FvH4_4g12790

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015596
Physical Location & Seq
Forward (+)
16459161 .. 16461029
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12790.t3

Sequence Viewer

Length: 414 bp
ATGAGTCGCCGGAATGATGACGTGGCAGGTAGTCCAGTGATCAATGACATTACCGATGCTTTCTTGTGGAGCGCAACTATCGGTGCTACCAAAGCTGCTGCGGAGGGTACTTACTATGCCATCCAAAGAGGGAGCGTTTCAAGTCACGACTTTGAGTGCACTTTAAAGAGAATGGGTGAAGAAGGTGTATACTGGGGAACTACAGCTGGACTTTTTGTGACGACAGAGTATGGGCTAGAGAGCGTGCGTGGCAGAAGTGACTGGAAGAATACCTTGATTGCGGGTGCAGTGACAGGGGCTGTGATGTCTGCTGTGAATAAGAACAACAAGGACAAAATTCTGACGGATGCAATTGTTGGAGGTGCCGTTGCAACTGCTGCGTCTTTCGTTAGAAACTTTAGAACTGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

138

Amino Acids

14.55

Weight (kDa)

7.84

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 189
AciI CCGC 2 cut(s) 101, 281
AcsI RAATTY 1 cut(s) 336
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 141
AjiI CACGTC 1 cut(s) 22
AluBI AGCT 2 cut(s) 95, 206
AluI AGCT 2 cut(s) 95, 206
Alw21I GWGCWC 1 cut(s) 161
Alw44I GTGCAC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 157
ApeKI GCWGC 3 cut(s) 95, 98, 377
ApoI RAATTY 1 cut(s) 336
AspLEI GCGC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 82, 85, 364
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 350
BclI TGATCA 1 cut(s) 39
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 3 cut(s) 96, 99, 378
BlsI GCNGC 3 cut(s) 97, 100, 379
BmgBI CACGTC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 364
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 2 cut(s) 46, 337
BmuI ACTGGG 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bse1I ACTGG 4 cut(s) 35, 197, 266, 409
BseGI GGATG 2 cut(s) 120, 352
BseNI ACTGG 4 cut(s) 35, 197, 266, 409
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 3 cut(s) 82, 85, 364
BsgI GTGCAG 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 2 cut(s) 101, 281
BspLI GGNNCC 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 362
BsrI ACTGG 4 cut(s) 35, 197, 266, 409
BssMI GATC 1 cut(s) 39
BssNAI GTATAC 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 245
BstF5I GGATG 2 cut(s) 120, 352
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 92, 249, 377
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 3 cut(s) 82, 85, 364
BstZ17I GTATAC 1 cut(s) 190
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 2 cut(s) 120, 352
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 2 cut(s) 42, 294
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 245
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 74
CseI GACGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 4 cut(s) 95, 206, 235, 299
CviKI_1 RGCY 4 cut(s) 95, 206, 235, 299
CviQI GTAC 1 cut(s) 108
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DraI TTTAAA 1 cut(s) 165
FaiI YATR 3 cut(s) 117, 190, 231
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FauI CCCGC 1 cut(s) 274
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 96, 99, 378
FokI GGATG 2 cut(s) 107, 359
Fsp4HI GCNGC 3 cut(s) 96, 99, 378
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 73
GluI GCNGC 3 cut(s) 96, 99, 378
HapII CCGG 1 cut(s) 10
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 74
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 10
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 159, 190
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 2 cut(s) 159, 190
HpyAV CCTTC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 4 cut(s) 159, 287, 350, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 249, 377
HpySE526I ACGT 1 cut(s) 21
HspAI GCGC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 69, 132
LpnPI CCDG 8 cut(s) 12, 23, 48, 178, 192, 247, 279, 390
Lsp1109I GCAGC 3 cut(s) 82, 85, 364
LweI GCATC 2 cut(s) 46, 337
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 4 cut(s) 143, 217, 257, 289
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 2 cut(s) 191, 277
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 336, 351
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 3 cut(s) 97, 122, 353
MseI TTAA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 10
MunI CAATTG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 92, 249, 377
NdeII GATC 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 4 cut(s) 143, 217, 257, 289
PkrI GCNGC 3 cut(s) 97, 100, 379
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 3 cut(s) 96, 99, 378
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 161
SetI ASST 7 cut(s) 24, 31, 97, 187, 208, 275, 364
SfaNI GCATC 2 cut(s) 46, 337
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 336, 351
SsiI CCGC 2 cut(s) 101, 281
SspMI CTAG 1 cut(s) 236
TaiI ACGT 1 cut(s) 24
TasI AATT 2 cut(s) 336, 351
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 2 cut(s) 42, 294
TseFI GTSAC 4 cut(s) 143, 217, 257, 289
TseI GCWGC 3 cut(s) 95, 98, 377
Tsp45I GTSAC 4 cut(s) 143, 217, 257, 289
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 42, 294
VneI GTGCAC 1 cut(s) 157
XapI RAATTY 1 cut(s) 336
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.