Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013258

Physical Location & Seq

Genomic Coordinates Reverse (-)

5654672 .. 5656320

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGCTGCAACAGTTCGGGCGCACGAAGAGCGTGACGAAGCGGTCGAGCAAGTACTTGGAGGAGGCTCTGTACCTGAGGCTGTTCAAGGACGGCGGCTCGGATGTGAGCGTTCGACAGCAGCTCAATGAAGTCCTCAAGAGCCGCAAGCGAGTTTACAAATGGGAGGTCGGCGACACTCTCAAGAAGCTTCGCGAACGCAAGCTATACTACCCTGCCCTCAAGATGCTGAGCTGTTTTACATTACAGCTATCGGAAGCTATGGATAGAAGAGGAATGAACAAGACAGTCAGTGATCAGGCAATACATCTTGATCTTGTTGCTAAAGCCCGAGGTATTCCTGCTGCGGAAAATTATTTTATCGATCTTCCTGAATCAGCAAAGACCCATCTCTGTTATGGTGCCCTGCTCAATTGTTACTGTAAGGAATTGATGACTGAAAAAGCTGAAGCCCTCATAGAAAAGATGAAGGCTCTTAACCTTCCTTTAACCTCCATGCCTTATAACAGCCTTATGACCCTTTACTCAAAAACTGGAAAGCCGGATAAGATCCCAGCCATCGTACAAGAAATGAAGGCCTGTAATGTCATGCTTGATTCCTATTCATACAATGTTTGGATGGGGGCACTTGCTTCTGTTAATGATATTTCTGGGGCTGAAAGGGTTATTGATGAGATGAAGAGGGATGGTCGAGTTGCCAGTGATTGGACCACGTATAGCAACTTAGCTTCAATTTTTGTTGAAGCCGGCATGTTTGAGAAGGCAGAAAATGCGCTTAAAGAATTGGAGAAGAAAAATTCGCGCCGAGATCTTTTGGCTTTCCAATTCCTCATTACATTGTATGGTAAAACAGGGAACCTGCGTGAAGTTTATCGTGTATGGCGTTCCTTGAGGCTGGCTTTCCCTAAGACTGCAAATATCAGTTATCTGAATATGATCCAGGTGTTGGTCAACTTGAACGACATACCGGGTGCAGAGAAAACTTTCAGGGAATGGGAATGTCAGTGCTCAACATATGATATTCGGGTAGCAAATGTGTTGATTGGAGCTTATGCTGAACAGGGTATGCTAGAGAAGGCGAAGGAGCTCAAGGAGCTGGCCCGCCGGAGAGGAGCCAAGCCTAATGCAAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

379

Amino Acids

43.13

Weight (kDa)

9.37

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	168 - 211	3.9e-07	PPR repeat family
TPR_24	PF23276	176 - 296	1.2e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60770
fragaria_vesca	FvH4_4g12450
malus_domestica	MD13G1097100.v1.1 MD16G1098000.v1.1
prunus_persica	Prupe.1G248500_v2.0.a1
pyrus_communis	pycom13g08480 pycom16g08350
rosa_chinensis	RchiOBHm_Chr4g0410731
rosa_laevigata	RLG00000008406
rosa_multiflora	Rmu_sc0001967.1_g000008 Rmu_ssc0000072.1_g000002
rosa_roxburghii	Rroxscaffold_5G00355480
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh4AG162600 Rh4BG161400 Rh4CG175500 Rh4DG158200
rosa_wichuraiana	Rw4G013540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AasI	GACNNNNNNGTC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	2 cut(s)	705, 946
AccII	CGCG	2 cut(s)	195, 802
AciI	CCGC	5 cut(s)	43, 96, 145, 347, 1102
AclWI	GGATC	2 cut(s)	544, 931
AcsI	RAATTY	1 cut(s)	796
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	3 cut(s)	56, 74, 564
AfiI	CCNNNNNNNGG	2 cut(s)	705, 946
AgsI	TTSAA	4 cut(s)	88, 732, 743, 958
AjnI	CCWGG	1 cut(s)	939
Alw21I	GWGCWC	2 cut(s)	1010, 1089
AlwI	GGATC	2 cut(s)	544, 931
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	2 cut(s)	576, 1098
ApeKI	GCWGC	3 cut(s)	7, 121, 344
ApoI	RAATTY	1 cut(s)	796
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
Asp700I	GAANNNNTTC	1 cut(s)	983
AspLEI	GCGC	4 cut(s)	7, 24, 775, 804
AspS9I	GGNCC	2 cut(s)	708, 1099
AsuC2I	CCSGG	1 cut(s)	969
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	708
AxyI	CCTNAGG	1 cut(s)	77
BaeGI	GKGCMC	2 cut(s)	406, 628
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	1089
Bbv12I	GWGCWC	2 cut(s)	1010, 1089
BbvI	GCAGC	2 cut(s)	133, 331
BccI	CCATC	4 cut(s)	396, 566, 613, 680
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	941
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	969
BfaI	CTAG	1 cut(s)	1070
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	867
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	5 cut(s)	8, 97, 122, 145, 345
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	5 cut(s)	9, 98, 123, 146, 346
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	941, 969
Bme18I	GGWCC	1 cut(s)	708
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	708, 1099
BmiI	GGNNCC	3 cut(s)	403, 857, 1114
BmrFI	CCNGG	2 cut(s)	941, 969
BmsI	GCATC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	5 cut(s)	122, 167, 206, 910, 1073
BpuMI	CCSGG	1 cut(s)	969
Bsa29I	ATCGAT	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	705, 946
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	2 cut(s)	538, 699
Bse21I	CCTNAGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	941
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	3 cut(s)	109, 624, 691
BseLI	CCNNNNNNNGG	2 cut(s)	705, 946
BseMII	CTCAG	2 cut(s)	68, 221
BseNI	ACTGG	2 cut(s)	538, 699
BseRI	GAGGAG	2 cut(s)	77, 1125
BseSI	GKGCMC	2 cut(s)	406, 628
BseXI	GCAGC	2 cut(s)	133, 331
BseYI	CCCAGC	1 cut(s)	553
BsgI	GTGCAG	1 cut(s)	993
Bsh1236I	CGCG	2 cut(s)	195, 802
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	578, 1100
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	1010, 1089
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	4 cut(s)	542, 747, 968, 1105
BslI	CCNNNNNNNGG	2 cut(s)	705, 946
BsnI	GGCC	2 cut(s)	578, 1100
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	4 cut(s)	406, 628, 1010, 1089
Bsp143I	GATC	6 cut(s)	295, 313, 364, 549, 808, 936
Bsp1720I	GCTNAGC	1 cut(s)	230
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	5 cut(s)	43, 96, 145, 347, 1102
BspANI	GGCC	2 cut(s)	578, 1100
BspCNI	CTCAG	2 cut(s)	69, 222
BspDI	ATCGAT	1 cut(s)	363
BspFNI	CGCG	2 cut(s)	195, 802
BspLI	GGNNCC	3 cut(s)	403, 857, 1114
BspMI	ACCTGC	1 cut(s)	867
BspPI	GGATC	2 cut(s)	544, 931
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	2 cut(s)	538, 699
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	6 cut(s)	295, 313, 364, 549, 808, 936
Bst2UI	CCWGG	1 cut(s)	941
Bst4CI	ACNGT	3 cut(s)	15, 289, 422
Bst6I	CTCTTC	3 cut(s)	23, 265, 674
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	714
BstC8I	GCNNGC	6 cut(s)	149, 203, 748, 897, 1098, 1102
BstDEI	CTNAG	4 cut(s)	77, 230, 724, 906
BstF5I	GGATG	3 cut(s)	109, 624, 691
BstFNI	CGCG	2 cut(s)	195, 802
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	4 cut(s)	7, 24, 775, 804
BstKTI	GATC	6 cut(s)	298, 316, 367, 552, 811, 939
BstMBI	GATC	6 cut(s)	295, 313, 364, 549, 808, 936
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 770, 1093
BstNI	CCWGG	1 cut(s)	941
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	939, 967
BstSLI	GKGCMC	2 cut(s)	406, 628
BstUI	CGCG	2 cut(s)	195, 802
BstV1I	GCAGC	2 cut(s)	133, 331
BstX2I	RGATCY	2 cut(s)	549, 808
BstYI	RGATCY	2 cut(s)	549, 808
Bsu15I	ATCGAT	1 cut(s)	363
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	578, 1100
BsuTUI	ATCGAT	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	109, 624, 691
BtsIMutI	CAGTG	3 cut(s)	298, 706, 1010
BtuMI	TCGCGA	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	867
Cac8I	GCNNGC	6 cut(s)	149, 203, 748, 897, 1098, 1102
CfoI	GCGC	4 cut(s)	7, 24, 775, 804
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	708, 1099
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	3 cut(s)	55, 73, 563
CviAII	CATG	3 cut(s)	496, 589, 751
CviQI	GTAC	3 cut(s)	55, 73, 563
DdeI	CTNAG	4 cut(s)	77, 230, 724, 906
DpnI	GATC	6 cut(s)	297, 315, 366, 551, 810, 938
DpnII	GATC	6 cut(s)	295, 313, 364, 549, 808, 936
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	23, 265, 674
EarI	CTCTTC	3 cut(s)	23, 265, 674
Ecl136II	GAGCTC	1 cut(s)	1087
Eco147I	AGGCCT	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	1089
Eco47I	GGWCC	1 cut(s)	708
Eco53kI	GAGCTC	1 cut(s)	1087
Eco57I	CTGAAG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	1087
EcoRII	CCWGG	1 cut(s)	939
EcoT38I	GRGCYC	1 cut(s)	1089
FaeI	CATG	3 cut(s)	499, 592, 754
FatI	CATG	3 cut(s)	495, 588, 750
FauI	CCCGC	1 cut(s)	1109
FauNDI	CATATG	1 cut(s)	1015
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	5 cut(s)	8, 97, 122, 145, 345
FokI	GGATG	3 cut(s)	116, 631, 698
FriOI	GRGCYC	1 cut(s)	1089
Fsp4HI	GCNGC	5 cut(s)	8, 97, 122, 145, 345
FspBI	CTAG	1 cut(s)	1070
GlaI	GCGC	4 cut(s)	6, 23, 774, 803
GluI	GCNGC	5 cut(s)	8, 97, 122, 145, 345
GsaI	CCCAGC	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	578, 1100
HapII	CCGG	4 cut(s)	542, 747, 968, 1105
HhaI	GCGC	4 cut(s)	7, 24, 775, 804
Hin1II	CATG	3 cut(s)	499, 592, 754
Hin6I	GCGC	4 cut(s)	5, 22, 773, 802
HinP1I	GCGC	4 cut(s)	5, 22, 773, 802
HincII	GTYRAC	1 cut(s)	952
HindII	GTYRAC	1 cut(s)	952
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	2 cut(s)	374, 596
HpaII	CCGG	4 cut(s)	542, 747, 968, 1105
Hpy166II	GTNNAC	2 cut(s)	157, 952
Hpy188I	TCNGA	3 cut(s)	103, 256, 930
Hpy188III	TCNNGA	6 cut(s)	139, 184, 194, 223, 311, 371
Hpy8I	GTNNAC	2 cut(s)	157, 952
HpyAV	CCTTC	6 cut(s)	463, 491, 568, 754, 1069, 1075
HpyCH4III	ACNGT	3 cut(s)	15, 289, 422
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	4 cut(s)	10, 914, 974, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 770, 1093
HpyF3I	CTNAG	4 cut(s)	77, 230, 724, 906
HpySE526I	ACGT	1 cut(s)	713
Hsp92II	CATG	3 cut(s)	499, 592, 754
HspAI	GCGC	4 cut(s)	5, 22, 773, 802
KroI	GCCGGC	1 cut(s)	746
KroNI	GCCGGC	1 cut(s)	748
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	6 cut(s)	295, 313, 364, 549, 808, 936
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	4 cut(s)	1046, 1084, 1093, 1112
Lsp1109I	GCAGC	2 cut(s)	133, 331
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	1070
MaeII	ACGT	1 cut(s)	713
MaeIII	GTNAC	2 cut(s)	34, 416
MalI	GATC	6 cut(s)	297, 315, 366, 551, 810, 938
MboI	GATC	6 cut(s)	295, 313, 364, 549, 808, 936
MboII	GAAGA	5 cut(s)	40, 282, 359, 691, 802
MfeI	CAATTG	1 cut(s)	412
MflI	RGATCY	2 cut(s)	549, 808
MhlI	GDGCHC	4 cut(s)	406, 628, 1010, 1089
MluCI	AATT	7 cut(s)	352, 412, 428, 732, 782, 796, 824
MroNI	GCCGGC	1 cut(s)	746
MroXI	GAANNNNTTC	1 cut(s)	983
MseI	TTAA	4 cut(s)	477, 488, 639, 777
MspI	CCGG	4 cut(s)	542, 747, 968, 1105
MspR9I	CCNGG	2 cut(s)	941, 969
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	941
MvnI	CGCG	2 cut(s)	195, 802
MwoI	GCNNNNNNNGC	3 cut(s)	30, 770, 1093
NaeI	GCCGGC	1 cut(s)	748
NciI	CCSGG	1 cut(s)	969
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	6 cut(s)	295, 313, 364, 549, 808, 936
NgoMIV	GCCGGC	1 cut(s)	746
NlaIII	CATG	3 cut(s)	499, 592, 754
NlaIV	GGNNCC	3 cut(s)	403, 857, 1114
NmeAIII	GCCGAG	1 cut(s)	830
NmuCI	GTSAC	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 880
PdiI	GCCGGC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	2 cut(s)	374, 596
PflMI	CCANNNNNTGG	2 cut(s)	705, 946
PkrI	GCNGC	5 cut(s)	9, 98, 123, 146, 346
Ppu21I	YACGTR	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	1089
Psp6I	CCWGG	1 cut(s)	939
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	939
PspN4I	GGNNCC	3 cut(s)	403, 857, 1114
PspPI	GGNCC	2 cut(s)	708, 1099
PsuI	RGATCY	2 cut(s)	549, 808
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	3 cut(s)	56, 74, 564
RsaNI	GTAC	3 cut(s)	55, 73, 563
SacI	GAGCTC	1 cut(s)	1089
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	477, 488, 639, 777
SatI	GCNGC	5 cut(s)	8, 97, 122, 145, 345
Sau3AI	GATC	6 cut(s)	295, 313, 364, 549, 808, 936
Sau96I	GGNCC	2 cut(s)	708, 1099
ScaI	AGTACT	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	941, 969
SduI	GDGCHC	4 cut(s)	406, 628, 1010, 1089
SfaNI	GCATC	1 cut(s)	216
SinI	GGWCC	1 cut(s)	708
SmlI	CTYRAG	5 cut(s)	137, 182, 221, 889, 1088
SmoI	CTYRAG	5 cut(s)	137, 182, 221, 889, 1088
Sse9I	AATT	7 cut(s)	352, 412, 428, 732, 782, 796, 824
SseBI	AGGCCT	1 cut(s)	578
SsiI	CCGC	5 cut(s)	43, 96, 145, 347, 1102
SspMI	CTAG	1 cut(s)	1070
SstI	GAGCTC	1 cut(s)	1089
StuI	AGGCCT	1 cut(s)	578
StyD4I	CCNGG	2 cut(s)	939, 967
TaaI	ACNGT	3 cut(s)	15, 289, 422
TaiI	ACGT	1 cut(s)	716
TaqI	TCGA	4 cut(s)	47, 115, 363, 691
TasI	AATT	7 cut(s)	352, 412, 428, 732, 782, 796, 824
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	2 cut(s)	99, 147
TfiI	GAWTC	2 cut(s)	374, 596
Tru1I	TTAA	4 cut(s)	477, 488, 639, 777
Tru9I	TTAA	4 cut(s)	477, 488, 639, 777
TscAI	CASTG	3 cut(s)	298, 706, 1010
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	7, 121, 344
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	6 cut(s)	144, 293, 482, 587, 594, 692
TspRI	CASTG	3 cut(s)	298, 706, 1010
Van91I	CCANNNNNTGG	2 cut(s)	705, 946
VpaK11BI	GGWCC	1 cut(s)	708
XapI	RAATTY	1 cut(s)	796
XceI	RCATGY	1 cut(s)	754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	1 cut(s)	1070
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.