1 cut(s) 908
Alw26I GTCTC 2 cut(s) 235, 595
AlwI GGATC 3 cut(s) 120, 764, 1115
AoxI GGCC 1 cut(s) 885
ApeKI GCWGC 2 cut(s) 122, 165
ApoI RAATTY 2 cut(s) 607, 1037
AspA2I CCTAGG 1 cut(s) 466
AspS9I GGNCC 2 cut(s) 463, 886
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 463
AvrII CCTAGG 1 cut(s) 466
BamHI GGATCC 1 cut(s) 1120
BauI CACGAG 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 802
BbvI GCAGC 2 cut(s) 109, 152
BccI CCATC 3 cut(s) 155, 189, 262
BciT130I CCWGG 4 cut(s) 344, 571, 927, 1101
BcoDI GTCTC 2 cut(s) 235, 595
BfaI CTAG 4 cut(s) 266, 417, 467, 675
BisI GCNGC 2 cut(s) 123, 166
BlnI CCTAGG 1 cut(s) 466
BlsI GCNGC 2 cut(s) 124, 167
Bme1390I CCNGG 4 cut(s) 344, 571, 927, 1101
Bme18I GGWCC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 463, 886
BmiI GGNNCC 3 cut(s) 6, 464, 1122
BmrFI CCNGG 4 cut(s) 344, 571, 927, 1101
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 2 cut(s) 745, 835
BmuI ACTGGG 1 cut(s) 589
BpiI GAAGAC 1 cut(s) 802
BpuEI CTTGAG 1 cut(s) 209
BsaBI GATNNNNATC 2 cut(s) 380, 579
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 46, 466, 570
BsaXI ACNNNNNCTCC 2 cut(s) 1066, 1096
Bse1I ACTGG 1 cut(s) 595
Bse8I GATNNNNATC 2 cut(s) 380, 579
BseBI CCWGG 4 cut(s) 344, 571, 927, 1101
BseDI CCNNGG 3 cut(s) 46, 466, 570
BseGI GGATG 4 cut(s) 12, 42, 580, 922
BseJI GATNNNNATC 2 cut(s) 380, 579
BseMII CTCAG 2 cut(s) 965, 1019
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 2 cut(s) 139, 142
BseXI GCAGC 2 cut(s) 109, 152
BshFI GGCC 1 cut(s) 887
BslFI GGGAC 3 cut(s) 256, 287, 476
BsmAI GTCTC 2 cut(s) 235, 595
BsmFI GGGAC 3 cut(s) 256, 287, 476
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 1 cut(s) 887
Bso31I GGTCTC 1 cut(s) 235
Bsp143I GATC 6 cut(s) 112, 208, 514, 580, 769, 1120
BspACI CCGC 2 cut(s) 288, 340
BspANI GGCC 1 cut(s) 887
BspCNI CTCAG 2 cut(s) 966, 1020
BspLI GGNNCC 3 cut(s) 6, 464, 1122
BspPI GGATC 3 cut(s) 120, 764, 1115
BspTNI GGTCTC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 3 cut(s) 46, 466, 570
BssMI GATC 6 cut(s) 112, 208, 514, 580, 769, 1120
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 4 cut(s) 344, 571, 927, 1101
Bst4CI ACNGT 5 cut(s) 548, 752, 882, 967, 1050
Bst6I CTCTTC 3 cut(s) 342, 686, 788
BstDEI CTNAG 2 cut(s) 974, 1028
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 4 cut(s) 12, 42, 580, 922
BstKTI GATC 6 cut(s) 115, 211, 517, 583, 772, 1123
BstMAI GTCTC 2 cut(s) 235, 595
BstMBI GATC 6 cut(s) 112, 208, 514, 580, 769, 1120
BstNI CCWGG 4 cut(s) 344, 571, 927, 1101
BstSCI CCNGG 4 cut(s) 342, 569, 925, 1099
BstV1I GCAGC 2 cut(s) 109, 152
BstV2I GAAGAC 1 cut(s) 802
BstX2I RGATCY 3 cut(s) 112, 769, 1120
BstYI RGATCY 3 cut(s) 112, 769, 1120
BsuRI GGCC 1 cut(s) 887
BtgI CCRYGG 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 1119
BtsCI GGATG 4 cut(s) 12, 42, 580, 922
BtsIMutI CAGTG 1 cut(s) 757
Cfr13I GGNCC 2 cut(s) 463, 886
CseI GACGC 1 cut(s) 908
Csp6I GTAC 3 cut(s) 10, 81, 777
CviAII CATG 5 cut(s) 275, 306, 409, 703, 815
CviQI GTAC 3 cut(s) 10, 81, 777
DdeI CTNAG 2 cut(s) 974, 1028
DpnI GATC 6 cut(s) 114, 210, 516, 582, 771, 1122
DpnII GATC 6 cut(s) 112, 208, 514, 580, 769, 1120
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 3 cut(s) 342, 686, 788
EarI CTCTTC 3 cut(s) 342, 686, 788
EciI GGCGGA 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 466
Eco31I GGTCTC 1 cut(s) 235
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 4 cut(s) 342, 569, 925, 1099
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 466
EcoT22I ATGCAT 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 5 cut(s) 278, 309, 412, 706, 818
FalI AAGNNNNNCTT 2 cut(s) 718, 750
FaqI GGGAC 3 cut(s) 256, 287, 476
FatI CATG 5 cut(s) 274, 305, 408, 702, 814
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 123, 166
FokI GGATG 3 cut(s) 29, 587, 909
Fsp4HI GCNGC 2 cut(s) 123, 166
FspBI CTAG 4 cut(s) 266, 417, 467, 675
GluI GCNGC 2 cut(s) 123, 166
HaeIII GGCC 1 cut(s) 887
HgaI GACGC 1 cut(s) 908
Hin1II CATG 5 cut(s) 278, 309, 412, 706, 818
HincII GTYRAC 1 cut(s) 995
HindII GTYRAC 1 cut(s) 995
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 4 cut(s) 269, 350, 785, 807
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 5 cut(s) 200, 672, 878, 903, 995
Hpy188I TCNGA 4 cut(s) 160, 399, 790, 975
Hpy188III TCNNGA 4 cut(s) 244, 266, 281, 323
Hpy8I GTNNAC 5 cut(s) 200, 672, 878, 903, 995
HpyAV CCTTC 2 cut(s) 709, 881
HpyCH4III ACNGT 5 cut(s) 548, 752, 882, 967, 1050
HpyCH4IV ACGT 1 cut(s) 853
HpyCH4V TGCA 6 cut(s) 601, 702, 826, 838, 1006, 1022
HpyF3I CTNAG 2 cut(s) 974, 1028
HpySE526I ACGT 1 cut(s) 853
Hsp92II CATG 5 cut(s) 278, 309, 412, 706, 818
Kzo9I GATC 6 cut(s) 112, 208, 514, 580, 769, 1120
LmnI GCTCC 2 cut(s) 246, 1074
Lsp1109I GCAGC 2 cut(s) 109, 152
LweI GCATC 2 cut(s) 745, 835
MaeI CTAG 4 cut(s) 266, 417, 467, 675
MaeII ACGT 1 cut(s) 853
MalI GATC 6 cut(s) 114, 210, 516, 582, 771, 1122
MboI GATC 6 cut(s) 112, 208, 514, 580, 769, 1120
MboII GAAGA 5 cut(s) 203, 359, 703, 802, 805
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 3 cut(s) 112, 769, 1120
MluCI AATT 6 cut(s) 64, 498, 607, 663, 739, 1037
MlyI GAGTC 3 cut(s) 278, 359, 816
MmeI TCCRAC 1 cut(s) 784
Mph1103I ATGCAT 1 cut(s) 704
MseI TTAA 4 cut(s) 63, 317, 387, 557
MslI CAYNNNNRTG 1 cut(s) 908
MspA1I CMGCKG 1 cut(s) 454
MspR9I CCNGG 4 cut(s) 344, 571, 927, 1101
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 4 cut(s) 344, 571, 927, 1101
NdeI CATATG 1 cut(s) 478
NdeII GATC 6 cut(s) 112, 208, 514, 580, 769, 1120
NlaIII CATG 5 cut(s) 278, 309, 412, 706, 818
NlaIV GGNNCC 3 cut(s) 6, 464, 1122
NsiI ATGCAT 1 cut(s) 704
OliI CACNNNNGTG 1 cut(s) 908
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 1 cut(s) 785
PkrI GCNGC 2 cut(s) 124, 167
PleI GAGTC 3 cut(s) 277, 358, 815
PpsI GAGTC 3 cut(s) 277, 358, 815
PpuMI RGGWCCY 1 cut(s) 463
PsiI TTATAA 1 cut(s) 738
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 4 cut(s) 342, 569, 925, 1099
PspGI CCWGG 4 cut(s) 342, 569, 925, 1099
PspN4I GGNNCC 3 cut(s) 6, 464, 1122
PspPI GGNCC 2 cut(s) 463, 886
PspPPI RGGWCCY 1 cut(s) 463
PsuI RGATCY 3 cut(s) 112, 769, 1120
PvuII CAGCTG 1 cut(s) 454
RsaI GTAC 3 cut(s) 11, 82, 778
RsaNI GTAC 3 cut(s) 10, 81, 777
RseI CAYNNNNRTG 1 cut(s) 908
SaqAI TTAA 4 cut(s) 63, 317, 387, 557
SatI GCNGC 2 cut(s) 123, 166
Sau3AI GATC 6 cut(s) 112, 208, 514, 580, 769, 1120
Sau96I GGNCC 2 cut(s) 463, 886
SchI GAGTC 3 cut(s) 278, 359, 816
ScrFI CCNGG 4 cut(s) 344, 571, 927, 1101
SfaNI GCATC 2 cut(s) 745, 835
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 908
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 6 cut(s) 64, 498, 607, 663, 739, 1037
SsiI CCGC 2 cut(s) 288, 340
SspI AATATT 1 cut(s) 94
SspMI CTAG 4 cut(s) 266, 417, 467, 675
StyD4I CCNGG 4 cut(s) 342, 569, 925, 1099
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 5 cut(s) 548, 752, 882, 967, 1050
TaiI ACGT 1 cut(s) 856
TaqI TCGA 2 cut(s) 207, 282
TasI AATT 6 cut(s) 64, 498, 607, 663, 739, 1037
TfiI GAWTC 1 cut(s) 785
Tru1I TTAA 4 cut(s) 63, 317, 387, 557
Tru9I TTAA 4 cut(s) 63, 317, 387, 557
TscAI CASTG 1 cut(s) 757
TseI GCWGC 2 cut(s) 122, 165
TspDTI ATGAA 3 cut(s) 31, 517, 798
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 757
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 2 cut(s) 607, 1037
XbaI TCTAGA 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 466
XspI CTAG 4 cut(s) 266, 417, 467, 675
Zsp2I ATGCAT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.