RLG00000008635

Protein ROOT PRIMORDIUM DEFECTIVE 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011284
Physical Location & Seq
Reverse (-)
33840935 .. 33842145
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008635

Sequence Viewer

Length: 1032 bp
ATGGTCCCGTACATGCTATTTGGTAAGGTTGGGGTCGGCTTCATCCGTGGAACACAAGTATTTAATTACCAGCACAAGCGTACTCTGGTGAATATTAGATTGAAATGGGTTAAAGATAGGGCATTGGATGCTGTTGTGACTGCTGAGAGGGATCTCAAAGCTGCCTGTGTTCTTGTTTCCATTATCTCCTCCTCGTTTGATGGCTGCCTCCCCATATACCATCTCACTTGTCATCGTGGACAACTCGATCTTCCTTATGACCTCAAGGTCTCTACTTTTATCAGGAGATACCCATCTGTTTTTCTAGAGTCCCATGTTCTCGATAGCGGTGGCACTCATGTCCCATGTTTTAGCTTAACTCCTGAAGCCATAAAACTCCGCCAAGAAGAGTCCAATGTCGTTCAGCAGAATAAGATTGATATCCTTAATAGGCTTCAGAAACTGCTCATGCTTACTAGGGGCTGGAAGCTTCCTTTACAAACCATTGACCAGCTGAAATGGGACCTAGGTTTGCCACATGATTACCAGCATTCAGTAATTCCACATCACCCTGATCTATTCTCTTTCATCAGCTTACCTGATGACCGTGTTGGCTTAAAGCTCTTATCCTGGGATGATGACCTTGCTGTCTCCCAGTTGCAAAAGAATTCTGCTATACAACAAGAGGAAGAAGATGTGAGAAGTGGCTGTTTAGCTTTTCCAATTGGGTTTACTAGGGGTTTTGGATTGAAGAGAAAATGCATGGAGTGGTTGAAAGAGTGGCAAAGCCTCCCTTATAATTCTCCATACCATGATGCCTCCCATTTAGATCCTCGTACAGATGAATCGGAGAAGAGAATTGTTGGAGTCTTCCATGAGCTTCTTCATCTCACTATGCAAAAGAAAACTGAACGTAAGAATGTGAGCAACCTTCGTAAACCTTTGGCCCTACCCCAGAAGTTCACTAAAGTGTTTGAGCGTCATCCAGAAACACCCTATTGCAGAACTGAGAGAAAAATTTGCGATGCTGTTGAGGAAAGGTTTGCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

344

Amino Acids

39.65

Weight (kDa)

8.8

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 37 - 334 3.4e-98 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AasI GACNNNNNNGTC 2 cut(s) 266, 626
AciI CCGC 2 cut(s) 327, 379
AclWI GGATC 2 cut(s) 159, 803
AcsI RAATTY 2 cut(s) 646, 996
AcuI CTGAAG 2 cut(s) 384, 419
AfaI GTAC 3 cut(s) 11, 82, 817
AgsI TTSAA 3 cut(s) 103, 730, 754
AjnI CCWGG 1 cut(s) 608
AleI CACNNNNGTG 1 cut(s) 947
AluBI AGCT 8 cut(s) 161, 354, 469, 493, 573, 601, 695, 859
AluI AGCT 8 cut(s) 161, 354, 469, 493, 573, 601, 695, 859
Alw26I GTCTC 2 cut(s) 274, 634
AlwI GGATC 2 cut(s) 159, 803
AlwNI CAGNNNCTG 1 cut(s) 442
AoxI GGCC 1 cut(s) 924
ApeKI GCWGC 2 cut(s) 161, 204
ApoI RAATTY 2 cut(s) 646, 996
AspA2I CCTAGG 1 cut(s) 505
AspS9I GGNCC 3 cut(s) 4, 502, 925
AsuHPI GGTGA 2 cut(s) 100, 539
AvaII GGWCC 2 cut(s) 4, 502
AvrII CCTAGG 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 841
BbvI GCAGC 2 cut(s) 148, 191
BccI CCATC 3 cut(s) 194, 228, 301
BciT130I CCWGG 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 274, 634
BfaI CTAG 4 cut(s) 305, 456, 506, 714
BisI GCNGC 2 cut(s) 162, 205
BlnI CCTAGG 1 cut(s) 505
BlsI GCNGC 2 cut(s) 163, 206
Bme1390I CCNGG 1 cut(s) 610
Bme18I GGWCC 2 cut(s) 4, 502
BmgT120I GGNCC 3 cut(s) 4, 502, 925
BmiI GGNNCC 2 cut(s) 6, 503
BmrFI CCNGG 1 cut(s) 610
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 3 cut(s) 118, 784, 994
BmuI ACTGGG 1 cut(s) 628
BpiI GAAGAC 1 cut(s) 841
BpuEI CTTGAG 1 cut(s) 248
BsaBI GATNNNNATC 2 cut(s) 292, 419
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 3 cut(s) 46, 505, 609
Bse1I ACTGG 1 cut(s) 634
Bse8I GATNNNNATC 2 cut(s) 292, 419
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 3 cut(s) 46, 505, 609
BseGI GGATG 4 cut(s) 42, 133, 619, 961
BseJI GATNNNNATC 2 cut(s) 292, 419
BseMII CTCAG 2 cut(s) 135, 978
BseNI ACTGG 1 cut(s) 634
BseRI GAGGAG 2 cut(s) 178, 181
BseXI GCAGC 2 cut(s) 148, 191
BshFI GGCC 1 cut(s) 926
BslFI GGGAC 3 cut(s) 295, 326, 515
BsmAI GTCTC 2 cut(s) 274, 634
BsmFI GGGAC 3 cut(s) 295, 326, 515
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 1 cut(s) 926
Bso31I GGTCTC 1 cut(s) 274
Bsp143I GATC 4 cut(s) 151, 247, 553, 808
BspACI CCGC 2 cut(s) 327, 379
BspANI GGCC 1 cut(s) 926
BspCNI CTCAG 2 cut(s) 136, 979
BspLI GGNNCC 2 cut(s) 6, 503
BspPI GGATC 2 cut(s) 159, 803
BspTNI GGTCTC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 3 cut(s) 46, 505, 609
BssMI GATC 4 cut(s) 151, 247, 553, 808
BssT1I CCWWGG 1 cut(s) 505
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 3 cut(s) 381, 725, 827
BstAPI GCANNNNNTGC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 144, 987
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 4 cut(s) 42, 133, 619, 961
BstKTI GATC 4 cut(s) 154, 250, 556, 811
BstMAI GTCTC 2 cut(s) 274, 634
BstMBI GATC 4 cut(s) 151, 247, 553, 808
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 610
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 608
BstV1I GCAGC 2 cut(s) 148, 191
BstV2I GAAGAC 1 cut(s) 841
BstX2I RGATCY 2 cut(s) 151, 808
BstYI RGATCY 2 cut(s) 151, 808
BsuRI GGCC 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 1017
BtsCI GGATG 4 cut(s) 42, 133, 619, 961
CaiI CAGNNNCTG 1 cut(s) 442
Cfr13I GGNCC 3 cut(s) 4, 502, 925
CseI GACGC 1 cut(s) 947
Csp6I GTAC 3 cut(s) 10, 81, 816
CviAII CATG 9 cut(s) 13, 314, 338, 345, 448, 518, 742, 791, 854
CviQI GTAC 3 cut(s) 10, 81, 816
DdeI CTNAG 2 cut(s) 144, 987
DpnI GATC 4 cut(s) 153, 249, 555, 810
DpnII GATC 4 cut(s) 151, 247, 553, 808
DrdI GACNNNNNNGTC 2 cut(s) 266, 626
DseDI GACNNNNNNGTC 2 cut(s) 266, 626
Eam1104I CTCTTC 3 cut(s) 381, 725, 827
EarI CTCTTC 3 cut(s) 381, 725, 827
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 4, 502
Eco57I CTGAAG 2 cut(s) 384, 419
EcoO109I RGGNCCY 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 608
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 505
EcoT22I ATGCAT 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 9 cut(s) 16, 317, 341, 348, 451, 521, 745, 794, 857
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FaqI GGGAC 3 cut(s) 295, 326, 515
FatI CATG 9 cut(s) 12, 313, 337, 344, 447, 517, 741, 790, 853
Fnu4HI GCNGC 2 cut(s) 162, 205
FokI GGATG 4 cut(s) 29, 140, 626, 948
Fsp4HI GCNGC 2 cut(s) 162, 205
FspBI CTAG 4 cut(s) 305, 456, 506, 714
GluI GCNGC 2 cut(s) 162, 205
HaeIII GGCC 1 cut(s) 926
HgaI GACGC 1 cut(s) 947
Hin1II CATG 9 cut(s) 16, 317, 341, 348, 451, 521, 745, 794, 857
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 4 cut(s) 308, 389, 824, 846
HphI GGTGA 2 cut(s) 100, 539
Hpy166II GTNNAC 4 cut(s) 239, 711, 917, 942
Hpy188I TCNGA 2 cut(s) 438, 829
Hpy188III TCNNGA 5 cut(s) 283, 305, 320, 362, 965
Hpy8I GTNNAC 4 cut(s) 239, 711, 917, 942
HpyAV CCTTC 1 cut(s) 920
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 4 cut(s) 640, 741, 877, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 144, 987
HpySE526I ACGT 1 cut(s) 892
Hsp92II CATG 9 cut(s) 16, 317, 341, 348, 451, 521, 745, 794, 857
Kzo9I GATC 4 cut(s) 151, 247, 553, 808
Lsp1109I GCAGC 2 cut(s) 148, 191
LweI GCATC 3 cut(s) 118, 784, 994
MaeI CTAG 4 cut(s) 305, 456, 506, 714
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 1 cut(s) 136
MalI GATC 4 cut(s) 153, 249, 555, 810
MboI GATC 4 cut(s) 151, 247, 553, 808
MboII GAAGA 8 cut(s) 242, 398, 680, 683, 742, 841, 844, 854
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 2 cut(s) 151, 808
MluCI AATT 7 cut(s) 64, 537, 646, 702, 778, 837, 996
MlyI GAGTC 3 cut(s) 317, 398, 855
MmeI TCCRAC 1 cut(s) 823
Mph1103I ATGCAT 1 cut(s) 743
MseI TTAA 5 cut(s) 63, 111, 356, 426, 596
MslI CAYNNNNRTG 1 cut(s) 947
MspA1I CMGCKG 1 cut(s) 493
MspR9I CCNGG 1 cut(s) 610
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 610
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 4 cut(s) 151, 247, 553, 808
NlaIII CATG 9 cut(s) 16, 317, 341, 348, 451, 521, 745, 794, 857
NlaIV GGNNCC 2 cut(s) 6, 503
NmuCI GTSAC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 743
NspI RCATGY 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 947
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 824
PkrI GCNGC 2 cut(s) 163, 206
PleI GAGTC 3 cut(s) 316, 397, 854
PpsI GAGTC 3 cut(s) 316, 397, 854
PpuMI RGGWCCY 1 cut(s) 502
PsiI TTATAA 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 2 cut(s) 6, 503
PspPI GGNCC 3 cut(s) 4, 502, 925
PspPPI RGGWCCY 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 442
PsuI RGATCY 2 cut(s) 151, 808
PvuII CAGCTG 1 cut(s) 493
RsaI GTAC 3 cut(s) 11, 82, 817
RsaNI GTAC 3 cut(s) 10, 81, 816
RseI CAYNNNNRTG 1 cut(s) 947
SaqAI TTAA 5 cut(s) 63, 111, 356, 426, 596
SatI GCNGC 2 cut(s) 162, 205
Sau3AI GATC 4 cut(s) 151, 247, 553, 808
Sau96I GGNCC 3 cut(s) 4, 502, 925
SchI GAGTC 3 cut(s) 317, 398, 855
ScrFI CCNGG 1 cut(s) 610
SfaNI GCATC 3 cut(s) 118, 784, 994
SinI GGWCC 2 cut(s) 4, 502
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 7 cut(s) 64, 537, 646, 702, 778, 837, 996
SsiI CCGC 2 cut(s) 327, 379
SspI AATATT 1 cut(s) 94
SspMI CTAG 4 cut(s) 305, 456, 506, 714
StyD4I CCNGG 1 cut(s) 608
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 1 cut(s) 587
TaiI ACGT 1 cut(s) 895
TaqI TCGA 2 cut(s) 246, 321
TasI AATT 7 cut(s) 64, 537, 646, 702, 778, 837, 996
TfiI GAWTC 1 cut(s) 824
Tru1I TTAA 5 cut(s) 63, 111, 356, 426, 596
Tru9I TTAA 5 cut(s) 63, 111, 356, 426, 596
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 161, 204
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 4 cut(s) 31, 556, 837, 854
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 2 cut(s) 4, 502
XapI RAATTY 2 cut(s) 646, 996
XbaI TCTAGA 1 cut(s) 304
XceI RCATGY 1 cut(s) 16
XmaJI CCTAGG 1 cut(s) 505
XspI CTAG 4 cut(s) 305, 456, 506, 714
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.