Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001258.1

Orthogroup ID

OG0011284

Physical Location & Seq

Genomic Coordinates Reverse (-)

33883 .. 35301

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001258.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atgcatgattctttggtaagctatagtatagtcaagaatgctgctcatctactgcgtggggagaaagtcttcacttcaggttcgcaagacacagaatgtaatgacaggcaagaatgctgcttatctatttaccaagacagaaccatggttccgtacatcctattttgtaaggttggggttggcttcatccgtggaacacaagtatttaatttccagcacaagcgtactctggtgaatattagattgaaatgggttaaagatagggcactggatgctgttgtgactgctgagagggatctcaaagctgcctgtgttcttgtttccattatctcctcctcgtctgatggctgcctccccatataccatctctcttgtcatcgtggacaactcgatcttccttatgacctcaaggtctctacttttatcaggaggtacccatctgtttttctagagtcccatgtgctcgatagcggtggcactcgtgtcccatgttttagcttagctcctgaagccataaaactccaccaggaagagtccaatgtcgttcagcagaataagattgatatccttaataggcttcggaaactgctcatgttcactaggggctggaagcttcctttacaaaccattgaccagctgaaatgggacctaggtttgccatatgattaccagcattcagtaattccacatcaccctgatctattctctttcatcagcttacctgatgaccgtgttggcttaaagctcttatcctgggatgatgatcttgctgtctcccagttgcaaaagaattctgctatacaacaagaggaacaagatgtgagaagtggctgtttagcttttccaattgggtttactaggggttttggattgaagagaaaatgcatggagtggttgaaggagtggcaaagcctcccttataattctccatactgtgatgcctcccatttagatcctcgtacagatgaatcggagaagaggattgttggagtcttccatgagcttcttcatctcactatgcaaaagaaaactgaacgtaagaatgtgagcaaccttcgtaaacctttggccctaccccagaagttcactaaagtgtttgagcgtcatccaggtattttctacatttcaaaaaagtgtgccactcaaactgtcattctgagggaagcctacgatcgtcaacaactcttgcagaaacaccctactgcagcactgagagaaaaatttgcgatgctgttgaggaaaggtttgctggataggagcaaaggtctatacaagaaaagtccaggcgatgtatttgaagtggatccatcaaaaaatatcgttgataatatcagtgattaccaatccagctttagagaggattcggagaatgatttgttttatgagtatgactcagatgaacaacatgacccttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

472

Amino Acids

54.43

Weight (kDa)

8.3

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48040
fragaria_vesca	FvH4_4g11610 FvH4_4g11610
malus_domestica	MD04G1034200.v1.1
prunus_persica	Prupe.1G185500_v2.0.a1 Prupe.1G185500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408731
rosa_laevigata	RLG00000008635
rosa_multiflora	Rmu_sc0001258.1_g000007 Rmu_sc0006297.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353080
rosa_rugosa	Rorug04G0087100 Rorug04G0087200
rosa_samantha	Rh1DG149800 Rh4AG151400 Rh4BG148600 Rh4CG159500 Rh4DG144600
rosa_wichuraiana	Rw0G015160 Rw4G012410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	921
AasI	GACNNNNNNGTC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	432
AciI	CCGC	1 cut(s)	471
AclWI	GGATC	4 cut(s)	303, 947, 1298, 1311
AcsI	RAATTY	2 cut(s)	790, 1220
AcuI	CTGAAG	2 cut(s)	60, 528
AfaI	GTAC	4 cut(s)	155, 226, 434, 961
AgsI	TTSAA	5 cut(s)	247, 874, 898, 1128, 1298
AjnI	CCWGG	4 cut(s)	525, 752, 1108, 1282
AleI	CACNNNNGTG	1 cut(s)	1091
AloI	GAACNNNNNNTCC	2 cut(s)	133, 165
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	418, 778
AlwI	GGATC	4 cut(s)	303, 947, 1298, 1311
AoxI	GGCC	1 cut(s)	1068
ApeKI	GCWGC	5 cut(s)	41, 117, 305, 348, 1205
ApoI	RAATTY	2 cut(s)	790, 1220
Asp700I	GAANNNNTTC	1 cut(s)	68
Asp718I	GGTACC	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	646, 1069
AsuHPI	GGTGA	2 cut(s)	244, 683
AvaII	GGWCC	1 cut(s)	646
AvrII	CCTAGG	1 cut(s)	649
BaeGI	GKGCMC	1 cut(s)	268
BamHI	GGATCC	1 cut(s)	1303
BanI	GGYRCC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	2 cut(s)	61, 985
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	5 cut(s)	28, 104, 292, 335, 1217
BccI	CCATC	4 cut(s)	338, 372, 445, 1315
BciT130I	CCWGG	4 cut(s)	527, 754, 1110, 1284
BcoDI	GTCTC	2 cut(s)	418, 778
BfaI	CTAG	4 cut(s)	449, 600, 650, 858
BfmI	CTRYAG	2 cut(s)	22, 1203
BisI	GCNGC	5 cut(s)	42, 118, 306, 349, 1206
BlnI	CCTAGG	1 cut(s)	649
BlpI	GCTNAGC	1 cut(s)	499
BlsI	GCNGC	5 cut(s)	43, 119, 307, 350, 1207
Bme1390I	CCNGG	4 cut(s)	527, 754, 1110, 1284
Bme18I	GGWCC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	646, 1069
BmiI	GGNNCC	4 cut(s)	150, 434, 647, 1305
BmrFI	CCNGG	4 cut(s)	527, 754, 1110, 1284
BmrI	ACTGGG	1 cut(s)	772
BmsI	GCATC	3 cut(s)	262, 928, 1218
BmuI	ACTGGG	1 cut(s)	772
BpiI	GAAGAC	2 cut(s)	61, 985
BplI	GAGNNNNNCTC	2 cut(s)	1376, 1408
Bpu1102I	GCTNAGC	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	392
BsaBI	GATNNNNATC	2 cut(s)	563, 762
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	4 cut(s)	144, 190, 649, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	1249, 1279
Bse1I	ACTGG	2 cut(s)	273, 778
Bse8I	GATNNNNATC	2 cut(s)	563, 762
BseBI	CCWGG	4 cut(s)	527, 754, 1110, 1284
BseDI	CCNNGG	4 cut(s)	144, 190, 649, 753
BseGI	GGATG	5 cut(s)	156, 186, 277, 763, 1105
BseJI	GATNNNNATC	2 cut(s)	563, 762
BseMII	CTCAG	4 cut(s)	279, 1148, 1202, 1407
BseNI	ACTGG	2 cut(s)	273, 778
BseRI	GAGGAG	2 cut(s)	322, 325
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	5 cut(s)	28, 104, 292, 335, 1217
Bsh1285I	CGRYCG	1 cut(s)	1174
BshFI	GGCC	1 cut(s)	1070
BshNI	GGYRCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	1174
BsiHKAI	GWGCWC	1 cut(s)	465
BslFI	GGGAC	3 cut(s)	439, 470, 659
BsmAI	GTCTC	2 cut(s)	418, 778
BsmFI	GGGAC	3 cut(s)	439, 470, 659
BsmI	GAATGC	3 cut(s)	43, 119, 673
BsnI	GGCC	1 cut(s)	1070
Bso31I	GGTCTC	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	268, 465
Bsp143I	GATC	7 cut(s)	295, 391, 697, 763, 952, 1171, 1303
Bsp1720I	GCTNAGC	1 cut(s)	499
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	1 cut(s)	1070
BspCNI	CTCAG	4 cut(s)	280, 1149, 1203, 1406
BspLI	GGNNCC	4 cut(s)	150, 434, 647, 1305
BspMAI	CTGCAG	1 cut(s)	1207
BspPI	GGATC	4 cut(s)	303, 947, 1298, 1311
BspT107I	GGYRCC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	273, 778
BssECI	CCNNGG	4 cut(s)	144, 190, 649, 753
BssMI	GATC	7 cut(s)	295, 391, 697, 763, 952, 1171, 1303
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	144, 649
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	4 cut(s)	527, 754, 1110, 1284
Bst4CI	ACNGT	3 cut(s)	731, 935, 1150
Bst6I	CTCTTC	3 cut(s)	525, 869, 971
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstDEI	CTNAG	5 cut(s)	288, 499, 1157, 1211, 1393
BstDSI	CCRYGG	2 cut(s)	144, 190
BstF5I	GGATG	5 cut(s)	156, 186, 277, 763, 1105
BstKTI	GATC	7 cut(s)	298, 394, 700, 766, 955, 1174, 1306
BstMAI	GTCTC	2 cut(s)	418, 778
BstMBI	GATC	7 cut(s)	295, 391, 697, 763, 952, 1171, 1303
BstMCI	CGRYCG	1 cut(s)	1174
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 509
BstNI	CCWGG	4 cut(s)	527, 754, 1110, 1284
BstSCI	CCNGG	4 cut(s)	525, 752, 1108, 1282
BstSFI	CTRYAG	2 cut(s)	22, 1203
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	5 cut(s)	28, 104, 292, 335, 1217
BstV2I	GAAGAC	2 cut(s)	61, 985
BstX2I	RGATCY	3 cut(s)	295, 952, 1303
BstYI	RGATCY	3 cut(s)	295, 952, 1303
BsuRI	GGCC	1 cut(s)	1070
BtgI	CCRYGG	2 cut(s)	144, 190
BtgZI	GCGATG	2 cut(s)	1241, 1302
BtsCI	GGATG	5 cut(s)	156, 186, 277, 763, 1105
BtsIMutI	CAGTG	3 cut(s)	266, 1208, 1339
Cfr13I	GGNCC	2 cut(s)	646, 1069
CseI	GACGC	1 cut(s)	1091
Csp6I	GTAC	4 cut(s)	154, 225, 433, 960
CviAII	CATG	8 cut(s)	5, 145, 458, 489, 592, 886, 998, 1406
CviQI	GTAC	4 cut(s)	154, 225, 433, 960
DdeI	CTNAG	5 cut(s)	288, 499, 1157, 1211, 1393
DpnI	GATC	7 cut(s)	297, 393, 699, 765, 954, 1173, 1305
DpnII	GATC	7 cut(s)	295, 391, 697, 763, 952, 1171, 1303
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eam1104I	CTCTTC	3 cut(s)	525, 869, 971
EarI	CTCTTC	3 cut(s)	525, 869, 971
Eco130I	CCWWGG	2 cut(s)	144, 649
Eco31I	GGTCTC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	60, 528
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	4 cut(s)	525, 752, 1108, 1282
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	144, 649
EcoT22I	ATGCAT	2 cut(s)	6, 887
ErhI	CCWWGG	2 cut(s)	144, 649
FaeI	CATG	8 cut(s)	8, 148, 461, 492, 595, 889, 1001, 1409
FalI	AAGNNNNNCTT	2 cut(s)	901, 933
FaqI	GGGAC	3 cut(s)	439, 470, 659
FatI	CATG	8 cut(s)	4, 144, 457, 488, 591, 885, 997, 1405
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	5 cut(s)	42, 118, 306, 349, 1206
FokI	GGATG	5 cut(s)	143, 173, 284, 770, 1092
Fsp4HI	GCNGC	5 cut(s)	42, 118, 306, 349, 1206
FspBI	CTAG	4 cut(s)	449, 600, 650, 858
GluI	GCNGC	5 cut(s)	42, 118, 306, 349, 1206
HaeIII	GGCC	1 cut(s)	1070
HgaI	GACGC	1 cut(s)	1091
Hin1II	CATG	8 cut(s)	8, 148, 461, 492, 595, 889, 1001, 1409
HincII	GTYRAC	1 cut(s)	1178
HindII	GTYRAC	1 cut(s)	1178
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	7 cut(s)	8, 452, 533, 968, 990, 1361, 1391
HphI	GGTGA	2 cut(s)	244, 683
Hpy166II	GTNNAC	6 cut(s)	383, 597, 855, 1061, 1086, 1178
Hpy188I	TCNGA	6 cut(s)	343, 582, 973, 1158, 1366, 1396
Hpy188III	TCNNGA	4 cut(s)	34, 427, 449, 506
Hpy8I	GTNNAC	6 cut(s)	383, 597, 855, 1061, 1086, 1178
HpyAV	CCTTC	2 cut(s)	892, 1064
HpyCH4III	ACNGT	3 cut(s)	731, 935, 1150
HpyCH4IV	ACGT	1 cut(s)	1036
HpyCH4V	TGCA	6 cut(s)	4, 784, 885, 1021, 1189, 1205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 509
HpyF3I	CTNAG	5 cut(s)	288, 499, 1157, 1211, 1393
HpySE526I	ACGT	1 cut(s)	1036
Hsp92II	CATG	8 cut(s)	8, 148, 461, 492, 595, 889, 1001, 1409
KpnI	GGTACC	1 cut(s)	436
Kzo9I	GATC	7 cut(s)	295, 391, 697, 763, 952, 1171, 1303
LmnI	GCTCC	2 cut(s)	508, 1257
Lsp1109I	GCAGC	5 cut(s)	28, 104, 292, 335, 1217
LweI	GCATC	3 cut(s)	262, 928, 1218
MaeI	CTAG	4 cut(s)	449, 600, 650, 858
MaeII	ACGT	1 cut(s)	1036
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	7 cut(s)	297, 393, 699, 765, 954, 1173, 1305
MboI	GATC	7 cut(s)	295, 391, 697, 763, 952, 1171, 1303
MboII	GAAGA	7 cut(s)	61, 386, 542, 886, 985, 988, 998
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	3 cut(s)	295, 952, 1303
MhlI	GDGCHC	2 cut(s)	268, 465
MluCI	AATT	6 cut(s)	208, 681, 790, 846, 922, 1220
MlyI	GAGTC	4 cut(s)	461, 542, 999, 1385
MmeI	TCCRAC	1 cut(s)	967
Mph1103I	ATGCAT	2 cut(s)	6, 887
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	4 cut(s)	207, 255, 570, 740
MslI	CAYNNNNRTG	1 cut(s)	1091
MspA1I	CMGCKG	1 cut(s)	637
MspR9I	CCNGG	4 cut(s)	527, 754, 1110, 1284
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	3 cut(s)	43, 119, 673
MvaI	CCWGG	4 cut(s)	527, 754, 1110, 1284
MwoI	GCNNNNNNNGC	2 cut(s)	272, 509
NcoI	CCATGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	7 cut(s)	295, 391, 697, 763, 952, 1171, 1303
NlaIII	CATG	8 cut(s)	8, 148, 461, 492, 595, 889, 1001, 1409
NlaIV	GGNNCC	4 cut(s)	150, 434, 647, 1305
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	2 cut(s)	6, 887
OliI	CACNNNNGTG	1 cut(s)	1091
PctI	GAATGC	3 cut(s)	43, 119, 673
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	8, 968, 1361
PkrI	GCNGC	5 cut(s)	43, 119, 307, 350, 1207
Ple19I	CGATCG	1 cut(s)	1174
PleI	GAGTC	4 cut(s)	460, 541, 998, 1385
PpsI	GAGTC	4 cut(s)	460, 541, 998, 1385
PpuMI	RGGWCCY	1 cut(s)	646
PsiI	TTATAA	1 cut(s)	921
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	4 cut(s)	525, 752, 1108, 1282
PspGI	CCWGG	4 cut(s)	525, 752, 1108, 1282
PspN4I	GGNNCC	4 cut(s)	150, 434, 647, 1305
PspPI	GGNCC	2 cut(s)	646, 1069
PspPPI	RGGWCCY	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	1207
PsuI	RGATCY	3 cut(s)	295, 952, 1303
PvuI	CGATCG	1 cut(s)	1174
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	4 cut(s)	155, 226, 434, 961
RsaNI	GTAC	4 cut(s)	154, 225, 433, 960
RseI	CAYNNNNRTG	1 cut(s)	1091
SaqAI	TTAA	4 cut(s)	207, 255, 570, 740
SatI	GCNGC	5 cut(s)	42, 118, 306, 349, 1206
Sau3AI	GATC	7 cut(s)	295, 391, 697, 763, 952, 1171, 1303
Sau96I	GGNCC	2 cut(s)	646, 1069
SchI	GAGTC	4 cut(s)	461, 542, 999, 1385
ScrFI	CCNGG	4 cut(s)	527, 754, 1110, 1284
SduI	GDGCHC	2 cut(s)	268, 465
SfaNI	GCATC	3 cut(s)	262, 928, 1218
SfcI	CTRYAG	2 cut(s)	22, 1203
SinI	GGWCC	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	1091
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	6 cut(s)	208, 681, 790, 846, 922, 1220
SsiI	CCGC	1 cut(s)	471
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	4 cut(s)	449, 600, 650, 858
StyD4I	CCNGG	4 cut(s)	525, 752, 1108, 1282
StyI	CCWWGG	2 cut(s)	144, 649
TaaI	ACNGT	3 cut(s)	731, 935, 1150
TaiI	ACGT	1 cut(s)	1039
TaqI	TCGA	2 cut(s)	390, 465
TasI	AATT	6 cut(s)	208, 681, 790, 846, 922, 1220
TfiI	GAWTC	3 cut(s)	8, 968, 1361
Tru1I	TTAA	4 cut(s)	207, 255, 570, 740
Tru9I	TTAA	4 cut(s)	207, 255, 570, 740
TscAI	CASTG	3 cut(s)	273, 1215, 1339
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	5 cut(s)	41, 117, 305, 348, 1205
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	5 cut(s)	175, 700, 981, 998, 1413
TspGWI	ACGGA	2 cut(s)	141, 179
TspRI	CASTG	3 cut(s)	273, 1215, 1339
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	2 cut(s)	790, 1220
XbaI	TCTAGA	1 cut(s)	448
XmaJI	CCTAGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	4 cut(s)	449, 600, 650, 858
Zsp2I	ATGCAT	2 cut(s)	6, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.