FvH4_4g12450

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
16127130 .. 16129633
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12450.t1

Sequence Viewer

Length: 1473 bp
ATGGCGATGATGCAGCAGTTTGGGCGCACCAAGAGTGTGACGAAGCGTTCGTCGAAATACGTGGAGGAAGCTCTCTACGTTTGGCTCTTCAAAGACGGCGGCTCCGAGGTCAGCGTCCGCCAGAAGCTCAATGAGTTCATCAAGAGCCGCAAGCGCGTCTTCAAATGGGAAGTCGGCGACACTCTCAAGAAGCTTCGCCAGCGCAAACTCTACTACCCTGCTCTCAAGCTCTCGGAGACTATGGCTAAAAGAGGGATGAACAAGACCGTTAGTGATCAGGCTATACATCTCGATCTTGTTGCCAAAGCTCGAGGAATTCCTGCCGCAGAAGATTATTTCAAGAATCTTCCTGAATCGTCGAAAAATCATCTCAGTTACGGGGCGCTGCTTAACTGTTACTGTAAGGAATTGATGACTGAAGAGGCTGAGGCTCTTCTGGAGAAGATGAAGGAACTTAACCTTCCTTTGACCTCTATGCCGTATAATAGCCTTATGACGCTTTACTCAAAAACTGGGAAGCCGGAAAAGATCCCGGCTATTATACAAGAAATGAAGGGTTGCAATGTGATGCTTGATTCATATTCTTATAATGTTTGGATGCGGGCGTTAGCTGCTGTCGATGATGTTTCTGGAGTTGAAAGGGTTATTGATGAGATGAAGAGGGATGGTCGAGTTGCTAGTGATTGGACAACATATAGCAACTTAGCTTCCATCTATGTTGATGCTGGCATGCCTGAGAAGGCAGAAAATGCACTTAGAGAATTGGAGAAGAAAAACACCCACCGTGATCTTTCAGCTTTCCAATTCCTTATTACATTGTATGGTCGAACAGGGAACCTGCTTGAAGTACACAGGGTATGGCGTTCCTTGAGGCTTGCTTTCCCTAAAACTGCAAACATAAGTTATCTGAATATGATCCAGGTCTTGGTTAACTTGAGAGACTTACCAGGTGCAGAGAAATGTTTCAGGGAATGGGAATCTCGATGCTCAACCTATGATATTCGGGTAGCAAATGTTCTCATTGGAGCTTATGCTAAGGAGGGCATGCTAGAGAAGGCTAAGGTGCTTAAGGAACAGGCTCGTAGGAGAGGAGCCAAGCCTAGTGCAAAAACCTGGGAGATCTTTGTGGACTGTTATTTAAAGAATGCAGAATATGACTTGGCAGTTGAGTCTGTTGCCAATGCAATCTCTATTGGTAAAGGGGATGGTGGGAAGTGGGTACCATCACATGAGACCATCAAAACCTTGATGGAGCACTTTGAACAAACTAAGGATGTCGAGGGTGCAGAAGGTTTTCTGGAGATTTTGAAGAAGGCTACAGAGTCATTAGGGGCTGAGGTGTTTGAGTCACTGATTAAAACTTACGCCGCAGCTGGAAAGACAACTCCAGCCATGCGTCATCGATTGAAAATGGAGAATGTGGAGGTTAGTGAAGCCAGCAAAAAGTTGCTCGAGTCCATTTGTGTGGAGTGA

Protein Analysis

491

Amino Acids

55.64

Weight (kDa)

9.02

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 125 - 153 3.2e-06 PPR repeat
PPR_2 PF13041 161 - 204 2.3e-07 PPR repeat family
PPR_2 PF13041 336 - 380 4.7e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013258)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 846
Acc65I GGTACC 1 cut(s) 1219
AccB1I GGYRCC 1 cut(s) 1219
AccB7I CCANNNNNTGG 1 cut(s) 925
AccII CGCG 1 cut(s) 156
AciI CCGC 6 cut(s) 99, 118, 148, 324, 601, 1368
AclWI GGATC 2 cut(s) 523, 910
AcsI RAATTY 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 2 cut(s) 849, 1221
AfiI CCNNNNNNNGG 1 cut(s) 925
AflII CTTAAG 1 cut(s) 1067
AgsI TTSAA 8 cut(s) 91, 163, 340, 638, 845, 1262, 1309, 1408
AjnI CCWGG 3 cut(s) 918, 946, 1112
Alw21I GWGCWC 1 cut(s) 1257
Alw26I GTCTC 3 cut(s) 230, 933, 1226
AlwI GGATC 2 cut(s) 523, 910
Ama87I CYCGRG 2 cut(s) 309, 1451
ApeKI GCWGC 4 cut(s) 13, 385, 611, 1370
ApoI RAATTY 1 cut(s) 315
ArsI GACNNNNNNTTYG 6 cut(s) 31, 35, 63, 67, 156, 188
Asp700I GAANNNNTTC 2 cut(s) 962, 1293
Asp718I GGTACC 1 cut(s) 1219
AspLEI GCGC 4 cut(s) 27, 156, 204, 385
AsuC2I CCSGG 1 cut(s) 533
AvaI CYCGRG 2 cut(s) 309, 1451
BanI GGYRCC 1 cut(s) 1219
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 1257
BbvCI CCTCAGC 2 cut(s) 426, 1335
BbvI GCAGC 4 cut(s) 25, 372, 598, 1382
BccI CCATC 6 cut(s) 659, 719, 1199, 1231, 1243, 1244
BceAI ACGGC 2 cut(s) 112, 463
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 3 cut(s) 920, 948, 1114
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 3 cut(s) 230, 933, 1226
BfaI CTAG 3 cut(s) 678, 1049, 1101
BfmI CTRYAG 1 cut(s) 1317
BfoI RGCGCY 1 cut(s) 386
BfrI CTTAAG 1 cut(s) 1067
BfuAI ACCTGC 1 cut(s) 846
BglII AGATCT 1 cut(s) 1119
BisI GCNGC 8 cut(s) 14, 100, 148, 324, 386, 612, 1368, 1371
BlsI GCNGC 8 cut(s) 15, 101, 149, 325, 387, 613, 1369, 1372
Bme1390I CCNGG 4 cut(s) 533, 920, 948, 1114
BmeT110I CYCGRG 2 cut(s) 309, 1451
BmiI GGNNCC 4 cut(s) 103, 836, 1093, 1221
BmrFI CCNGG 4 cut(s) 533, 920, 948, 1114
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 4 cut(s) 558, 588, 712, 974
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 4 cut(s) 458, 651, 1319, 1371
Bpu10I CCTNAGC 4 cut(s) 426, 1035, 1059, 1335
BpuEI CTTGAG 4 cut(s) 170, 209, 889, 955
BpuMI CCSGG 1 cut(s) 533
Bsa29I ATCGAT 1 cut(s) 1402
BsaAI YACGTR 1 cut(s) 61
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 2 cut(s) 105, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 925
Bse1I ACTGG 1 cut(s) 517
Bse3DI GCAATG 1 cut(s) 568
BseBI CCWGG 3 cut(s) 920, 948, 1114
BseCI ATCGAT 1 cut(s) 1402
BseDI CCNNGG 2 cut(s) 105, 1113
BseGI GGATG 5 cut(s) 261, 603, 670, 1210, 1279
BseLI CCNNNNNNNGG 1 cut(s) 925
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 4 cut(s) 385, 417, 726, 1326
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 1 cut(s) 1104
BseXI GCAGC 4 cut(s) 25, 372, 598, 1382
BsgI GTGCAG 2 cut(s) 972, 1305
Bsh1236I CGCG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 1219
BshVI ATCGAT 1 cut(s) 1402
BsiHKAI GWGCWC 1 cut(s) 1257
BsiHKCI CYCGRG 2 cut(s) 309, 1451
BsiSI CCGG 2 cut(s) 521, 533
BslI CCNNNNNNNGG 1 cut(s) 925
BsmAI GTCTC 3 cut(s) 230, 933, 1226
BsmI GAATGC 1 cut(s) 1150
Bso31I GGTCTC 1 cut(s) 1226
BsoBI CYCGRG 2 cut(s) 309, 1451
Bsp1286I GDGCHC 1 cut(s) 1257
Bsp143I GATC 6 cut(s) 274, 292, 528, 787, 915, 1119
BspACI CCGC 6 cut(s) 99, 118, 148, 324, 601, 1368
BspCNI CTCAG 4 cut(s) 384, 418, 727, 1327
BspDI ATCGAT 1 cut(s) 1402
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 4 cut(s) 103, 836, 1093, 1221
BspMI ACCTGC 1 cut(s) 846
BspPI GGATC 2 cut(s) 523, 910
BspQI GCTCTTC 2 cut(s) 92, 438
BspT107I GGYRCC 1 cut(s) 1219
BspTI CTTAAG 1 cut(s) 1067
BspTNI GGTCTC 1 cut(s) 1226
BsrDI GCAATG 1 cut(s) 568
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 2 cut(s) 105, 1113
BssMI GATC 6 cut(s) 274, 292, 528, 787, 915, 1119
Bst2UI CCWGG 3 cut(s) 920, 948, 1114
Bst4CI ACNGT 5 cut(s) 268, 395, 401, 785, 1133
Bst6I CTCTTC 4 cut(s) 92, 414, 438, 653
BstAFI CTTAAG 1 cut(s) 1067
BstAPI GCANNNNNTGC 1 cut(s) 749
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 8 cut(s) 152, 200, 603, 727, 731, 876, 1046, 1438
BstDEI CTNAG 9 cut(s) 371, 426, 703, 735, 755, 1035, 1059, 1269, 1335
BstF5I GGATG 5 cut(s) 261, 603, 670, 1210, 1279
BstFNI CGCG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 4 cut(s) 27, 156, 204, 385
BstKTI GATC 6 cut(s) 277, 295, 531, 790, 918, 1122
BstMAI GTCTC 3 cut(s) 230, 933, 1226
BstMBI GATC 6 cut(s) 274, 292, 528, 787, 915, 1119
BstMWI GCNNNNNNNGC 5 cut(s) 22, 153, 199, 611, 749
BstNI CCWGG 3 cut(s) 920, 948, 1114
BstNSI RCATGY 2 cut(s) 733, 1048
BstSCI CCNGG 4 cut(s) 531, 918, 946, 1112
BstSFI CTRYAG 1 cut(s) 1317
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 4 cut(s) 25, 372, 598, 1382
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 528, 1119
BstXI CCANNNNNNTGG 1 cut(s) 1465
BstYI RGATCY 2 cut(s) 528, 1119
Bsu15I ATCGAT 1 cut(s) 1402
BsuTUI ATCGAT 1 cut(s) 1402
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 5 cut(s) 261, 603, 670, 1210, 1279
BtsIMutI CAGTG 1 cut(s) 1349
BveI ACCTGC 1 cut(s) 846
Cac8I GCNNGC 8 cut(s) 152, 200, 603, 727, 731, 876, 1046, 1438
CfoI GCGC 4 cut(s) 27, 156, 204, 385
ClaI ATCGAT 1 cut(s) 1402
CseI GACGC 4 cut(s) 103, 145, 505, 1385
CsiI ACCWGGT 1 cut(s) 946
Csp6I GTAC 2 cut(s) 848, 1220
CviAII CATG 4 cut(s) 730, 1045, 1229, 1393
CviQI GTAC 2 cut(s) 848, 1220
DdeI CTNAG 9 cut(s) 371, 426, 703, 735, 755, 1035, 1059, 1269, 1335
DpnI GATC 6 cut(s) 276, 294, 530, 789, 917, 1121
DpnII GATC 6 cut(s) 274, 292, 528, 787, 915, 1119
DraI TTTAAA 1 cut(s) 1140
Eam1104I CTCTTC 4 cut(s) 92, 414, 438, 653
EarI CTCTTC 4 cut(s) 92, 414, 438, 653
EciI GGCGGA 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 1226
Eco57I CTGAAG 1 cut(s) 438
Eco88I CYCGRG 2 cut(s) 309, 1451
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 3 cut(s) 918, 946, 1112
FaeI CATG 4 cut(s) 733, 1048, 1232, 1396
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 4 cut(s) 729, 1044, 1228, 1392
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 8 cut(s) 14, 100, 148, 324, 386, 612, 1368, 1371
FokI GGATG 5 cut(s) 268, 610, 677, 1217, 1286
Fsp4HI GCNGC 8 cut(s) 14, 100, 148, 324, 386, 612, 1368, 1371
FspBI CTAG 3 cut(s) 678, 1049, 1101
GlaI GCGC 4 cut(s) 26, 155, 203, 384
GluI GCNGC 8 cut(s) 14, 100, 148, 324, 386, 612, 1368, 1371
GsuI CTGGAG 4 cut(s) 458, 651, 1319, 1371
HaeII RGCGCY 1 cut(s) 386
HapII CCGG 2 cut(s) 521, 533
HgaI GACGC 4 cut(s) 103, 145, 505, 1385
HhaI GCGC 4 cut(s) 27, 156, 204, 385
Hin1II CATG 4 cut(s) 733, 1048, 1232, 1396
Hin6I GCGC 4 cut(s) 25, 154, 202, 383
HinP1I GCGC 4 cut(s) 25, 154, 202, 383
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 8 cut(s) 343, 353, 575, 977, 1169, 1322, 1346, 1454
HpaI GTTAAC 1 cut(s) 931
HpaII CCGG 2 cut(s) 521, 533
Hpy166II GTNNAC 3 cut(s) 850, 931, 1129
Hpy188I TCNGA 3 cut(s) 106, 235, 909
Hpy188III TCNNGA 9 cut(s) 142, 187, 290, 340, 350, 437, 630, 981, 1298
Hpy8I GTNNAC 3 cut(s) 850, 931, 1129
Hpy99I CGWCG 2 cut(s) 55, 361
HpyAV CCTTC 7 cut(s) 442, 470, 547, 733, 1048, 1283, 1306
HpyCH4III ACNGT 5 cut(s) 268, 395, 401, 785, 1133
HpyCH4IV ACGT 2 cut(s) 60, 78
HpyCH4V TGCA 9 cut(s) 13, 561, 752, 893, 953, 1106, 1148, 1184, 1286
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 153, 199, 611, 749
HpyF3I CTNAG 9 cut(s) 371, 426, 703, 735, 755, 1035, 1059, 1269, 1335
HpySE526I ACGT 2 cut(s) 60, 78
Hsp92II CATG 4 cut(s) 733, 1048, 1232, 1396
HspAI GCGC 4 cut(s) 25, 154, 202, 383
KpnI GGTACC 1 cut(s) 1223
Ksp22I TGATCA 1 cut(s) 274
KspAI GTTAAC 1 cut(s) 931
Kzo9I GATC 6 cut(s) 274, 292, 528, 787, 915, 1119
LguI GCTCTTC 2 cut(s) 92, 438
LmnI GCTCC 4 cut(s) 107, 1025, 1091, 1252
Lsp1109I GCAGC 4 cut(s) 25, 372, 598, 1382
LweI GCATC 4 cut(s) 558, 588, 712, 974
MabI ACCWGGT 1 cut(s) 946
MaeI CTAG 3 cut(s) 678, 1049, 1101
MaeII ACGT 2 cut(s) 60, 78
MaeIII GTNAC 4 cut(s) 37, 374, 395, 1347
MalI GATC 6 cut(s) 276, 294, 530, 789, 917, 1121
MboI GATC 6 cut(s) 274, 292, 528, 787, 915, 1119
MflI RGATCY 2 cut(s) 528, 1119
MhlI GDGCHC 1 cut(s) 1257
MluCI AATT 4 cut(s) 315, 407, 761, 803
MlyI GAGTC 4 cut(s) 1178, 1331, 1355, 1463
MroXI GAANNNNTTC 2 cut(s) 962, 1293
MseI TTAA 6 cut(s) 390, 456, 930, 1068, 1139, 1356
MslI CAYNNNNRTG 1 cut(s) 1463
MspA1I CMGCKG 1 cut(s) 1373
MspCI CTTAAG 1 cut(s) 1067
MspI CCGG 2 cut(s) 521, 533
MspR9I CCNGG 4 cut(s) 533, 920, 948, 1114
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 3 cut(s) 920, 948, 1114
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 5 cut(s) 22, 153, 199, 611, 749
NciI CCSGG 1 cut(s) 533
NdeII GATC 6 cut(s) 274, 292, 528, 787, 915, 1119
NlaIII CATG 4 cut(s) 733, 1048, 1232, 1396
NlaIV GGNNCC 4 cut(s) 103, 836, 1093, 1221
NmuCI GTSAC 2 cut(s) 37, 1347
NspI RCATGY 2 cut(s) 733, 1048
PaeI GCATGC 2 cut(s) 733, 1048
PaeR7I CTCGAG 2 cut(s) 309, 1451
PciSI GCTCTTC 2 cut(s) 92, 438
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 102
PctI GAATGC 1 cut(s) 1150
PdmI GAANNNNTTC 2 cut(s) 962, 1293
PfeI GAWTC 4 cut(s) 343, 353, 575, 977
PflMI CCANNNNNTGG 1 cut(s) 925
PkrI GCNGC 8 cut(s) 15, 101, 149, 325, 387, 613, 1369, 1372
PleI GAGTC 4 cut(s) 1177, 1330, 1354, 1462
PpsI GAGTC 4 cut(s) 1177, 1330, 1354, 1462
Ppu21I YACGTR 1 cut(s) 61
PsiI TTATAA 1 cut(s) 588
Psp6I CCWGG 3 cut(s) 918, 946, 1112
PspGI CCWGG 3 cut(s) 918, 946, 1112
PspN4I GGNNCC 4 cut(s) 103, 836, 1093, 1221
PspXI VCTCGAGB 2 cut(s) 309, 1451
PsrI GAACNNNNNNTAC 2 cut(s) 999, 1031
PsuI RGATCY 2 cut(s) 528, 1119
PvuII CAGCTG 1 cut(s) 1373
RsaI GTAC 2 cut(s) 849, 1221
RsaNI GTAC 2 cut(s) 848, 1220
RseI CAYNNNNRTG 1 cut(s) 1463
SapI GCTCTTC 2 cut(s) 92, 438
SaqAI TTAA 6 cut(s) 390, 456, 930, 1068, 1139, 1356
SatI GCNGC 8 cut(s) 14, 100, 148, 324, 386, 612, 1368, 1371
Sau3AI GATC 6 cut(s) 274, 292, 528, 787, 915, 1119
SchI GAGTC 4 cut(s) 1178, 1331, 1355, 1463
ScrFI CCNGG 4 cut(s) 533, 920, 948, 1114
SduI GDGCHC 1 cut(s) 1257
SexAI ACCWGGT 1 cut(s) 946
SfaNI GCATC 4 cut(s) 558, 588, 712, 974
SfcI CTRYAG 1 cut(s) 1317
Sfr274I CTCGAG 2 cut(s) 309, 1451
SlaI CTCGAG 2 cut(s) 309, 1451
SmiMI CAYNNNNRTG 1 cut(s) 1463
SmlI CTYRAG 7 cut(s) 185, 224, 309, 868, 934, 1067, 1451
SmoI CTYRAG 7 cut(s) 185, 224, 309, 868, 934, 1067, 1451
SphI GCATGC 2 cut(s) 733, 1048
Sse9I AATT 4 cut(s) 315, 407, 761, 803
SsiI CCGC 6 cut(s) 99, 118, 148, 324, 601, 1368
SspMI CTAG 3 cut(s) 678, 1049, 1101
StyD4I CCNGG 4 cut(s) 531, 918, 946, 1112
TaaI ACNGT 5 cut(s) 268, 395, 401, 785, 1133
TaiI ACGT 2 cut(s) 63, 81
TasI AATT 4 cut(s) 315, 407, 761, 803
TatI WGTACW 1 cut(s) 847
TauI GCSGC 4 cut(s) 102, 150, 326, 1370
TfiI GAWTC 4 cut(s) 343, 353, 575, 977
Tru1I TTAA 6 cut(s) 390, 456, 930, 1068, 1139, 1356
Tru9I TTAA 6 cut(s) 390, 456, 930, 1068, 1139, 1356
TscAI CASTG 1 cut(s) 1356
TseFI GTSAC 2 cut(s) 37, 1347
TseI GCWGC 4 cut(s) 13, 385, 611, 1370
Tsp45I GTSAC 2 cut(s) 37, 1347
TspDTI ATGAA 6 cut(s) 127, 272, 461, 566, 567, 671
TspRI CASTG 1 cut(s) 1356
Van91I CCANNNNNTGG 1 cut(s) 925
Vha464I CTTAAG 1 cut(s) 1067
XapI RAATTY 1 cut(s) 315
XceI RCATGY 2 cut(s) 733, 1048
XhoI CTCGAG 2 cut(s) 309, 1451
XmnI GAANNNNTTC 2 cut(s) 962, 1293
XspI CTAG 3 cut(s) 678, 1049, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.