Rh1DG149800

Protein ROOT PRIMORDIUM DEFECTIVE 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011284
Physical Location & Seq
Forward (+)
31416742 .. 31418088
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG149800.1

Sequence Viewer

Length: 1347 bp
ATGGTTCCGTACATCCTATTTAGTAAGGTTGGGGTTGGCTTCATCCGTGGAACACAAGTATTTAATTACCAGCACAAGCGTACTCTGGTGAATATTAGATTGAAATGGGTTAAAGATAGGGCACTGGATGCTGTTGTGACTGCTGAGAGGGATCTCAAAGCTGCCTGTGTTCTTGTTTCCATTATCTCCTCCTCGTCTGATGGCTGCCTCCCCATATACCATCTCTCTTGTCATCGTGGACAACTCGATCTTCCTTATGACCTCAAGGTCTCTACTTTTATCAGGAGGTACCCATCTGTTTTTCTAGAGTCCCATGTTCTCGATAGCGGTGGCACGCGTGTCCCATGTTTTAGCTTAACTCCTGAAACCATAAAACTCCGCCAGGAAGAGTCCAATGTTGTTCAGCAGAATAAGATTGATATCCTTTATAGGCTTCGGAAACTGCTCATGCTCACTAGGGGCTGGAAGCTTCCTTTACAAACCATTGACCAGCTGAAATGGGACCTAGGTTTGCCATATGATTACCAGCATTCAGTAATTCCACATCACCCTGATCTATTCTCTTTCATCAGCTTACCTGATGACCGTGTTGGCTTAAAGCTCTTATCCTGGGATGATGATCTTGCTGTCTCCCAGTTGCAAAAGAATCCTGCTATACAACAAGAGGAAGAAGATGTGAGAAGTGGCTGTTTAGCTTTTCCAATTGGGTTTACTAGGGGTTTTGGATTGAAGAGAAAATGCATGGAGTGGTTGAAGGAGTGGCAAAGCCTCCCTTATAATTCTCCATACTGTGATGCCTCCCATTTAGATCCTCGTGCAGATGAATCGGAGAAGAGGATTGTTGGAGTCTTCCATGAGCTTCTTCATCTCACTATGCAAAAGAAAACTGAACGTAAGAATGTGTGCAACCTTCGTAAACCTTTGGCCCTACCCCAGAAGTTCACTAAAGTGTTTGAGCGTCATCCAGGTATTTTCTACATTTCAAAAAAGTGTGCCACTCAAACTGTCATTCTGAGGGAAGCCTATGATCGTCAACAACTCTTGCAGAAACACCCTATTGCAGAACTGAGAGAAAAATTTGCGATACTGTTGAGGAAAGGTTTGCTGGATAGGAGCAAAGGTCTATACAAGAAAAGTCCAGGCGAGGTATTTGAAGTGGATCCATCAAAAAATATCGTTGTTGATAATATCAGTGATTACCGATCCAGCTTTAAAGAGGATTCGGAGAATGATTTGCTTTATGAGTATGACTCAGATGAACAACATGGACCCTTGCTGAGTCTGAAGTCGAAGTTAGCAGCTGAACAATCTGTCCAGTTTATCTACACCATTGGTGTAACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

448

Amino Acids

51.67

Weight (kDa)

8.84

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 37 - 367 8.9e-118 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AasI GACNNNNNNGTC 1 cut(s) 266
Acc65I GGTACC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 288
AccII CGCG 1 cut(s) 337
AciI CCGC 2 cut(s) 327, 379
AclWI GGATC 5 cut(s) 159, 803, 1154, 1167, 1197
AcsI RAATTY 1 cut(s) 1076
AcuI CTGAAG 1 cut(s) 1304
AfaI GTAC 3 cut(s) 11, 82, 290
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 5 cut(s) 103, 730, 754, 984, 1154
AjnI CCWGG 4 cut(s) 381, 608, 964, 1138
AleI CACNNNNGTG 1 cut(s) 947
AloI GAACNNNNNNTCC 2 cut(s) 1296, 1328
Alw26I GTCTC 2 cut(s) 274, 634
AlwI GGATC 5 cut(s) 159, 803, 1154, 1167, 1197
AoxI GGCC 1 cut(s) 924
ApeKI GCWGC 3 cut(s) 161, 204, 1298
ApoI RAATTY 1 cut(s) 1076
Asp718I GGTACC 1 cut(s) 288
AspA2I CCTAGG 1 cut(s) 505
AspS9I GGNCC 3 cut(s) 502, 925, 1268
AsuHPI GGTGA 2 cut(s) 100, 539
AvaII GGWCC 2 cut(s) 502, 1268
AvrII CCTAGG 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 124
BamHI GGATCC 1 cut(s) 1159
BanI GGYRCC 1 cut(s) 288
BauI CACGAG 1 cut(s) 813
BbsI GAAGAC 1 cut(s) 841
BbvI GCAGC 3 cut(s) 148, 191, 1310
BccI CCATC 4 cut(s) 194, 228, 301, 1171
BcgI CGANNNNNNTGC 2 cut(s) 807, 841
BciT130I CCWGG 4 cut(s) 383, 610, 966, 1140
BcoDI GTCTC 2 cut(s) 274, 634
BfaI CTAG 4 cut(s) 305, 456, 506, 714
BisI GCNGC 3 cut(s) 162, 205, 1299
BlnI CCTAGG 1 cut(s) 505
BlsI GCNGC 3 cut(s) 163, 206, 1300
Bme1390I CCNGG 4 cut(s) 383, 610, 966, 1140
Bme18I GGWCC 2 cut(s) 502, 1268
BmgT120I GGNCC 3 cut(s) 502, 925, 1268
BmiI GGNNCC 5 cut(s) 6, 290, 503, 1161, 1270
BmrFI CCNGG 4 cut(s) 383, 610, 966, 1140
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 2 cut(s) 118, 784
BmuI ACTGGG 1 cut(s) 628
BpiI GAAGAC 1 cut(s) 841
BplI GAGNNNNNCTC 2 cut(s) 1235, 1267
BpuEI CTTGAG 1 cut(s) 248
BsaBI GATNNNNATC 2 cut(s) 419, 618
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 3 cut(s) 46, 505, 609
BsaXI ACNNNNNCTCC 2 cut(s) 1105, 1135
Bse1I ACTGG 3 cut(s) 129, 634, 1315
Bse8I GATNNNNATC 2 cut(s) 419, 618
BseBI CCWGG 4 cut(s) 383, 610, 966, 1140
BseDI CCNNGG 3 cut(s) 46, 505, 609
BseGI GGATG 5 cut(s) 12, 42, 133, 619, 961
BseJI GATNNNNATC 2 cut(s) 419, 618
BseMII CTCAG 5 cut(s) 135, 1004, 1058, 1266, 1268
BseNI ACTGG 3 cut(s) 129, 634, 1315
BseRI GAGGAG 2 cut(s) 178, 181
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 3 cut(s) 148, 191, 1310
BsgI GTGCAG 1 cut(s) 837
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 926
BshNI GGYRCC 1 cut(s) 288
BslFI GGGAC 3 cut(s) 295, 326, 515
BsmAI GTCTC 2 cut(s) 274, 634
BsmFI GGGAC 3 cut(s) 295, 326, 515
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 1 cut(s) 926
Bso31I GGTCTC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 8 cut(s) 151, 247, 553, 619, 808, 1027, 1159, 1202
BspACI CCGC 2 cut(s) 327, 379
BspANI GGCC 1 cut(s) 926
BspCNI CTCAG 5 cut(s) 136, 1005, 1059, 1265, 1269
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 5 cut(s) 6, 290, 503, 1161, 1270
BspPI GGATC 5 cut(s) 159, 803, 1154, 1167, 1197
BspT107I GGYRCC 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 274
BsrI ACTGG 3 cut(s) 129, 634, 1315
BssECI CCNNGG 3 cut(s) 46, 505, 609
BssMI GATC 8 cut(s) 151, 247, 553, 619, 808, 1027, 1159, 1202
BssSI CACGAG 1 cut(s) 813
BssT1I CCWWGG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 813
Bst2UI CCWGG 4 cut(s) 383, 610, 966, 1140
Bst4CI ACNGT 4 cut(s) 587, 791, 1006, 1089
Bst6I CTCTTC 3 cut(s) 381, 725, 827
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 5 cut(s) 144, 1013, 1067, 1252, 1277
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 5 cut(s) 12, 42, 133, 619, 961
BstFNI CGCG 1 cut(s) 337
BstKTI GATC 8 cut(s) 154, 250, 556, 622, 811, 1030, 1162, 1205
BstMAI GTCTC 2 cut(s) 274, 634
BstMBI GATC 8 cut(s) 151, 247, 553, 619, 808, 1027, 1159, 1202
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 4 cut(s) 383, 610, 966, 1140
BstSCI CCNGG 4 cut(s) 381, 608, 964, 1138
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 3 cut(s) 148, 191, 1310
BstV2I GAAGAC 1 cut(s) 841
BstX2I RGATCY 3 cut(s) 151, 808, 1159
BstYI RGATCY 3 cut(s) 151, 808, 1159
BsuRI GGCC 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 5 cut(s) 12, 42, 133, 619, 961
BtsIMutI CAGTG 2 cut(s) 122, 1198
Cac8I GCNNGC 1 cut(s) 335
Cfr13I GGNCC 3 cut(s) 502, 925, 1268
CseI GACGC 1 cut(s) 947
Csp6I GTAC 3 cut(s) 10, 81, 289
CviAII CATG 6 cut(s) 314, 345, 448, 742, 854, 1265
CviQI GTAC 3 cut(s) 10, 81, 289
DdeI CTNAG 5 cut(s) 144, 1013, 1067, 1252, 1277
DpnI GATC 8 cut(s) 153, 249, 555, 621, 810, 1029, 1161, 1204
DpnII GATC 8 cut(s) 151, 247, 553, 619, 808, 1027, 1159, 1202
DraI TTTAAA 1 cut(s) 1213
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 3 cut(s) 381, 725, 827
EarI CTCTTC 3 cut(s) 381, 725, 827
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 502, 1268
Eco57I CTGAAG 1 cut(s) 1304
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 4 cut(s) 381, 608, 964, 1138
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 505
EcoT22I ATGCAT 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 6 cut(s) 317, 348, 451, 745, 857, 1268
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FaqI GGGAC 3 cut(s) 295, 326, 515
FatI CATG 6 cut(s) 313, 344, 447, 741, 853, 1264
FauNDI CATATG 1 cut(s) 517
Fnu4HI GCNGC 3 cut(s) 162, 205, 1299
FokI GGATG 4 cut(s) 29, 140, 626, 948
Fsp4HI GCNGC 3 cut(s) 162, 205, 1299
FspBI CTAG 4 cut(s) 305, 456, 506, 714
GluI GCNGC 3 cut(s) 162, 205, 1299
HaeIII GGCC 1 cut(s) 926
HgaI GACGC 1 cut(s) 947
Hin1II CATG 6 cut(s) 317, 348, 451, 745, 857, 1268
HincII GTYRAC 1 cut(s) 1034
HindII GTYRAC 1 cut(s) 1034
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 8 cut(s) 308, 389, 646, 824, 846, 1220, 1250, 1279
HphI GGTGA 2 cut(s) 100, 539
Hpy166II GTNNAC 5 cut(s) 239, 711, 917, 942, 1034
Hpy188I TCNGA 7 cut(s) 199, 438, 829, 1014, 1225, 1255, 1284
Hpy188III TCNNGA 4 cut(s) 283, 305, 320, 362
Hpy8I GTNNAC 5 cut(s) 239, 711, 917, 942, 1034
HpyAV CCTTC 2 cut(s) 748, 920
HpyCH4III ACNGT 4 cut(s) 587, 791, 1006, 1089
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 7 cut(s) 640, 741, 818, 877, 906, 1045, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 5 cut(s) 144, 1013, 1067, 1252, 1277
HpySE526I ACGT 1 cut(s) 892
Hsp92II CATG 6 cut(s) 317, 348, 451, 745, 857, 1268
KpnI GGTACC 1 cut(s) 292
Kzo9I GATC 8 cut(s) 151, 247, 553, 619, 808, 1027, 1159, 1202
LmnI GCTCC 1 cut(s) 1113
Lsp1109I GCAGC 3 cut(s) 148, 191, 1310
LweI GCATC 2 cut(s) 118, 784
MaeI CTAG 4 cut(s) 305, 456, 506, 714
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 2 cut(s) 136, 1336
MalI GATC 8 cut(s) 153, 249, 555, 621, 810, 1029, 1161, 1204
MboI GATC 8 cut(s) 151, 247, 553, 619, 808, 1027, 1159, 1202
MboII GAAGA 8 cut(s) 242, 398, 680, 683, 742, 841, 844, 854
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 3 cut(s) 151, 808, 1159
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 6 cut(s) 64, 537, 702, 778, 1076, 1342
MluI ACGCGT 1 cut(s) 335
MlyI GAGTC 5 cut(s) 317, 398, 855, 1244, 1288
MmeI TCCRAC 1 cut(s) 823
Mph1103I ATGCAT 1 cut(s) 743
MseI TTAA 5 cut(s) 63, 111, 356, 596, 1212
MslI CAYNNNNRTG 1 cut(s) 947
MspA1I CMGCKG 2 cut(s) 493, 1301
MspR9I CCNGG 4 cut(s) 383, 610, 966, 1140
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 4 cut(s) 383, 610, 966, 1140
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeI CATATG 1 cut(s) 517
NdeII GATC 8 cut(s) 151, 247, 553, 619, 808, 1027, 1159, 1202
NlaIII CATG 6 cut(s) 317, 348, 451, 745, 857, 1268
NlaIV GGNNCC 5 cut(s) 6, 290, 503, 1161, 1270
NmuCI GTSAC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 743
OliI CACNNNNGTG 1 cut(s) 947
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 3 cut(s) 646, 824, 1220
PkrI GCNGC 3 cut(s) 163, 206, 1300
PleI GAGTC 5 cut(s) 316, 397, 854, 1244, 1287
PpsI GAGTC 5 cut(s) 316, 397, 854, 1244, 1287
PpuMI RGGWCCY 1 cut(s) 502
PsiI TTATAA 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 4 cut(s) 381, 608, 964, 1138
PspGI CCWGG 4 cut(s) 381, 608, 964, 1138
PspN4I GGNNCC 5 cut(s) 6, 290, 503, 1161, 1270
PspPI GGNCC 3 cut(s) 502, 925, 1268
PspPPI RGGWCCY 1 cut(s) 502
PsuI RGATCY 3 cut(s) 151, 808, 1159
PvuII CAGCTG 2 cut(s) 493, 1301
RsaI GTAC 3 cut(s) 11, 82, 290
RsaNI GTAC 3 cut(s) 10, 81, 289
RseI CAYNNNNRTG 1 cut(s) 947
SaqAI TTAA 5 cut(s) 63, 111, 356, 596, 1212
SatI GCNGC 3 cut(s) 162, 205, 1299
Sau3AI GATC 8 cut(s) 151, 247, 553, 619, 808, 1027, 1159, 1202
Sau96I GGNCC 3 cut(s) 502, 925, 1268
SchI GAGTC 5 cut(s) 317, 398, 855, 1244, 1288
ScrFI CCNGG 4 cut(s) 383, 610, 966, 1140
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 2 cut(s) 118, 784
SinI GGWCC 2 cut(s) 502, 1268
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 6 cut(s) 64, 537, 702, 778, 1076, 1342
SsiI CCGC 2 cut(s) 327, 379
SspI AATATT 1 cut(s) 94
SspMI CTAG 4 cut(s) 305, 456, 506, 714
StyD4I CCNGG 4 cut(s) 381, 608, 964, 1138
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 4 cut(s) 587, 791, 1006, 1089
TaiI ACGT 1 cut(s) 895
TaqI TCGA 3 cut(s) 246, 321, 1289
TasI AATT 6 cut(s) 64, 537, 702, 778, 1076, 1342
TfiI GAWTC 3 cut(s) 646, 824, 1220
Tru1I TTAA 5 cut(s) 63, 111, 356, 596, 1212
Tru9I TTAA 5 cut(s) 63, 111, 356, 596, 1212
TscAI CASTG 2 cut(s) 129, 1198
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 3 cut(s) 161, 204, 1298
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 31, 556, 837, 854, 1272
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 129, 1198
VpaK11BI GGWCC 2 cut(s) 502, 1268
XapI RAATTY 1 cut(s) 1076
XbaI TCTAGA 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 505
XspI CTAG 4 cut(s) 305, 456, 506, 714
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.