Prupe.1G248500_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
26103461 .. 26105995
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G248500.1

Sequence Viewer

Length: 1470 bp
ATGGCGCTGCAACAGTTTGGGCGCACTAAGAGCGTGACGAAGCGGTCGACTAAGTATGTGGAGCAAGCTCTGTACTTGAGGCTGTTCAAGGATGGTGGCTCCGAGGTGAGCGTTCGTCAGCAGCTCAACGAAGTCCTCAAGAGTCGCAAGCGAGTTTACAAATGGGAGGTCGGCGACACCCTCAAGAAGCTTCGCGAACGCAAGCTCTACTACCCCGCTCTCAAGCTCTCGGAGGCTATGGATAGAAGAGGAATGAACAAGACAGTCAGTGATCAGGCAATACATCTTGATCTTATAGCTAAAACCCGAGATATTCCTGCTGCAGAAAATTATTTCATTGATCTTCCTGAAGCAGCAAAGACCCATCACTCATATGGTGCCCTGCTCAATTGTTACTGTAAGGAAATGATGGCTGAAAAAGCTGAAGCACTCATGGAAAAGATGAAGGCACTTAACCTTTCTTTAACCTCCATGCCTTATAACAGCCTTATGACCCTTTACTCAAAAACTGGGCATCCAGAAAAGATCCCAGCCATCATTCAAGAAATGAAGGCTGGCAGTGTCATGCTTGATTCCTGTTCTTACAATGTCTGGATGCGTGCTCTTGCTGCTGTCAATGATATTTCTGGGGTTGAAAGGGTTATTGATGAGATGAAGAGGGATGGTCGAGTTTCCAGTGATTGGACCACGTATAGCAACTTAGCTTCGATTTATGTTGAGGCTGGCATGTTTGAGAAGGCAGAAAAGACACTTAATGAATTGGAGAAAAAAAATGCACGCCGAGATCTTTTGGTTTACCAATTCCTTATTACATTGTACGGTAAAACAGGGAATCTGCGTGAAGTTCATCGGGTATGGCGTTCCTTGAGGCTGGCTTTCCCTAAAACTGCAAATATAAGTTATCTGAATATGATCCAGGTTTTGGTTAACTTGAATGATCTACCAGGTGCAGAGAAATGTTTCAGGGAATGGGAATCGCGGTGCTCAACCTATGATATTCGAGTAGCAAATGTTTTGATTGGAGCTTATGCTAAAGAGGGTATGCTAGAGAAGGCTAAGGAGCTCAAGGAGCAGGCCCGTAGGAGAGGAGCCAAGCCTAATGCAAAAACTTGGGAGATCTTTCTGGATTATTATTTGGAGACGGGAGAATATCAGTTGGCTGTTGATTGTGTTGCCAATGCGACATCCATTGGTAGAGGGGATGGTGGGAAGTGGAGTCCATCACGTAAGATTGTCAAAACCTTGATGGAGCATTTTGAGCAAGAGAAGGATGTTGATGGGGCAGAAGGTTTCCTGGAGATTTTGAAGAAGTCTGTAGATTCCCTAGGGGTTGAGGTGTTTGAGTCATTGATTAGAACTTATGCTGCTGCTGGAAGAACAACCCCTTCAATGCGCGCTCGGTTGAAAATGGAGAAATTGGAGGTGGGCGAAGCCAGTAAAAAGTTGCTTGAGGCCGTATGTGTGGAATGA

Protein Analysis

490

Amino Acids

55.67

Weight (kDa)

9.13

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013258)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AasI GACNNNNNNGTC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 377
AccB7I CCANNNNNTGG 2 cut(s) 681, 922
AccBSI CCGCTC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 47
AccII CGCG 3 cut(s) 195, 979, 1395
AciI CCGC 3 cut(s) 43, 216, 979
AclWI GGATC 2 cut(s) 520, 907
AcuI CTGAAG 2 cut(s) 369, 444
AfaI GTAC 2 cut(s) 74, 818
AfiI CCNNNNNNNGG 2 cut(s) 681, 922
AgsI TTSAA 7 cut(s) 88, 542, 635, 934, 1306, 1389, 1405
AjnI CCWGG 3 cut(s) 915, 943, 1293
Alw21I GWGCWC 3 cut(s) 604, 986, 1065
Alw26I GTCTC 1 cut(s) 1133
AlwI GGATC 2 cut(s) 520, 907
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 2 cut(s) 1074, 1452
ApeKI GCWGC 7 cut(s) 7, 121, 320, 353, 608, 1364, 1367
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
Asp700I GAANNNNTTC 1 cut(s) 959
AspA2I CCTAGG 1 cut(s) 1324
AspLEI GCGC 4 cut(s) 7, 24, 1395, 1397
AspS9I GGNCC 2 cut(s) 684, 1075
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 684
AvrII CCTAGG 1 cut(s) 1324
BaeGI GKGCMC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 1065
Bbv12I GWGCWC 3 cut(s) 604, 986, 1065
BbvI GCAGC 6 cut(s) 133, 307, 365, 595, 1351, 1354
BccI CCATC 9 cut(s) 86, 372, 403, 542, 656, 1196, 1228, 1240, 1271
BceAI ACGGC 1 cut(s) 1439
BciT130I CCWGG 3 cut(s) 917, 945, 1295
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 1133
BfaI CTAG 2 cut(s) 1046, 1325
BfmI CTRYAG 2 cut(s) 321, 1314
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 2 cut(s) 784, 1116
BisI GCNGC 7 cut(s) 8, 122, 321, 354, 609, 1365, 1368
BlnI CCTAGG 1 cut(s) 1324
BlsI GCNGC 7 cut(s) 9, 123, 322, 355, 610, 1366, 1369
Bme1390I CCNGG 3 cut(s) 917, 945, 1295
Bme18I GGWCC 1 cut(s) 684
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 684, 1075
BmiI GGNNCC 3 cut(s) 100, 379, 1090
BmrFI CCNGG 3 cut(s) 917, 945, 1295
BmrI ACTGGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 523, 585
BmuI ACTGGG 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 1316
Bpu10I CCTNAGC 1 cut(s) 1056
BpuEI CTTGAG 7 cut(s) 97, 122, 167, 206, 886, 1049, 1469
BsaAI YACGTR 2 cut(s) 690, 1226
BsaJI CCNNGG 2 cut(s) 102, 1324
Bsc4I CCNNNNNNNGG 2 cut(s) 681, 922
Bse1I ACTGG 3 cut(s) 514, 675, 1434
BseBI CCWGG 3 cut(s) 917, 945, 1295
BseDI CCNNGG 2 cut(s) 102, 1324
BseGI GGATG 7 cut(s) 97, 514, 600, 667, 1184, 1207, 1276
BseLI CCNNNNNNNGG 2 cut(s) 681, 922
BseNI ACTGG 3 cut(s) 514, 675, 1434
BsePI GCGCGC 1 cut(s) 1393
BseRI GAGGAG 1 cut(s) 1101
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 6 cut(s) 133, 307, 365, 595, 1351, 1354
BseYI CCCAGC 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 3 cut(s) 195, 979, 1395
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 1076, 1454
BshNI GGYRCC 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 3 cut(s) 604, 986, 1065
BsiHKCI CYCGRG 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 681, 922
BsmAI GTCTC 1 cut(s) 1133
BsmBI CGTCTC 1 cut(s) 1133
BsnI GGCC 2 cut(s) 1076, 1454
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 4 cut(s) 382, 604, 986, 1065
Bsp143I GATC 8 cut(s) 271, 289, 340, 525, 784, 912, 937, 1116
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 3 cut(s) 43, 216, 979
BspANI GGCC 2 cut(s) 1076, 1454
BspFNI CGCG 3 cut(s) 195, 979, 1395
BspLI GGNNCC 3 cut(s) 100, 379, 1090
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 2 cut(s) 520, 907
BspT107I GGYRCC 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 218
BsrI ACTGG 3 cut(s) 514, 675, 1434
BssECI CCNNGG 2 cut(s) 102, 1324
BssHII GCGCGC 1 cut(s) 1393
BssMI GATC 8 cut(s) 271, 289, 340, 525, 784, 912, 937, 1116
BssT1I CCWWGG 1 cut(s) 1324
Bst2UI CCWGG 3 cut(s) 917, 945, 1295
Bst4CI ACNGT 4 cut(s) 15, 265, 398, 821
Bst6I CTCTTC 2 cut(s) 241, 650
BstBAI YACGTR 2 cut(s) 690, 1226
BstDEI CTNAG 4 cut(s) 27, 51, 700, 1056
BstF5I GGATG 7 cut(s) 97, 514, 600, 667, 1184, 1207, 1276
BstFNI CGCG 3 cut(s) 195, 979, 1395
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 4 cut(s) 7, 24, 1395, 1397
BstKTI GATC 8 cut(s) 274, 292, 343, 528, 787, 915, 940, 1119
BstMAI GTCTC 1 cut(s) 1133
BstMBI GATC 8 cut(s) 271, 289, 340, 525, 784, 912, 937, 1116
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 5 cut(s) 30, 419, 608, 1069, 1258
BstNI CCWGG 3 cut(s) 917, 945, 1295
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 3 cut(s) 915, 943, 1293
BstSFI CTRYAG 2 cut(s) 321, 1314
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 3 cut(s) 195, 979, 1395
BstV1I GCAGC 6 cut(s) 133, 307, 365, 595, 1351, 1354
BstX2I RGATCY 3 cut(s) 525, 784, 1116
BstYI RGATCY 3 cut(s) 525, 784, 1116
BsuRI GGCC 2 cut(s) 1076, 1454
BtsCI GGATG 7 cut(s) 97, 514, 600, 667, 1184, 1207, 1276
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 274, 565, 682
BtuMI TCGCGA 1 cut(s) 195
CfoI GCGC 4 cut(s) 7, 24, 1395, 1397
Cfr13I GGNCC 2 cut(s) 684, 1075
CsiI ACCWGGT 1 cut(s) 943
Csp6I GTAC 2 cut(s) 73, 817
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 4 cut(s) 433, 472, 565, 727
CviQI GTAC 2 cut(s) 73, 817
DdeI CTNAG 4 cut(s) 27, 51, 700, 1056
DpnI GATC 8 cut(s) 273, 291, 342, 527, 786, 914, 939, 1118
DpnII GATC 8 cut(s) 271, 289, 340, 525, 784, 912, 937, 1116
DrdI GACNNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 241, 650
EarI CTCTTC 2 cut(s) 241, 650
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 1 cut(s) 1324
Eco24I GRGCYC 1 cut(s) 1065
Eco47I GGWCC 1 cut(s) 684
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 2 cut(s) 369, 444
Eco88I CYCGRG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 1063
EcoRII CCWGG 3 cut(s) 915, 943, 1293
EcoT14I CCWWGG 1 cut(s) 1324
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 1324
Esp3I CGTCTC 1 cut(s) 1133
FaeI CATG 4 cut(s) 436, 475, 568, 730
FatI CATG 4 cut(s) 432, 471, 564, 726
FauI CCCGC 1 cut(s) 223
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 7 cut(s) 8, 122, 321, 354, 609, 1365, 1368
FokI GGATG 7 cut(s) 104, 501, 607, 674, 1171, 1214, 1283
FriOI GRGCYC 1 cut(s) 1065
Fsp4HI GCNGC 7 cut(s) 8, 122, 321, 354, 609, 1365, 1368
FspBI CTAG 2 cut(s) 1046, 1325
GlaI GCGC 4 cut(s) 6, 23, 1394, 1396
GluI GCNGC 7 cut(s) 8, 122, 321, 354, 609, 1365, 1368
GsaI CCCAGC 1 cut(s) 533
GsuI CTGGAG 1 cut(s) 1316
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 1076, 1454
HhaI GCGC 4 cut(s) 7, 24, 1395, 1397
Hin1II CATG 4 cut(s) 436, 475, 568, 730
Hin6I GCGC 4 cut(s) 5, 22, 1393, 1395
HinP1I GCGC 4 cut(s) 5, 22, 1393, 1395
HincII GTYRAC 2 cut(s) 48, 928
HindII GTYRAC 2 cut(s) 48, 928
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 7 cut(s) 142, 572, 832, 974, 1216, 1319, 1343
HpaI GTTAAC 1 cut(s) 928
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 4 cut(s) 48, 157, 796, 928
Hpy188I TCNGA 3 cut(s) 103, 232, 906
Hpy188III TCNNGA 9 cut(s) 139, 184, 194, 287, 347, 518, 542, 592, 1124
Hpy8I GTNNAC 4 cut(s) 48, 157, 796, 928
HpyAV CCTTC 7 cut(s) 439, 544, 730, 1045, 1261, 1280, 1395
HpyCH4III ACNGT 4 cut(s) 15, 265, 398, 821
HpyCH4IV ACGT 2 cut(s) 689, 1225
HpyCH4V TGCA 6 cut(s) 10, 323, 776, 890, 950, 1103
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 419, 608, 1069, 1258
HpyF3I CTNAG 4 cut(s) 27, 51, 700, 1056
HpySE526I ACGT 2 cut(s) 689, 1225
Hsp92II CATG 4 cut(s) 436, 475, 568, 730
HspAI GCGC 4 cut(s) 5, 22, 1393, 1395
Ksp22I TGATCA 1 cut(s) 271
KspAI GTTAAC 1 cut(s) 928
Kzo9I GATC 8 cut(s) 271, 289, 340, 525, 784, 912, 937, 1116
LmnI GCTCC 7 cut(s) 61, 104, 1022, 1060, 1069, 1088, 1249
Lsp1109I GCAGC 6 cut(s) 133, 307, 365, 595, 1351, 1354
LweI GCATC 2 cut(s) 523, 585
MabI ACCWGGT 1 cut(s) 943
MaeI CTAG 2 cut(s) 1046, 1325
MaeII ACGT 2 cut(s) 689, 1225
MaeIII GTNAC 2 cut(s) 34, 392
MalI GATC 8 cut(s) 273, 291, 342, 527, 786, 914, 939, 1118
MbiI CCGCTC 1 cut(s) 218
MboI GATC 8 cut(s) 271, 289, 340, 525, 784, 912, 937, 1116
MboII GAAGA 5 cut(s) 258, 335, 667, 1318, 1386
MfeI CAATTG 1 cut(s) 388
MflI RGATCY 3 cut(s) 525, 784, 1116
MhlI GDGCHC 4 cut(s) 382, 604, 986, 1065
MluCI AATT 5 cut(s) 328, 388, 758, 800, 1415
MlyI GAGTC 3 cut(s) 151, 1225, 1352
MroXI GAANNNNTTC 1 cut(s) 959
MseI TTAA 4 cut(s) 453, 464, 753, 927
MslI CAYNNNNRTG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 917, 945, 1295
MunI CAATTG 1 cut(s) 388
MvaI CCWGG 3 cut(s) 917, 945, 1295
MvnI CGCG 3 cut(s) 195, 979, 1395
MwoI GCNNNNNNNGC 5 cut(s) 30, 419, 608, 1069, 1258
NdeI CATATG 1 cut(s) 373
NdeII GATC 8 cut(s) 271, 289, 340, 525, 784, 912, 937, 1116
NlaIII CATG 4 cut(s) 436, 475, 568, 730
NlaIV GGNNCC 3 cut(s) 100, 379, 1090
NmeAIII GCCGAG 1 cut(s) 806
NmuCI GTSAC 1 cut(s) 34
NruI TCGCGA 1 cut(s) 195
NspI RCATGY 1 cut(s) 730
PauI GCGCGC 1 cut(s) 1393
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 856
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 4 cut(s) 572, 832, 974, 1319
PflMI CCANNNNNTGG 2 cut(s) 681, 922
PfoI TCCNGGA 1 cut(s) 1293
PkrI GCNGC 7 cut(s) 9, 123, 322, 355, 610, 1366, 1369
PleI GAGTC 3 cut(s) 150, 1224, 1351
PpsI GAGTC 3 cut(s) 150, 1224, 1351
Ppu21I YACGTR 2 cut(s) 690, 1226
PsiI TTATAA 1 cut(s) 480
Psp124BI GAGCTC 1 cut(s) 1065
Psp6I CCWGG 3 cut(s) 915, 943, 1293
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 3 cut(s) 915, 943, 1293
PspN4I GGNNCC 3 cut(s) 100, 379, 1090
PspPI GGNCC 2 cut(s) 684, 1075
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 3 cut(s) 525, 784, 1116
PteI GCGCGC 1 cut(s) 1393
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 2 cut(s) 74, 818
RsaNI GTAC 2 cut(s) 73, 817
RseI CAYNNNNRTG 1 cut(s) 372
SacI GAGCTC 1 cut(s) 1065
SalI GTCGAC 1 cut(s) 46
SaqAI TTAA 4 cut(s) 453, 464, 753, 927
SatI GCNGC 7 cut(s) 8, 122, 321, 354, 609, 1365, 1368
Sau3AI GATC 8 cut(s) 271, 289, 340, 525, 784, 912, 937, 1116
Sau96I GGNCC 2 cut(s) 684, 1075
SchI GAGTC 3 cut(s) 151, 1225, 1352
ScrFI CCNGG 3 cut(s) 917, 945, 1295
SduI GDGCHC 4 cut(s) 382, 604, 986, 1065
SexAI ACCWGGT 1 cut(s) 943
SfaNI GCATC 2 cut(s) 523, 585
SfcI CTRYAG 2 cut(s) 321, 1314
SinI GGWCC 1 cut(s) 684
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 7 cut(s) 76, 137, 182, 221, 865, 1064, 1448
SmoI CTYRAG 7 cut(s) 76, 137, 182, 221, 865, 1064, 1448
Sse9I AATT 5 cut(s) 328, 388, 758, 800, 1415
SsiI CCGC 3 cut(s) 43, 216, 979
SspMI CTAG 2 cut(s) 1046, 1325
SstI GAGCTC 1 cut(s) 1065
StyD4I CCNGG 3 cut(s) 915, 943, 1293
StyI CCWWGG 1 cut(s) 1324
TaaI ACNGT 4 cut(s) 15, 265, 398, 821
TaiI ACGT 2 cut(s) 692, 1228
TaqI TCGA 4 cut(s) 47, 667, 707, 1000
TasI AATT 5 cut(s) 328, 388, 758, 800, 1415
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 4 cut(s) 572, 832, 974, 1319
Tru1I TTAA 4 cut(s) 453, 464, 753, 927
Tru9I TTAA 4 cut(s) 453, 464, 753, 927
TscAI CASTG 3 cut(s) 274, 565, 682
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 7 cut(s) 7, 121, 320, 353, 608, 1364, 1367
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 7 cut(s) 269, 325, 458, 563, 668, 771, 836
TspRI CASTG 3 cut(s) 274, 565, 682
Van91I CCANNNNNTGG 2 cut(s) 681, 922
VpaK11BI GGWCC 1 cut(s) 684
XceI RCATGY 1 cut(s) 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XmaJI CCTAGG 1 cut(s) 1324
XmiI GTMKAC 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 959
XspI CTAG 2 cut(s) 1046, 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.