RLG00000008317

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015596
Physical Location & Seq
Reverse (-)
28829276 .. 28830746
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008317

Sequence Viewer

Length: 426 bp
ATGACTTGCCCCAAGAATGACCGGGCAATAGGCCTGGGTAGTCCATTGCTCAATGACATCGCCGATGCTTTCTTGAAGAGCATCGGTGTTACCAAAGCTGCTGCAGAGGATACTTACTATGCCGTCAAAAGGGGGAGCGTTTCAAGTCAGGACTTTGAGTACACTTTGAAGAATATGTGTAAAGAAGGTGCATATTATGGAACTGTTGCTGGAGTTTTTGTGACGACGGAGTATGGTCTAGAGAGTGTTCGTGGAAGAAGAGACTGGAAGAATACCTTGATTGCGGGTGCAATAACAGGGGCTGTGATGTCTGCAGTGAACAAAAACAACAAGGACAAAATTCTGGTGGATGCAATGGTTGCAGGTACCATTGCAGGTGCTGCATTATTCCTCAGAAATGTTGCCACAGGATCTCTCCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

142

Amino Acids

14.99

Weight (kDa)

9.27

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 29 - 129 9.5e-13 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
Acc36I ACCTGC 2 cut(s) 353, 365
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AciI CCGC 2 cut(s) 284, 418
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 1 cut(s) 339
AfaI GTAC 2 cut(s) 161, 367
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 3 cut(s) 76, 144, 169
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 418
AlwNI CAGNNNCTG 2 cut(s) 302, 380
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 3 cut(s) 98, 101, 380
ApoI RAATTY 1 cut(s) 339
Asp718I GGTACC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 23
BanI GGYRCC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 85, 88, 367
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 103
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 2 cut(s) 102, 312
BfuAI ACCTGC 2 cut(s) 353, 365
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 3 cut(s) 99, 102, 381
BlsI GCNGC 3 cut(s) 100, 103, 382
Bme1390I CCNGG 2 cut(s) 23, 35
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 2 cut(s) 23, 35
BmsI GCATC 3 cut(s) 55, 90, 340
BpmI CTGGAG 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 3 cut(s) 44, 360, 369
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 3 cut(s) 44, 360, 369
BseMII CTCAG 1 cut(s) 406
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 3 cut(s) 85, 88, 367
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 410
BspACI CCGC 2 cut(s) 284, 418
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 367
BspMAI CTGCAG 2 cut(s) 106, 316
BspMI ACCTGC 2 cut(s) 353, 365
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 365
BsrDI GCAATG 3 cut(s) 44, 360, 369
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 2 cut(s) 71, 253
BstAPI GCANNNNNTGC 2 cut(s) 359, 380
BstDEI CTNAG 1 cut(s) 392
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 1 cut(s) 413
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 410
BstMWI GCNNNNNNNGC 2 cut(s) 359, 380
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 21, 33
BstSFI CTRYAG 2 cut(s) 102, 312
BstV1I GCAGC 3 cut(s) 85, 88, 367
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 2 cut(s) 353, 365
CaiI CAGNNNCTG 2 cut(s) 302, 380
Csp6I GTAC 2 cut(s) 160, 366
CviJI RGCY 3 cut(s) 33, 98, 302
CviKI_1 RGCY 3 cut(s) 33, 98, 302
CviQI GTAC 2 cut(s) 160, 366
DdeI CTNAG 1 cut(s) 392
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eam1104I CTCTTC 2 cut(s) 71, 253
EarI CTCTTC 2 cut(s) 71, 253
Eco147I AGGCCT 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 33
FaiI YATR 5 cut(s) 120, 176, 193, 198, 234
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 99, 102, 381
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 99, 102, 381
FspBI CTAG 1 cut(s) 239
GluI GCNGC 3 cut(s) 99, 102, 381
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 22
HpaII CCGG 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 162, 319
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 3 cut(s) 73, 149, 239
Hpy8I GTNNAC 2 cut(s) 162, 319
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 8 cut(s) 104, 191, 290, 314, 353, 362, 374, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 380
HpyF3I CTNAG 1 cut(s) 392
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 1 cut(s) 410
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 135
Lsp1109I GCAGC 3 cut(s) 85, 88, 367
LweI GCATC 3 cut(s) 55, 90, 340
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 88, 220
MalI GATC 1 cut(s) 412
MboI GATC 1 cut(s) 410
MboII GAAGA 5 cut(s) 88, 181, 267, 270, 280
MflI RGATCY 1 cut(s) 410
MluCI AATT 1 cut(s) 339
MnlI CCTC 2 cut(s) 100, 401
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 2 cut(s) 23, 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 359, 380
NciI CCSGG 1 cut(s) 23
NdeII GATC 1 cut(s) 410
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 365
PceI AGGCCT 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 100, 103, 382
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 367
PstI CTGCAG 2 cut(s) 106, 316
PstNI CAGNNNCTG 2 cut(s) 302, 380
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 2 cut(s) 161, 367
RsaNI GTAC 2 cut(s) 160, 366
SapI GCTCTTC 1 cut(s) 71
SatI GCNGC 3 cut(s) 99, 102, 381
Sau3AI GATC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 23, 35
SetI ASST 5 cut(s) 100, 190, 278, 367, 379
SfaNI GCATC 3 cut(s) 55, 90, 340
SfcI CTRYAG 2 cut(s) 102, 312
Sse9I AATT 1 cut(s) 339
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 2 cut(s) 284, 418
SspMI CTAG 1 cut(s) 239
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 21, 33
TaaI ACNGT 1 cut(s) 205
TasI AATT 1 cut(s) 339
TatI WGTACW 1 cut(s) 159
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 98, 101, 380
Tsp45I GTSAC 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 321
XapI RAATTY 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 238
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.