Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013258

Physical Location & Seq

Genomic Coordinates Reverse (-)

5559874 .. 5561634

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTATAAGCAAGTGTATCGTTTTATGCCCAAATTACATGTTGAGCCCAAAAATTCACTCCCCTGTCGATTTTCATTTGCAGCAAAAACCCCTTGGATCACTCTCTTCTCTCTCTCGCAAAACCCTAATTTCAGAGGTCCAATGGCGCTGCAACAGTTCGGGCGGACGAAGAGCGTGACGAAGCGGTCGAGCAAGTACTTGGAGGAGGCTCTGTACCTGAGGCTGTTCAAAGACGGCGGCTCCGAGGTGAGCGTTCGGCAGCAGCTCAATGAAGTCCTCAAGAGCCGCAAGCGAGTTTACAAATGGGAGGTCGGCGACACTCTCAAGAAGCTTCGCGAACGCAAGCTTTACTACCCTGCTCTCAAGATGCTAAGCTGTTTAACATTACAGCTCTCGGAAGCTATGGATAGAAGAGGAATGAACAAGACAGTCAGTGATCAGGCAATACATCTTGATCTTGTTGCTAAAGTCCGAGGCATTCTTGCTGCGGAAAGTTATTTCATTGATCTTCCTGAATCAGCAAAGACCCATCTTTGTTACGGGGCCCTGCTCAACTGTTACTGTAAGGAATTGATGACTGAAAAAGCCGAAGCCCTTATAGAAAAGATGAAGGCTCTTAACCTACCTTTAACCTCCATGCCTTATAACAGCCTTATGACCCTTTACACTAAAACTGGAAAGCCGGATAAGATCCCAGCCATCTTACAAGAAATGAAGGCCTGTAATGTCATGCTCGATTCCTATTCATACAATGTCTGGATGCGGGCACTGGCTGCTGTTAATGATATTTCTGGGGCTGAAAGGGTTATTGATGAGATGAAGAGGGATGGTCGAGTTGCCAGTGATTGGACCACGTATAGCAACATAGCTTCAATTTTTGTTGAAGCTGGCATGTTTGAGAAGGCAGAAAATGCGCTTAAAGAATTGGAGAAGAAAAATTTGCACCGAGATCGATCTGCTTTCCCATTCCTCATTACATTGTATGGTAAAACAGGGAACCTGCGTGAAATTTATCGGGTATGGCGTTCCTTGAGGCTGGCTTTCCCTAAAACTGCAAATATCAGCTATCTGAATATCGATCCAGGTGTTGGTCAACTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

368

Amino Acids

42.14

Weight (kDa)

9.55

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60770
fragaria_vesca	FvH4_4g12450
malus_domestica	MD13G1097100.v1.1 MD16G1098000.v1.1
prunus_persica	Prupe.1G248500_v2.0.a1
pyrus_communis	pycom13g08480 pycom16g08350
rosa_chinensis	RchiOBHm_Chr4g0410731
rosa_laevigata	RLG00000008406
rosa_multiflora	Rmu_sc0001967.1_g000008 Rmu_ssc0000072.1_g000002
rosa_roxburghii	Rroxscaffold_5G00355480
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh4AG162600 Rh4BG161400 Rh4CG175500 Rh4DG158200
rosa_wichuraiana	Rw4G013540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AasI	GACNNNNNNGTC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	1008
AccB7I	CCANNNNNTGG	2 cut(s)	846, 1088
AccII	CGCG	1 cut(s)	336
AciI	CCGC	6 cut(s)	163, 184, 237, 286, 488, 763
AclWI	GGATC	3 cut(s)	104, 685, 1073
AcsI	RAATTY	3 cut(s)	52, 937, 1008
AfaI	GTAC	2 cut(s)	197, 215
AfiI	CCNNNNNNNGG	2 cut(s)	846, 1088
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	4 cut(s)	229, 873, 884, 1100
AjnI	CCWGG	1 cut(s)	1081
AluBI	AGCT	9 cut(s)	265, 331, 346, 375, 391, 401, 869, 887, 1065
AluI	AGCT	9 cut(s)	265, 331, 346, 375, 391, 401, 869, 887, 1065
AlwI	GGATC	3 cut(s)	104, 685, 1073
AoxI	GGCC	2 cut(s)	543, 717
ApaI	GGGCCC	1 cut(s)	547
ApeKI	GCWGC	6 cut(s)	80, 148, 259, 262, 485, 773
ApoI	RAATTY	3 cut(s)	52, 937, 1008
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	2 cut(s)	148, 916
AspS9I	GGNCC	4 cut(s)	137, 543, 544, 849
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	137, 849
AxyI	CCTNAGG	1 cut(s)	218
BaeGI	GKGCMC	2 cut(s)	547, 769
BanII	GRGCYC	2 cut(s)	48, 547
BbvI	GCAGC	6 cut(s)	92, 135, 271, 274, 472, 760
BccI	CCATC	3 cut(s)	537, 707, 821
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	3 cut(s)	33, 932, 966
BciT130I	CCWGG	1 cut(s)	1083
BclI	TGATCA	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	1008
BisI	GCNGC	8 cut(s)	81, 149, 238, 260, 263, 286, 486, 774
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	8 cut(s)	82, 150, 239, 261, 264, 287, 487, 775
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	1083
Bme18I	GGWCC	2 cut(s)	137, 849
BmgT120I	GGNCC	4 cut(s)	137, 543, 544, 849
BmiI	GGNNCC	4 cut(s)	241, 544, 545, 998
BmrFI	CCNGG	1 cut(s)	1083
BmsI	GCATC	2 cut(s)	357, 750
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	4 cut(s)	263, 308, 347, 1051
Bsa29I	ATCGAT	2 cut(s)	952, 1077
BsaAI	YACGTR	1 cut(s)	855
BsaJI	CCNNGG	3 cut(s)	92, 243, 472
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 224, 227, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	846, 1088
Bse1I	ACTGG	3 cut(s)	679, 774, 840
Bse21I	CCTNAGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	1083
BseCI	ATCGAT	2 cut(s)	952, 1077
BseDI	CCNNGG	3 cut(s)	92, 243, 472
BseGI	GGATG	2 cut(s)	765, 832
BseLI	CCNNNNNNNGG	2 cut(s)	846, 1088
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	3 cut(s)	679, 774, 840
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	2 cut(s)	547, 769
BseXI	GCAGC	6 cut(s)	92, 135, 271, 274, 472, 760
BseYI	CCCAGC	1 cut(s)	694
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	545, 719
BshVI	ATCGAT	2 cut(s)	952, 1077
BsiEI	CGRYCG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	683
BslI	CCNNNNNNNGG	2 cut(s)	846, 1088
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	545, 719
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	3 cut(s)	48, 547, 769
Bsp143I	GATC	8 cut(s)	96, 436, 454, 505, 690, 949, 953, 1078
Bsp1720I	GCTNAGC	1 cut(s)	371
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	6 cut(s)	163, 184, 237, 286, 488, 763
BspANI	GGCC	2 cut(s)	545, 719
BspCNI	CTCAG	1 cut(s)	210
BspDI	ATCGAT	2 cut(s)	952, 1077
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	4 cut(s)	241, 544, 545, 998
BspMI	ACCTGC	1 cut(s)	1008
BspPI	GGATC	3 cut(s)	104, 685, 1073
BspQI	GCTCTTC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	679, 774, 840
BssECI	CCNNGG	3 cut(s)	92, 243, 472
BssMI	GATC	8 cut(s)	96, 436, 454, 505, 690, 949, 953, 1078
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	1083
Bst4CI	ACNGT	4 cut(s)	156, 430, 557, 563
Bst6I	CTCTTC	4 cut(s)	110, 164, 406, 815
BstAPI	GCANNNNNTGC	2 cut(s)	773, 911
BstBAI	YACGTR	1 cut(s)	855
BstC8I	GCNNGC	5 cut(s)	290, 344, 765, 889, 1038
BstDEI	CTNAG	2 cut(s)	218, 371
BstF5I	GGATG	2 cut(s)	765, 832
BstFNI	CGCG	1 cut(s)	336
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	148, 916
BstKTI	GATC	8 cut(s)	99, 439, 457, 508, 693, 952, 956, 1081
BstMBI	GATC	8 cut(s)	96, 436, 454, 505, 690, 949, 953, 1078
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	773, 911
BstNI	CCWGG	1 cut(s)	1083
BstNSI	RCATGY	2 cut(s)	41, 895
BstSCI	CCNGG	1 cut(s)	1081
BstSLI	GKGCMC	2 cut(s)	547, 769
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	6 cut(s)	92, 135, 271, 274, 472, 760
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
Bsu15I	ATCGAT	2 cut(s)	952, 1077
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	545, 719
BsuTUI	ATCGAT	2 cut(s)	952, 1077
BtsCI	GGATG	2 cut(s)	765, 832
BtsIMutI	CAGTG	3 cut(s)	439, 767, 847
BtuMI	TCGCGA	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	1008
Cac8I	GCNNGC	5 cut(s)	290, 344, 765, 889, 1038
CfoI	GCGC	2 cut(s)	148, 916
Cfr13I	GGNCC	4 cut(s)	137, 543, 544, 849
ClaI	ATCGAT	2 cut(s)	952, 1077
Csp6I	GTAC	2 cut(s)	196, 214
CviAII	CATG	4 cut(s)	38, 637, 730, 892
CviQI	GTAC	2 cut(s)	196, 214
DdeI	CTNAG	2 cut(s)	218, 371
DpnI	GATC	8 cut(s)	98, 438, 456, 507, 692, 951, 955, 1080
DpnII	GATC	8 cut(s)	96, 436, 454, 505, 690, 949, 953, 1078
DrdI	GACNNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	1 cut(s)	184
Eam1104I	CTCTTC	4 cut(s)	110, 164, 406, 815
EarI	CTCTTC	4 cut(s)	110, 164, 406, 815
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	92
Eco147I	AGGCCT	1 cut(s)	719
Eco24I	GRGCYC	2 cut(s)	48, 547
Eco47I	GGWCC	2 cut(s)	137, 849
Eco81I	CCTNAGG	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	543, 544
EcoRII	CCWGG	1 cut(s)	1081
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	2 cut(s)	48, 547
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	4 cut(s)	41, 640, 733, 895
FatI	CATG	4 cut(s)	37, 636, 729, 891
FauI	CCCGC	1 cut(s)	756
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	8 cut(s)	81, 149, 238, 260, 263, 286, 486, 774
FokI	GGATG	2 cut(s)	772, 839
FriOI	GRGCYC	2 cut(s)	48, 547
Fsp4HI	GCNGC	8 cut(s)	81, 149, 238, 260, 263, 286, 486, 774
GlaI	GCGC	2 cut(s)	147, 915
GluI	GCNGC	8 cut(s)	81, 149, 238, 260, 263, 286, 486, 774
GsaI	CCCAGC	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	545, 719
HapII	CCGG	1 cut(s)	683
HhaI	GCGC	2 cut(s)	148, 916
Hin1II	CATG	4 cut(s)	41, 640, 733, 895
Hin6I	GCGC	2 cut(s)	146, 914
HinP1I	GCGC	2 cut(s)	146, 914
HincII	GTYRAC	1 cut(s)	1094
HindII	GTYRAC	1 cut(s)	1094
HindIII	AAGCTT	2 cut(s)	329, 344
HinfI	GANTC	2 cut(s)	515, 737
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	298, 1094
Hpy188I	TCNGA	5 cut(s)	134, 244, 397, 473, 1071
Hpy188III	TCNNGA	7 cut(s)	280, 325, 335, 364, 452, 512, 757
Hpy8I	GTNNAC	2 cut(s)	298, 1094
HpyAV	CCTTC	3 cut(s)	604, 709, 895
HpyCH4III	ACNGT	4 cut(s)	156, 430, 557, 563
HpyCH4IV	ACGT	1 cut(s)	854
HpyCH4V	TGCA	4 cut(s)	80, 151, 943, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	773, 911
HpyF3I	CTNAG	2 cut(s)	218, 371
HpySE526I	ACGT	1 cut(s)	854
Hsp92II	CATG	4 cut(s)	41, 640, 733, 895
HspAI	GCGC	2 cut(s)	146, 914
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	8 cut(s)	96, 436, 454, 505, 690, 949, 953, 1078
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	6 cut(s)	92, 135, 271, 274, 472, 760
LweI	GCATC	2 cut(s)	357, 750
MaeII	ACGT	1 cut(s)	854
MaeIII	GTNAC	3 cut(s)	175, 536, 557
MalI	GATC	8 cut(s)	98, 438, 456, 507, 692, 951, 955, 1080
MboI	GATC	8 cut(s)	96, 436, 454, 505, 690, 949, 953, 1078
MboII	GAAGA	6 cut(s)	97, 181, 423, 500, 832, 943
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	3 cut(s)	48, 547, 769
MluCI	AATT	8 cut(s)	32, 52, 127, 569, 873, 923, 937, 1008
MseI	TTAA	5 cut(s)	380, 618, 629, 780, 918
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	1083
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	1083
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	773, 911
NdeII	GATC	8 cut(s)	96, 436, 454, 505, 690, 949, 953, 1078
NlaIII	CATG	4 cut(s)	41, 640, 733, 895
NlaIV	GGNNCC	4 cut(s)	241, 544, 545, 998
NmuCI	GTSAC	1 cut(s)	175
NruI	TCGCGA	1 cut(s)	336
NspI	RCATGY	2 cut(s)	41, 895
PceI	AGGCCT	1 cut(s)	719
PciI	ACATGT	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	3 cut(s)	185, 240, 1021
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	515, 737
PflMI	CCANNNNNTGG	2 cut(s)	846, 1088
PkrI	GCNGC	8 cut(s)	82, 150, 239, 261, 264, 287, 487, 775
Ppu21I	YACGTR	1 cut(s)	855
PscI	ACATGT	1 cut(s)	37
PsiI	TTATAA	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	1081
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	1081
PspN4I	GGNNCC	4 cut(s)	241, 544, 545, 998
PspOMI	GGGCCC	1 cut(s)	543
PspPI	GGNCC	4 cut(s)	137, 543, 544, 849
PsuI	RGATCY	1 cut(s)	690
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	2 cut(s)	197, 215
RsaNI	GTAC	2 cut(s)	196, 214
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	5 cut(s)	380, 618, 629, 780, 918
SatI	GCNGC	8 cut(s)	81, 149, 238, 260, 263, 286, 486, 774
Sau3AI	GATC	8 cut(s)	96, 436, 454, 505, 690, 949, 953, 1078
Sau96I	GGNCC	4 cut(s)	137, 543, 544, 849
ScaI	AGTACT	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	1083
SduI	GDGCHC	3 cut(s)	48, 547, 769
SfaNI	GCATC	2 cut(s)	357, 750
SinI	GGWCC	2 cut(s)	137, 849
SmlI	CTYRAG	4 cut(s)	278, 323, 362, 1030
SmoI	CTYRAG	4 cut(s)	278, 323, 362, 1030
Sse9I	AATT	8 cut(s)	32, 52, 127, 569, 873, 923, 937, 1008
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	6 cut(s)	163, 184, 237, 286, 488, 763
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	1 cut(s)	1081
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	4 cut(s)	156, 430, 557, 563
TaiI	ACGT	1 cut(s)	857
TaqI	TCGA	6 cut(s)	67, 188, 735, 832, 952, 1077
TasI	AATT	8 cut(s)	32, 52, 127, 569, 873, 923, 937, 1008
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	2 cut(s)	240, 288
TfiI	GAWTC	2 cut(s)	515, 737
Tru1I	TTAA	5 cut(s)	380, 618, 629, 780, 918
Tru9I	TTAA	5 cut(s)	380, 618, 629, 780, 918
TscAI	CASTG	3 cut(s)	439, 774, 847
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	6 cut(s)	80, 148, 259, 262, 485, 773
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	8 cut(s)	63, 285, 434, 490, 623, 728, 735, 833
TspRI	CASTG	3 cut(s)	439, 774, 847
Van91I	CCANNNNNTGG	2 cut(s)	846, 1088
VpaK11BI	GGWCC	2 cut(s)	137, 849
XapI	RAATTY	3 cut(s)	52, 937, 1008
XceI	RCATGY	2 cut(s)	41, 895
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.